data_ERP # _chem_comp.id ERP _chem_comp.name "6-[([1,1'-biphenyl]-4-yl)ethynyl]-9-beta-D-ribofuranosyl-9H-purine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H20 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-30 _chem_comp.pdbx_modified_date 2019-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 428.440 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ERP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C9S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ERP N1 N1 N 0 1 Y N N 1.854 3.891 11.208 0.716 2.978 -0.440 N1 ERP 1 ERP N3 N2 N 0 1 Y N N 1.686 5.665 9.788 2.974 2.480 -0.476 N3 ERP 2 ERP C4 C1 C 0 1 Y N N 2.944 6.016 10.010 2.738 1.179 -0.362 C4 ERP 3 ERP C5 C2 C 0 1 Y N N 3.693 5.279 10.843 1.406 0.729 -0.281 C5 ERP 4 ERP C6 C3 C 0 1 Y N N 3.092 4.151 11.456 0.377 1.692 -0.325 C6 ERP 5 ERP C8 C4 C 0 1 Y N N 4.863 6.869 10.091 2.686 -1.018 -0.184 C8 ERP 6 ERP C20 C5 C 0 1 N N N 4.555 2.604 13.154 -2.126 0.978 -0.182 C20 ERP 7 ERP C21 C6 C 0 1 Y N N 5.392 1.721 14.122 -3.501 0.586 -0.104 C21 ERP 8 ERP C22 C7 C 0 1 Y N N 4.860 0.524 14.614 -4.510 1.555 -0.154 C22 ERP 9 ERP C24 C8 C 0 1 Y N N 6.876 0.122 15.863 -6.164 -0.173 0.046 C24 ERP 10 ERP C26 C9 C 0 1 Y N N 6.648 2.116 14.494 -3.838 -0.766 0.017 C26 ERP 11 ERP C28 C10 C 0 1 Y N N 7.669 -0.513 18.180 -7.925 -1.926 0.252 C28 ERP 12 ERP "C1'" C11 C 0 1 N N R 3.322 7.934 8.597 4.984 0.011 -0.345 "C1'" ERP 13 ERP C19 C12 C 0 1 N N N 3.937 3.256 12.438 -0.999 1.300 -0.246 C19 ERP 14 ERP C2 C13 C 0 1 Y N N 1.156 4.629 10.398 1.980 3.345 -0.512 C2 ERP 15 ERP "C2'" C14 C 0 1 N N R 3.952 9.418 8.617 5.582 0.237 1.067 "C2'" ERP 16 ERP C23 C15 C 0 1 Y N N 5.617 -0.274 15.490 -5.830 1.176 -0.079 C23 ERP 17 ERP C25 C16 C 0 1 Y N N 7.407 1.314 15.375 -5.160 -1.141 0.091 C25 ERP 18 ERP C27 C17 C 0 1 Y N N 7.705 -0.755 16.826 -7.588 -0.579 0.127 C27 ERP 19 ERP C29 C18 C 0 1 Y N N 8.404 -1.289 19.033 -9.252 -2.297 0.327 C29 ERP 20 ERP "C3'" C19 C 0 1 N N S 4.374 9.669 7.447 6.963 -0.452 0.949 "C3'" ERP 21 ERP C30 C20 C 0 1 Y N N 9.198 -2.340 18.524 -10.246 -1.336 0.283 C30 ERP 22 ERP C31 C21 C 0 1 Y N N 9.233 -2.583 17.167 -9.917 0.002 0.164 C31 ERP 23 ERP C32 C22 C 0 1 Y N N 8.501 -1.807 16.316 -8.594 0.385 0.077 C32 ERP 24 ERP "C4'" C23 C 0 1 N N R 4.060 8.439 6.586 6.802 -1.420 -0.239 "C4'" ERP 25 ERP "C5'" C24 C 0 1 N N N 5.127 8.188 5.728 7.085 -2.853 0.216 "C5'" ERP 26 ERP N7 N3 N 0 1 Y N N 4.867 5.834 10.863 1.446 -0.618 -0.174 N7 ERP 27 ERP N9 N4 N 0 1 Y N N 3.697 7.008 9.578 3.521 0.053 -0.299 N9 ERP 28 ERP "O2'" O1 O 0 1 N N N 2.847 10.151 9.089 5.729 1.632 1.342 "O2'" ERP 29 ERP "O3'" O2 O 0 1 N N N 3.823 10.786 6.679 7.982 0.513 0.677 "O3'" ERP 30 ERP "O4'" O3 O 0 1 N N N 3.906 7.416 7.628 5.444 -1.312 -0.697 "O4'" ERP 31 ERP "O5'" O4 O 0 1 N N N 4.745 7.298 4.719 7.047 -3.727 -0.914 "O5'" ERP 32 ERP H1 H1 H 0 1 N N N 5.708 7.515 9.907 3.006 -2.047 -0.112 H1 ERP 33 ERP H2 H2 H 0 1 N N N 3.868 0.213 14.321 -4.252 2.599 -0.251 H2 ERP 34 ERP H3 H3 H 0 1 N N N 7.059 3.040 14.114 -3.061 -1.516 0.051 H3 ERP 35 ERP H4 H4 H 0 1 N N N 7.060 0.290 18.569 -7.150 -2.677 0.287 H4 ERP 36 ERP H5 H5 H 0 1 N N N 2.229 8.009 8.496 5.367 0.752 -1.046 H5 ERP 37 ERP H6 H6 H 0 1 N N N 0.118 4.386 10.222 2.210 4.396 -0.605 H6 ERP 38 ERP H7 H7 H 0 1 N N N 4.758 9.425 9.365 4.970 -0.245 1.830 H7 ERP 39 ERP H8 H8 H 0 1 N N N 5.207 -1.199 15.869 -6.609 1.923 -0.118 H8 ERP 40 ERP H9 H9 H 0 1 N N N 8.398 1.625 15.670 -5.421 -2.185 0.185 H9 ERP 41 ERP H10 H10 H 0 1 N N N 8.377 -1.098 20.096 -9.515 -3.341 0.420 H10 ERP 42 ERP H11 H11 H 0 1 N N N 5.468 9.779 7.452 7.194 -1.002 1.861 H11 ERP 43 ERP H12 H12 H 0 1 N N N 9.778 -2.954 19.198 -11.283 -1.632 0.342 H12 ERP 44 ERP H13 H13 H 0 1 N N N 9.840 -3.387 16.778 -10.697 0.748 0.130 H13 ERP 45 ERP H14 H14 H 0 1 N N N 8.529 -1.996 15.253 -8.338 1.430 -0.020 H14 ERP 46 ERP H15 H15 H 0 1 N N N 3.116 8.591 6.041 7.487 -1.141 -1.040 H15 ERP 47 ERP H16 H16 H 0 1 N N N 5.957 7.750 6.301 8.071 -2.900 0.679 H16 ERP 48 ERP H17 H17 H 0 1 N N N 5.455 9.134 5.272 6.329 -3.161 0.938 H17 ERP 49 ERP H18 H18 H 0 1 N N N 2.633 9.869 9.971 6.100 1.824 2.214 H18 ERP 50 ERP H19 H19 H 0 1 N N N 3.976 11.599 7.147 8.868 0.136 0.593 H19 ERP 51 ERP H20 H20 H 0 1 N N N 5.483 7.137 4.142 7.219 -4.655 -0.700 H20 ERP 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ERP "O5'" "C5'" SING N N 1 ERP "C5'" "C4'" SING N N 2 ERP "C4'" "C3'" SING N N 3 ERP "C4'" "O4'" SING N N 4 ERP "O3'" "C3'" SING N N 5 ERP "C3'" "C2'" SING N N 6 ERP "O4'" "C1'" SING N N 7 ERP "C1'" "C2'" SING N N 8 ERP "C1'" N9 SING N N 9 ERP "C2'" "O2'" SING N N 10 ERP N9 C4 SING Y N 11 ERP N9 C8 SING Y N 12 ERP N3 C4 DOUB Y N 13 ERP N3 C2 SING Y N 14 ERP C4 C5 SING Y N 15 ERP C8 N7 DOUB Y N 16 ERP C2 N1 DOUB Y N 17 ERP C5 N7 SING Y N 18 ERP C5 C6 DOUB Y N 19 ERP N1 C6 SING Y N 20 ERP C6 C19 SING N N 21 ERP C19 C20 TRIP N N 22 ERP C20 C21 SING N N 23 ERP C21 C26 DOUB Y N 24 ERP C21 C22 SING Y N 25 ERP C26 C25 SING Y N 26 ERP C22 C23 DOUB Y N 27 ERP C25 C24 DOUB Y N 28 ERP C23 C24 SING Y N 29 ERP C24 C27 SING N N 30 ERP C32 C27 DOUB Y N 31 ERP C32 C31 SING Y N 32 ERP C27 C28 SING Y N 33 ERP C31 C30 DOUB Y N 34 ERP C28 C29 DOUB Y N 35 ERP C30 C29 SING Y N 36 ERP C8 H1 SING N N 37 ERP C22 H2 SING N N 38 ERP C26 H3 SING N N 39 ERP C28 H4 SING N N 40 ERP "C1'" H5 SING N N 41 ERP C2 H6 SING N N 42 ERP "C2'" H7 SING N N 43 ERP C23 H8 SING N N 44 ERP C25 H9 SING N N 45 ERP C29 H10 SING N N 46 ERP "C3'" H11 SING N N 47 ERP C30 H12 SING N N 48 ERP C31 H13 SING N N 49 ERP C32 H14 SING N N 50 ERP "C4'" H15 SING N N 51 ERP "C5'" H16 SING N N 52 ERP "C5'" H17 SING N N 53 ERP "O2'" H18 SING N N 54 ERP "O3'" H19 SING N N 55 ERP "O5'" H20 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ERP SMILES ACDLabs 12.01 "n1c(c2c(nc1)n(cn2)C3C(O)C(C(O3)CO)O)C#Cc5ccc(c4ccccc4)cc5" ERP InChI InChI 1.03 "InChI=1S/C24H20N4O4/c29-12-19-21(30)22(31)24(32-19)28-14-27-20-18(25-13-26-23(20)28)11-8-15-6-9-17(10-7-15)16-4-2-1-3-5-16/h1-7,9-10,13-14,19,21-22,24,29-31H,12H2/t19-,21-,22-,24-/m1/s1" ERP InChIKey InChI 1.03 VJQTZOVBQVSIJJ-VDEHWKIFSA-N ERP SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(ncnc23)C#Cc4ccc(cc4)c5ccccc5" ERP SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(ncnc23)C#Cc4ccc(cc4)c5ccccc5" ERP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2ccc(cc2)C#Cc3c4c(ncn3)n(cn4)[C@H]5[C@@H]([C@@H]([C@H](O5)CO)O)O" ERP SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2ccc(cc2)C#Cc3c4c(ncn3)n(cn4)C5C(C(C(O5)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ERP "SYSTEMATIC NAME" ACDLabs 12.01 "6-[([1,1'-biphenyl]-4-yl)ethynyl]-9-beta-D-ribofuranosyl-9H-purine" ERP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-[6-[2-(4-phenylphenyl)ethynyl]purin-9-yl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ERP "Create component" 2018-01-30 RCSB ERP "Initial release" 2019-05-01 RCSB ##