data_ERS # _chem_comp.id ERS _chem_comp.name "(2R,3S,4R,5R)-2-(hydroxymethyl)-5-[6-(4-phenylpiperazin-1-yl)-9H-purin-9-yl]tetrahydrofuran-3,4-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-30 _chem_comp.pdbx_modified_date 2019-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ERS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C9V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ERS N1 N1 N 0 1 Y N N 2.942 -2.488 11.339 -1.458 1.830 -0.742 N1 ERS 1 ERS N3 N2 N 0 1 Y N N 4.727 -2.329 9.837 0.581 1.045 -1.496 N3 ERS 2 ERS C4 C1 C 0 1 Y N N 5.100 -3.618 10.085 0.951 0.701 -0.266 C4 ERS 3 ERS C5 C2 C 0 1 Y N N 4.412 -4.369 10.988 0.068 0.932 0.802 C5 ERS 4 ERS C6 C3 C 0 1 Y N N 3.271 -3.751 11.629 -1.176 1.520 0.519 C6 ERS 5 ERS C8 C4 C 0 1 Y N N 6.022 -5.607 10.178 1.856 0.024 1.627 C8 ERS 6 ERS C20 C5 C 0 1 N N N 2.773 -5.803 13.032 -2.401 0.544 2.274 C20 ERS 7 ERS C21 C6 C 0 1 N N N 2.323 -5.968 14.490 -3.104 -0.447 1.344 C21 ERS 8 ERS C24 C7 C 0 1 N N N 1.054 -4.100 12.761 -3.310 2.388 0.997 C24 ERS 9 ERS C26 C8 C 0 1 Y N N -1.337 -6.239 13.941 -6.224 -0.344 -0.590 C26 ERS 10 ERS C28 C9 C 0 1 Y N N -2.083 -8.508 14.248 -6.441 -2.522 -1.562 C28 ERS 11 ERS "C1'" C10 C 0 1 N N R 7.030 -3.957 8.553 3.272 -0.295 -0.438 "C1'" ERS 12 ERS C2 C11 C 0 1 Y N N 3.656 -1.813 10.446 -0.595 1.594 -1.714 C2 ERS 13 ERS "C2'" C12 C 0 1 N N R 8.480 -4.448 8.676 4.245 0.897 -0.623 "C2'" ERS 14 ERS C23 C13 C 0 1 N N N 0.680 -4.229 14.237 -4.013 1.397 0.066 C23 ERS 15 ERS C25 C14 C 0 1 Y N N -0.136 -6.590 14.545 -5.034 -0.733 0.012 C25 ERS 16 ERS C27 C15 C 0 1 Y N N -2.316 -7.198 13.782 -6.924 -1.240 -1.375 C27 ERS 17 ERS C29 C16 C 0 1 Y N N -0.879 -8.848 14.858 -5.251 -2.908 -0.973 C29 ERS 18 ERS "C3'" C17 C 0 1 N N S 8.845 -4.897 7.231 5.608 0.181 -0.781 "C3'" ERS 19 ERS C30 C18 C 0 1 Y N N 0.102 -7.900 15.019 -4.549 -2.019 -0.183 C30 ERS 20 ERS "C4'" C19 C 0 1 N N R 7.588 -4.609 6.419 5.381 -1.208 -0.153 "C4'" ERS 21 ERS "C5'" C20 C 0 1 N N N 7.257 -5.674 5.396 6.369 -1.428 0.994 "C5'" ERS 22 ERS N19 N3 N 0 1 N N N 2.463 -4.461 12.585 -2.087 1.772 1.530 N19 ERS 23 ERS N22 N4 N 0 1 N N N 0.918 -5.584 14.709 -4.327 0.169 0.810 N22 ERS 24 ERS N7 N5 N 0 1 Y N N 5.001 -5.615 11.028 0.682 0.496 1.928 N7 ERS 25 ERS N9 N6 N 0 1 Y N N 6.120 -4.371 9.613 2.069 0.128 0.284 N9 ERS 26 ERS "O2'" O1 O 0 1 N N N 9.313 -3.453 9.213 3.921 1.642 -1.799 "O2'" ERS 27 ERS "O3'" O2 O 0 1 N N N 9.948 -4.153 6.683 5.951 0.058 -2.163 "O3'" ERS 28 ERS "O4'" O3 O 0 1 N N N 6.528 -4.566 7.372 4.035 -1.233 0.350 "O4'" ERS 29 ERS "O5'" O4 O 0 1 N N N 6.137 -5.284 4.597 6.230 -2.759 1.494 "O5'" ERS 30 ERS H1 H1 H 0 1 N N N 6.670 -6.445 9.969 2.559 -0.389 2.335 H1 ERS 31 ERS H2 H2 H 0 1 N N N 2.245 -6.532 12.400 -3.056 0.784 3.112 H2 ERS 32 ERS H3 H3 H 0 1 N N N 3.857 -5.973 12.961 -1.479 0.100 2.649 H3 ERS 33 ERS H4 H4 H 0 1 N N N 2.446 -7.023 14.777 -2.439 -0.707 0.520 H4 ERS 34 ERS H5 H5 H 0 1 N N N 2.961 -5.338 15.127 -3.364 -1.347 1.900 H5 ERS 35 ERS H6 H6 H 0 1 N N N 0.897 -3.062 12.431 -3.050 3.289 0.440 H6 ERS 36 ERS H7 H7 H 0 1 N N N 0.424 -4.774 12.162 -3.975 2.649 1.820 H7 ERS 37 ERS H8 H8 H 0 1 N N N -1.502 -5.228 13.600 -6.604 0.656 -0.441 H8 ERS 38 ERS H9 H9 H 0 1 N N N -2.850 -9.259 14.130 -6.988 -3.219 -2.179 H9 ERS 39 ERS H10 H10 H 0 1 N N N 7.028 -2.861 8.457 3.006 -0.727 -1.403 H10 ERS 40 ERS H11 H11 H 0 1 N N N 3.358 -0.804 10.202 -0.865 1.861 -2.725 H11 ERS 41 ERS H12 H12 H 0 1 N N N 8.490 -5.338 9.322 4.243 1.541 0.256 H12 ERS 42 ERS H13 H13 H 0 1 N N N 1.289 -3.528 14.827 -4.935 1.842 -0.308 H13 ERS 43 ERS H14 H14 H 0 1 N N N -0.385 -3.984 14.363 -3.358 1.158 -0.772 H14 ERS 44 ERS H15 H15 H 0 1 N N N -3.252 -6.948 13.305 -7.850 -0.939 -1.843 H15 ERS 45 ERS H16 H16 H 0 1 N N N -0.716 -9.858 15.205 -4.869 -3.906 -1.132 H16 ERS 46 ERS H17 H17 H 0 1 N N N 9.054 -5.977 7.225 6.387 0.720 -0.243 H17 ERS 47 ERS H18 H18 H 0 1 N N N 1.037 -8.151 15.498 -3.624 -2.325 0.283 H18 ERS 48 ERS H19 H19 H 0 1 N N N 7.696 -3.638 5.914 5.509 -1.982 -0.909 H19 ERS 49 ERS H20 H20 H 0 1 N N N 7.018 -6.612 5.918 7.386 -1.281 0.630 H20 ERS 50 ERS H21 H21 H 0 1 N N N 8.128 -5.829 4.743 6.163 -0.716 1.793 H21 ERS 51 ERS H22 H22 H 0 1 N N N 9.024 -3.237 10.092 4.502 2.398 -1.957 H22 ERS 52 ERS H23 H23 H 0 1 N N N 10.733 -4.331 7.188 6.797 -0.384 -2.320 H23 ERS 53 ERS H24 H24 H 0 1 N N N 5.947 -5.966 3.963 6.827 -2.970 2.224 H24 ERS 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ERS "O5'" "C5'" SING N N 1 ERS "C5'" "C4'" SING N N 2 ERS "C4'" "C3'" SING N N 3 ERS "C4'" "O4'" SING N N 4 ERS "O3'" "C3'" SING N N 5 ERS "C3'" "C2'" SING N N 6 ERS "O4'" "C1'" SING N N 7 ERS "C1'" "C2'" SING N N 8 ERS "C1'" N9 SING N N 9 ERS "C2'" "O2'" SING N N 10 ERS N9 C4 SING Y N 11 ERS N9 C8 SING Y N 12 ERS N3 C4 DOUB Y N 13 ERS N3 C2 SING Y N 14 ERS C4 C5 SING Y N 15 ERS C8 N7 DOUB Y N 16 ERS C2 N1 DOUB Y N 17 ERS C5 N7 SING Y N 18 ERS C5 C6 DOUB Y N 19 ERS N1 C6 SING Y N 20 ERS C6 N19 SING N N 21 ERS N19 C24 SING N N 22 ERS N19 C20 SING N N 23 ERS C24 C23 SING N N 24 ERS C20 C21 SING N N 25 ERS C27 C26 DOUB Y N 26 ERS C27 C28 SING Y N 27 ERS C26 C25 SING Y N 28 ERS C23 N22 SING N N 29 ERS C28 C29 DOUB Y N 30 ERS C21 N22 SING N N 31 ERS C25 N22 SING N N 32 ERS C25 C30 DOUB Y N 33 ERS C29 C30 SING Y N 34 ERS C8 H1 SING N N 35 ERS C20 H2 SING N N 36 ERS C20 H3 SING N N 37 ERS C21 H4 SING N N 38 ERS C21 H5 SING N N 39 ERS C24 H6 SING N N 40 ERS C24 H7 SING N N 41 ERS C26 H8 SING N N 42 ERS C28 H9 SING N N 43 ERS "C1'" H10 SING N N 44 ERS C2 H11 SING N N 45 ERS "C2'" H12 SING N N 46 ERS C23 H13 SING N N 47 ERS C23 H14 SING N N 48 ERS C27 H15 SING N N 49 ERS C29 H16 SING N N 50 ERS "C3'" H17 SING N N 51 ERS C30 H18 SING N N 52 ERS "C4'" H19 SING N N 53 ERS "C5'" H20 SING N N 54 ERS "C5'" H21 SING N N 55 ERS "O2'" H22 SING N N 56 ERS "O3'" H23 SING N N 57 ERS "O5'" H24 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ERS SMILES ACDLabs 12.01 "n1c(c2c(nc1)n(cn2)C3C(O)C(C(O3)CO)O)N4CCN(CC4)c5ccccc5" ERS InChI InChI 1.03 "InChI=1S/C20H24N6O4/c27-10-14-16(28)17(29)20(30-14)26-12-23-15-18(21-11-22-19(15)26)25-8-6-24(7-9-25)13-4-2-1-3-5-13/h1-5,11-12,14,16-17,20,27-29H,6-10H2/t14-,16-,17-,20-/m1/s1" ERS InChIKey InChI 1.03 FVRJZHPJEJJPPT-WVSUBDOOSA-N ERS SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(ncnc23)N4CCN(CC4)c5ccccc5" ERS SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(ncnc23)N4CCN(CC4)c5ccccc5" ERS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)N2CCN(CC2)c3c4c(ncn3)n(cn4)[C@H]5[C@@H]([C@@H]([C@H](O5)CO)O)O" ERS SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)N2CCN(CC2)c3c4c(ncn3)n(cn4)C5C(C(C(O5)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ERS "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S,4R,5R)-2-(hydroxymethyl)-5-[6-(4-phenylpiperazin-1-yl)-9H-purin-9-yl]tetrahydrofuran-3,4-diol (non-preferred name)" ERS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-[6-(4-phenylpiperazin-1-yl)purin-9-yl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ERS "Create component" 2018-01-30 RCSB ERS "Initial release" 2019-05-01 RCSB ##