data_EQB # _chem_comp.id EQB _chem_comp.name ;(2~{S},3~{S})-3-methyl-2-[(1~{R})-2-[[(2~{S})-3-methyl-1-[[(2~{S})-3-methyl-1-oxidanylidene-1-phenylmethoxy-butan-2-yl] amino]-1-oxidanylidene-butan-2-yl]amino]-1-oxidanyl-2-oxidanylidene-ethyl]pentanoic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H38 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cystargolide B Derivative" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-04-09 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EQB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6G8N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EQB C4 C1 C 0 1 N N S 63.208 -136.488 41.904 -5.214 0.382 -0.464 C4 EQB 1 EQB C5 C2 C 0 1 N N S 64.074 -135.279 41.890 -6.523 1.091 -0.821 C5 EQB 2 EQB C6 C3 C 0 1 N N N 64.104 -134.696 40.506 -6.269 2.594 -0.953 C6 EQB 3 EQB C7 C4 C 0 1 N N N 63.305 -134.369 42.807 -7.053 0.544 -2.149 C7 EQB 4 EQB C8 C5 C 0 1 N N N 63.995 -133.035 42.959 -8.421 1.161 -2.444 C8 EQB 5 EQB C15 C6 C 0 1 N N N 61.969 -141.749 41.996 -1.352 -1.999 0.198 C15 EQB 6 EQB C17 C7 C 0 1 N N N 62.440 -141.856 40.565 -0.149 -2.864 0.580 C17 EQB 7 EQB C21 C8 C 0 1 N N S 59.022 -140.176 45.054 2.466 0.397 0.156 C21 EQB 8 EQB C22 C9 C 0 1 N N N 57.995 -139.112 45.153 2.686 1.642 1.019 C22 EQB 9 EQB C24 C10 C 0 1 N N N 56.970 -139.451 44.103 1.465 2.557 0.915 C24 EQB 10 EQB C28 C11 C 0 1 N N N 57.579 -143.099 46.766 5.991 -0.980 0.005 C28 EQB 11 EQB C1 C12 C 0 1 N N N 63.188 -136.971 43.309 -5.464 -1.098 -0.334 C1 EQB 12 EQB O3 O1 O 0 1 N N N 62.373 -136.548 44.110 -6.525 -1.497 0.085 O3 EQB 13 EQB C9 C13 C 0 1 N N R 63.624 -137.599 40.985 -4.684 0.929 0.863 C9 EQB 14 EQB O10 O2 O 0 1 N N N 64.731 -138.218 41.571 -5.677 0.762 1.877 O10 EQB 15 EQB C11 C14 C 0 1 N N N 62.509 -138.602 41.013 -3.437 0.178 1.253 C11 EQB 16 EQB O12 O3 O 0 1 N N N 61.713 -138.624 40.094 -3.411 -0.462 2.283 O12 EQB 17 EQB N13 N1 N 0 1 N N N 62.424 -139.389 42.072 -2.350 0.218 0.457 N13 EQB 18 EQB C14 C15 C 0 1 N N S 61.382 -140.402 42.213 -1.175 -0.595 0.780 C14 EQB 19 EQB C16 C16 C 0 1 N N N 60.880 -142.738 42.276 -1.452 -1.910 -1.326 C16 EQB 20 EQB C18 C17 C 0 1 N N N 60.842 -140.450 43.590 0.056 0.043 0.190 C18 EQB 21 EQB O19 O4 O 0 1 N N N 61.516 -140.859 44.509 -0.054 0.882 -0.679 O19 EQB 22 EQB N20 N2 N 0 1 N N N 59.584 -140.141 43.725 1.278 -0.319 0.627 N20 EQB 23 EQB C23 C18 C 0 1 N N N 57.385 -139.236 46.525 2.888 1.223 2.476 C23 EQB 24 EQB C25 C19 C 0 1 N N N 58.297 -141.457 45.245 3.669 -0.504 0.258 C25 EQB 25 EQB O26 O5 O 0 1 N N N 57.820 -142.031 44.290 3.547 -1.629 0.681 O26 EQB 26 EQB O27 O6 O 0 1 N N N 58.202 -141.849 46.525 4.877 -0.057 -0.121 O27 EQB 27 EQB C29 C20 C 0 1 Y N N 57.386 -143.252 48.136 7.255 -0.308 -0.464 C29 EQB 28 EQB C30 C21 C 0 1 Y N N 57.285 -144.502 48.690 8.038 0.396 0.433 C30 EQB 29 EQB C31 C22 C 0 1 Y N N 57.085 -144.664 50.050 9.198 1.013 0.002 C31 EQB 30 EQB C32 C23 C 0 1 Y N N 56.978 -143.575 50.880 9.576 0.925 -1.325 C32 EQB 31 EQB C33 C24 C 0 1 Y N N 57.074 -142.315 50.331 8.794 0.221 -2.221 C33 EQB 32 EQB C34 C25 C 0 1 Y N N 57.275 -142.162 48.972 7.636 -0.400 -1.790 C34 EQB 33 EQB H1 H1 H 0 1 N N N 62.187 -136.183 41.630 -4.479 0.559 -1.249 H1 EQB 34 EQB H2 H2 H 0 1 N N N 65.085 -135.487 42.271 -7.258 0.914 -0.036 H2 EQB 35 EQB H3 H3 H 0 1 N N N 64.745 -133.802 40.498 -7.201 3.099 -1.208 H3 EQB 36 EQB H4 H4 H 0 1 N N N 64.505 -135.441 39.803 -5.891 2.983 -0.008 H4 EQB 37 EQB H5 H5 H 0 1 N N N 63.084 -134.418 40.203 -5.534 2.771 -1.739 H5 EQB 38 EQB H6 H6 H 0 1 N N N 62.300 -134.207 42.391 -6.359 0.799 -2.950 H6 EQB 39 EQB H7 H7 H 0 1 N N N 63.221 -134.844 43.796 -7.149 -0.539 -2.083 H7 EQB 40 EQB H8 H8 H 0 1 N N N 63.409 -132.394 43.634 -9.115 0.907 -1.643 H8 EQB 41 EQB H9 H9 H 0 1 N N N 65.000 -133.188 43.379 -8.325 2.245 -2.510 H9 EQB 42 EQB H10 H10 H 0 1 N N N 64.079 -132.551 41.975 -8.799 0.772 -3.389 H10 EQB 43 EQB H11 H11 H 0 1 N N N 62.813 -141.912 42.682 -2.262 -2.447 0.597 H11 EQB 44 EQB H12 H12 H 0 1 N N N 62.876 -142.851 40.396 -0.081 -2.933 1.665 H12 EQB 45 EQB H13 H13 H 0 1 N N N 61.587 -141.710 39.886 -0.271 -3.863 0.159 H13 EQB 46 EQB H14 H14 H 0 1 N N N 63.200 -141.085 40.371 0.762 -2.414 0.186 H14 EQB 47 EQB H15 H15 H 0 1 N N N 59.797 -140.046 45.823 2.322 0.696 -0.882 H15 EQB 48 EQB H16 H16 H 0 1 N N N 58.423 -138.112 44.991 3.570 2.175 0.668 H16 EQB 49 EQB H17 H17 H 0 1 N N N 56.168 -138.698 44.116 1.321 2.855 -0.123 H17 EQB 50 EQB H18 H18 H 0 1 N N N 57.449 -139.459 43.113 0.581 2.024 1.266 H18 EQB 51 EQB H19 H19 H 0 1 N N N 56.545 -140.443 44.313 1.622 3.443 1.530 H19 EQB 52 EQB H20 H20 H 0 1 N N N 56.608 -143.133 46.251 6.102 -1.275 1.048 H20 EQB 53 EQB H21 H21 H 0 1 N N N 58.221 -143.910 46.391 5.801 -1.863 -0.605 H21 EQB 54 EQB H23 H23 H 0 1 N N N 63.817 -137.233 39.966 -4.452 1.988 0.753 H23 EQB 55 EQB H24 H24 H 0 1 N N N 65.466 -137.616 41.575 -5.933 -0.158 2.029 H24 EQB 56 EQB H25 H25 H 0 1 N N N 63.098 -139.287 42.803 -2.345 0.786 -0.330 H25 EQB 57 EQB H26 H26 H 0 1 N N N 60.570 -140.222 41.493 -1.066 -0.662 1.863 H26 EQB 58 EQB H27 H27 H 0 1 N N N 60.555 -142.640 43.322 -0.562 -1.420 -1.721 H27 EQB 59 EQB H28 H28 H 0 1 N N N 60.028 -142.544 41.608 -1.531 -2.914 -1.745 H28 EQB 60 EQB H29 H29 H 0 1 N N N 61.257 -143.757 42.103 -2.336 -1.333 -1.599 H29 EQB 61 EQB H30 H30 H 0 1 N N N 59.026 -139.888 42.934 1.371 -1.054 1.254 H30 EQB 62 EQB H31 H31 H 0 1 N N N 58.139 -138.987 47.286 3.758 0.571 2.550 H31 EQB 63 EQB H32 H32 H 0 1 N N N 56.534 -138.544 46.612 3.045 2.109 3.091 H32 EQB 64 EQB H33 H33 H 0 1 N N N 57.036 -140.268 46.679 2.004 0.690 2.827 H33 EQB 65 EQB H34 H34 H 0 1 N N N 57.363 -145.373 48.056 7.742 0.465 1.469 H34 EQB 66 EQB H35 H35 H 0 1 N N N 57.012 -145.659 50.464 9.808 1.563 0.702 H35 EQB 67 EQB H36 H36 H 0 1 N N N 56.822 -143.704 51.941 10.482 1.407 -1.661 H36 EQB 68 EQB H37 H37 H 0 1 N N N 56.992 -141.444 50.964 9.089 0.153 -3.258 H37 EQB 69 EQB H38 H38 H 0 1 N N N 57.347 -141.168 48.557 7.027 -0.953 -2.489 H38 EQB 70 EQB OXT O7 O 0 1 N Y N 64.165 -137.851 43.555 -4.508 -1.973 -0.684 O1 EQB 71 EQB HXT H22 H 0 1 N Y N 64.136 -138.110 44.469 -4.715 -2.913 -0.583 H22 EQB 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EQB O12 C11 DOUB N N 1 EQB C6 C5 SING N N 2 EQB C17 C15 SING N N 3 EQB C9 C11 SING N N 4 EQB C9 O10 SING N N 5 EQB C9 C4 SING N N 6 EQB C11 N13 SING N N 7 EQB C5 C4 SING N N 8 EQB C5 C7 SING N N 9 EQB C4 C1 SING N N 10 EQB C15 C14 SING N N 11 EQB C15 C16 SING N N 12 EQB N13 C14 SING N N 13 EQB C14 C18 SING N N 14 EQB C7 C8 SING N N 15 EQB C1 O3 DOUB N N 16 EQB C18 N20 SING N N 17 EQB C18 O19 DOUB N N 18 EQB N20 C21 SING N N 19 EQB C24 C22 SING N N 20 EQB O26 C25 DOUB N N 21 EQB C21 C22 SING N N 22 EQB C21 C25 SING N N 23 EQB C22 C23 SING N N 24 EQB C25 O27 SING N N 25 EQB O27 C28 SING N N 26 EQB C28 C29 SING N N 27 EQB C29 C30 DOUB Y N 28 EQB C29 C34 SING Y N 29 EQB C30 C31 SING Y N 30 EQB C34 C33 DOUB Y N 31 EQB C31 C32 DOUB Y N 32 EQB C33 C32 SING Y N 33 EQB C4 H1 SING N N 34 EQB C5 H2 SING N N 35 EQB C6 H3 SING N N 36 EQB C6 H4 SING N N 37 EQB C6 H5 SING N N 38 EQB C7 H6 SING N N 39 EQB C7 H7 SING N N 40 EQB C8 H8 SING N N 41 EQB C8 H9 SING N N 42 EQB C8 H10 SING N N 43 EQB C15 H11 SING N N 44 EQB C17 H12 SING N N 45 EQB C17 H13 SING N N 46 EQB C17 H14 SING N N 47 EQB C21 H15 SING N N 48 EQB C22 H16 SING N N 49 EQB C24 H17 SING N N 50 EQB C24 H18 SING N N 51 EQB C24 H19 SING N N 52 EQB C28 H20 SING N N 53 EQB C28 H21 SING N N 54 EQB C9 H23 SING N N 55 EQB O10 H24 SING N N 56 EQB N13 H25 SING N N 57 EQB C14 H26 SING N N 58 EQB C16 H27 SING N N 59 EQB C16 H28 SING N N 60 EQB C16 H29 SING N N 61 EQB N20 H30 SING N N 62 EQB C23 H31 SING N N 63 EQB C23 H32 SING N N 64 EQB C23 H33 SING N N 65 EQB C30 H34 SING N N 66 EQB C31 H35 SING N N 67 EQB C32 H36 SING N N 68 EQB C33 H37 SING N N 69 EQB C34 H38 SING N N 70 EQB C1 OXT SING N N 71 EQB OXT HXT SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EQB InChI InChI 1.03 "InChI=1S/C25H38N2O7/c1-7-16(6)18(24(31)32)21(28)23(30)26-19(14(2)3)22(29)27-20(15(4)5)25(33)34-13-17-11-9-8-10-12-17/h8-12,14-16,18-21,28H,7,13H2,1-6H3,(H,26,30)(H,27,29)(H,31,32)/t16-,18-,19-,20-,21+/m0/s1" EQB InChIKey InChI 1.03 RMHIPIPWRGRHJG-RKFFNLMFSA-N EQB SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@@H]([C@@H](O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C(C)C)C(=O)OCc1ccccc1)C(O)=O" EQB SMILES CACTVS 3.385 "CC[CH](C)[CH]([CH](O)C(=O)N[CH](C(C)C)C(=O)N[CH](C(C)C)C(=O)OCc1ccccc1)C(O)=O" EQB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC[C@H](C)[C@@H]([C@H](C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](C(C)C)C(=O)OCc1ccccc1)O)C(=O)O" EQB SMILES "OpenEye OEToolkits" 2.0.6 "CCC(C)C(C(C(=O)NC(C(C)C)C(=O)NC(C(C)C)C(=O)OCc1ccccc1)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id EQB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S})-3-methyl-2-[(1~{R})-2-[[(2~{S})-3-methyl-1-[[(2~{S})-3-methyl-1-oxidanylidene-1-phenylmethoxy-butan-2-yl]amino]-1-oxidanylidene-butan-2-yl]amino]-1-oxidanyl-2-oxidanylidene-ethyl]pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EQB "Create component" 2018-04-09 EBI EQB "Initial release" 2018-09-12 RCSB EQB "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EQB _pdbx_chem_comp_synonyms.name "Cystargolide B Derivative" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##