data_ERJ # _chem_comp.id ERJ _chem_comp.name "9-beta-D-ribofuranosyl-6-(thiophen-3-yl)-9H-purine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-30 _chem_comp.pdbx_modified_date 2019-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ERJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C9R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ERJ N1 N1 N 0 1 Y N N -11.636 15.628 17.950 -2.575 2.040 -0.648 N1 ERJ 1 ERJ N3 N2 N 0 1 Y N N -11.279 14.216 16.164 -0.269 2.094 -0.799 N3 ERJ 2 ERJ C4 C1 C 0 1 Y N N -12.598 13.968 16.049 -0.170 0.822 -0.431 C4 ERJ 3 ERJ C5 C2 C 0 1 Y N N -13.487 14.573 16.905 -1.343 0.098 -0.150 C5 ERJ 4 ERJ C6 C3 C 0 1 Y N N -12.947 15.437 17.912 -2.578 0.762 -0.273 C6 ERJ 5 ERJ C8 C4 C 0 1 Y N N -14.625 13.322 15.539 0.332 -1.246 0.145 C8 ERJ 6 ERJ C20 C5 C 0 1 Y N N -13.203 16.945 19.780 -4.040 -1.245 -0.274 C20 ERJ 7 ERJ C22 C6 C 0 1 Y N N -15.798 16.581 20.027 -5.998 -0.117 0.763 C22 ERJ 8 ERJ "C1'" C7 C 0 1 N N R -12.806 12.419 14.103 2.294 0.242 -0.407 "C1'" ERJ 9 ERJ C19 C8 C 0 1 Y N N -13.754 16.072 18.851 -3.848 0.058 0.009 C19 ERJ 10 ERJ C2 C9 C 0 1 Y N N -10.818 15.023 17.111 -1.447 2.675 -0.900 C2 ERJ 11 ERJ "C2'" C10 C 0 1 N N R -13.453 11.037 13.912 2.891 0.826 0.899 "C2'" ERJ 12 ERJ C23 C11 C 0 1 Y N N -15.149 15.871 18.978 -4.951 0.687 0.591 C23 ERJ 13 ERJ "C3'" C12 C 0 1 N N S -13.667 10.935 12.377 4.391 0.469 0.757 "C3'" ERJ 14 ERJ "C4'" C13 C 0 1 N N R -13.091 12.228 11.819 4.410 -0.688 -0.260 "C4'" ERJ 15 ERJ "C5'" C14 C 0 1 N N N -13.865 12.831 10.664 5.059 -1.923 0.369 "C5'" ERJ 16 ERJ N7 N3 N 0 1 Y N N -14.736 14.147 16.554 -0.966 -1.155 0.195 N7 ERJ 17 ERJ N9 N4 N 0 1 Y N N -13.335 13.200 15.217 0.869 -0.053 -0.237 N9 ERJ 18 ERJ "O2'" O1 O 0 1 N N N -12.643 10.002 14.426 2.706 2.241 0.955 "O2'" ERJ 19 ERJ "O3'" O2 O 0 1 N N N -12.929 9.833 11.841 5.126 1.589 0.259 "O3'" ERJ 20 ERJ "O4'" O3 O 0 1 N N N -13.097 13.148 12.926 3.044 -0.975 -0.610 "O4'" ERJ 21 ERJ "O5'" O4 O 0 1 N N N -13.356 14.122 10.350 5.178 -2.952 -0.616 "O5'" ERJ 22 ERJ S21 S1 S 0 1 Y N N -14.580 17.494 20.726 -5.611 -1.730 0.180 S21 ERJ 23 ERJ H1 H1 H 0 1 N N N -15.445 12.823 15.044 0.900 -2.136 0.372 H1 ERJ 24 ERJ H2 H2 H 0 1 N N N -12.166 17.223 19.895 -3.303 -1.891 -0.729 H2 ERJ 25 ERJ H3 H3 H 0 1 N N N -16.840 16.540 20.309 -6.943 0.177 1.195 H3 ERJ 26 ERJ H4 H4 H 0 1 N N N -11.720 12.290 14.219 2.446 0.929 -1.240 H4 ERJ 27 ERJ H5 H5 H 0 1 N N N -9.754 15.187 17.196 -1.490 3.711 -1.202 H5 ERJ 28 ERJ H6 H6 H 0 1 N N N -14.437 11.036 14.403 2.457 0.343 1.774 H6 ERJ 29 ERJ H7 H7 H 0 1 N N N -15.692 15.214 18.315 -4.955 1.729 0.875 H7 ERJ 30 ERJ H8 H8 H 0 1 N N N -14.740 10.860 12.149 4.797 0.142 1.715 H8 ERJ 31 ERJ H9 H9 H 0 1 N N N -12.057 12.042 11.494 4.963 -0.389 -1.151 H9 ERJ 32 ERJ H10 H10 H 0 1 N N N -14.925 12.917 10.943 6.049 -1.662 0.743 H10 ERJ 33 ERJ H11 H11 H 0 1 N N N -13.769 12.179 9.783 4.440 -2.278 1.193 H11 ERJ 34 ERJ H12 H12 H 0 1 N N N -12.545 10.112 15.365 3.063 2.653 1.754 H12 ERJ 35 ERJ H13 H13 H 0 1 N N N -13.281 9.019 12.183 6.072 1.421 0.151 H13 ERJ 36 ERJ H14 H14 H 0 1 N N N -13.848 14.489 9.625 5.582 -3.766 -0.287 H14 ERJ 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ERJ "O5'" "C5'" SING N N 1 ERJ "C5'" "C4'" SING N N 2 ERJ "C4'" "C3'" SING N N 3 ERJ "C4'" "O4'" SING N N 4 ERJ "O3'" "C3'" SING N N 5 ERJ "C3'" "C2'" SING N N 6 ERJ "O4'" "C1'" SING N N 7 ERJ "C2'" "C1'" SING N N 8 ERJ "C2'" "O2'" SING N N 9 ERJ "C1'" N9 SING N N 10 ERJ N9 C8 SING Y N 11 ERJ N9 C4 SING Y N 12 ERJ C8 N7 DOUB Y N 13 ERJ C4 N3 DOUB Y N 14 ERJ C4 C5 SING Y N 15 ERJ N3 C2 SING Y N 16 ERJ N7 C5 SING Y N 17 ERJ C5 C6 DOUB Y N 18 ERJ C2 N1 DOUB Y N 19 ERJ C6 N1 SING Y N 20 ERJ C6 C19 SING N N 21 ERJ C19 C23 SING Y N 22 ERJ C19 C20 DOUB Y N 23 ERJ C23 C22 DOUB Y N 24 ERJ C20 S21 SING Y N 25 ERJ C22 S21 SING Y N 26 ERJ C8 H1 SING N N 27 ERJ C20 H2 SING N N 28 ERJ C22 H3 SING N N 29 ERJ "C1'" H4 SING N N 30 ERJ C2 H5 SING N N 31 ERJ "C2'" H6 SING N N 32 ERJ C23 H7 SING N N 33 ERJ "C3'" H8 SING N N 34 ERJ "C4'" H9 SING N N 35 ERJ "C5'" H10 SING N N 36 ERJ "C5'" H11 SING N N 37 ERJ "O2'" H12 SING N N 38 ERJ "O3'" H13 SING N N 39 ERJ "O5'" H14 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ERJ SMILES ACDLabs 12.01 "n1c(c2c(nc1)n(cn2)C3C(O)C(C(O3)CO)O)c4cscc4" ERJ InChI InChI 1.03 "InChI=1S/C14H14N4O4S/c19-3-8-11(20)12(21)14(22-8)18-6-17-10-9(7-1-2-23-4-7)15-5-16-13(10)18/h1-2,4-6,8,11-12,14,19-21H,3H2/t8-,11-,12-,14-/m1/s1" ERJ InChIKey InChI 1.03 UXKNTUXJYSDVTH-LHNIVKCTSA-N ERJ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c2ncnc3c4cscc4" ERJ SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c2ncnc3c4cscc4" ERJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cscc1c2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O" ERJ SMILES "OpenEye OEToolkits" 2.0.6 "c1cscc1c2c3c(ncn2)n(cn3)C4C(C(C(O4)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ERJ "SYSTEMATIC NAME" ACDLabs 12.01 "9-beta-D-ribofuranosyl-6-(thiophen-3-yl)-9H-purine" ERJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-(6-thiophen-3-ylpurin-9-yl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ERJ "Create component" 2018-01-30 RCSB ERJ "Initial release" 2019-05-01 RCSB ##