data_ERT # _chem_comp.id ERT _chem_comp.name "METHYL (4R)-2-ETHYL-2,5,12-TRIHYDROXY-7-METHOXY-6,11-DIOXO-4-{[2,3,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-RIBO-HEXOPYRANOSYL]OXY}-1H,2H,3H,4H,6H,11H-TETRACENE-1-CARBOXYLATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H37 N O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-METHOXY-E-RHODOMYCIN T" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-06 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 599.626 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ERT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TW3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ERT O11 O11 O 0 1 N N N 63.068 0.550 39.955 -2.011 2.838 -1.506 O11 ERT 1 ERT C11 C11 C 0 1 Y N N 61.942 0.418 39.439 -1.669 1.710 -0.837 C11 ERT 2 ERT C18 C18 C 0 1 Y N N 61.559 1.332 38.456 -2.611 0.702 -0.654 C18 ERT 3 ERT C17 C17 C 0 1 Y N N 60.223 1.160 37.865 -2.247 -0.470 0.043 C17 ERT 4 ERT C6 C6 C 0 1 Y N N 59.429 0.110 38.300 -0.950 -0.600 0.531 C6 ERT 5 ERT O6 O6 O 0 1 N N N 58.238 -0.049 37.755 -0.592 -1.724 1.199 O6 ERT 6 ERT C5 C5 C 0 1 N N N 59.780 2.113 36.819 -3.242 -1.540 0.243 C5 ERT 7 ERT O5 O5 O 0 1 N N N 58.651 2.001 36.281 -2.892 -2.645 0.612 O5 ERT 8 ERT C16 C16 C 0 1 Y N N 60.708 3.205 36.418 -4.668 -1.254 -0.009 C16 ERT 9 ERT C4 C4 C 0 1 Y N N 60.331 4.141 35.440 -5.659 -2.131 0.438 C4 ERT 10 ERT O4 O4 O 0 1 N N N 59.120 4.110 34.857 -5.320 -3.259 1.110 O4 ERT 11 ERT C40 C40 C 0 1 N N N 58.803 3.443 33.645 -6.539 -3.934 1.427 C40 ERT 12 ERT C3 C3 C 0 1 Y N N 61.207 5.154 35.073 -6.998 -1.841 0.190 C3 ERT 13 ERT C2 C2 C 0 1 Y N N 62.450 5.239 35.677 -7.348 -0.694 -0.494 C2 ERT 14 ERT C15 C15 C 0 1 Y N N 61.963 3.285 37.029 -5.033 -0.086 -0.705 C15 ERT 15 ERT C1 C1 C 0 1 Y N N 62.826 4.311 36.643 -6.375 0.184 -0.943 C1 ERT 16 ERT C12 C12 C 0 1 N N N 62.374 2.392 38.024 -3.983 0.843 -1.176 C12 ERT 17 ERT O12 O12 O 0 1 N N N 63.511 2.551 38.531 -4.247 1.712 -1.984 O12 ERT 18 ERT C19 C19 C 0 1 Y N N 61.115 -0.636 39.860 -0.368 1.566 -0.333 C19 ERT 19 ERT C10 C10 C 0 1 N N R 61.610 -1.564 40.932 0.590 2.708 -0.558 C10 ERT 20 ERT C21 C21 C 0 1 N N N 61.788 -0.750 42.218 0.277 3.817 0.413 C21 ERT 21 ERT O13 O13 O 0 1 N N N 60.765 0.116 42.702 0.948 3.955 1.409 O13 ERT 22 ERT O10 O10 O 0 1 N N N 62.987 -0.936 42.971 -0.747 4.651 0.173 O10 ERT 23 ERT C22 C22 C 0 1 N N N 63.190 0.027 44.016 -1.048 5.720 1.109 C22 ERT 24 ERT C20 C20 C 0 1 Y N N 59.851 -0.771 39.292 -0.012 0.424 0.338 C20 ERT 25 ERT C7 C7 C 0 1 N N S 58.935 -1.880 39.679 1.372 0.208 0.893 C7 ERT 26 ERT C8 C8 C 0 1 N N N 59.245 -2.406 41.071 2.122 1.534 1.002 C8 ERT 27 ERT C9 C9 C 0 1 N N R 60.711 -2.771 41.250 2.032 2.251 -0.351 C9 ERT 28 ERT C13 C13 C 0 1 N N N 60.827 -3.278 42.695 2.963 3.465 -0.354 C13 ERT 29 ERT C14 C14 C 0 1 N N N 62.161 -3.939 43.006 4.390 3.013 -0.035 C14 ERT 30 ERT O9 O9 O 0 1 N N N 61.091 -3.869 40.399 2.407 1.353 -1.397 O9 ERT 31 ERT O7 O7 O 0 1 N N N 59.087 -2.928 38.707 2.094 -0.671 0.028 O7 ERT 32 ERT "C1'" C1* C 0 1 N N R 57.952 -3.770 38.484 2.558 -1.755 0.835 "C1'" ERT 33 ERT "C2'" C2* C 0 1 N N N 57.262 -3.371 37.182 3.205 -2.815 -0.060 "C2'" ERT 34 ERT "C3'" C3* C 0 1 N N S 58.203 -3.622 36.006 4.367 -2.176 -0.829 "C3'" ERT 35 ERT "N3'" N3* N 0 1 N N N 57.516 -3.121 34.794 5.093 -3.213 -1.576 "N3'" ERT 36 ERT "C7'" C7* C 0 1 N N N 57.753 -1.924 34.444 4.127 -3.821 -2.501 "C7'" ERT 37 ERT "C8'" C8* C 0 1 N N N 56.687 -3.804 34.110 6.089 -2.518 -2.402 "C8'" ERT 38 ERT "C4'" C4* C 0 1 N N S 58.596 -5.105 35.962 5.311 -1.506 0.176 "C4'" ERT 39 ERT "O4'" O4* O 0 1 N N N 57.487 -5.971 35.773 5.924 -2.503 0.994 "O4'" ERT 40 ERT "C5'" C5* C 0 1 N N S 59.267 -5.432 37.300 4.504 -0.545 1.053 "C5'" ERT 41 ERT "O5'" O5* O 0 1 N N N 58.371 -5.143 38.390 3.514 -1.271 1.776 "O5'" ERT 42 ERT "C6'" C6* C 0 1 N N N 59.725 -6.889 37.401 5.443 0.153 2.038 "C6'" ERT 43 ERT H11 H11 H 0 1 N N N 63.329 -0.072 40.624 -2.346 3.463 -0.848 H11 ERT 44 ERT HO6 HO6 H 0 1 N N N 57.694 -0.768 38.053 -0.780 -1.566 2.134 HO6 ERT 45 ERT H401 1H40 H 0 0 N N N 59.120 2.382 33.775 -7.162 -3.288 2.045 H401 ERT 46 ERT H402 2H40 H 0 0 N N N 57.799 3.417 33.162 -7.069 -4.177 0.506 H402 ERT 47 ERT H403 3H40 H 0 0 N N N 59.515 3.826 32.877 -6.315 -4.852 1.971 H403 ERT 48 ERT H4 H4 H 0 1 N N N 60.916 5.889 34.304 -7.766 -2.517 0.534 H4 ERT 49 ERT H3 H3 H 0 1 N N N 63.142 6.048 35.388 -8.390 -0.480 -0.681 H3 ERT 50 ERT H2 H2 H 0 1 N N N 63.822 4.390 37.109 -6.660 1.079 -1.476 H2 ERT 51 ERT H10 H10 H 0 1 N N N 62.559 -1.997 40.537 0.474 3.079 -1.576 H10 ERT 52 ERT H221 1H22 H 0 0 N N N 62.306 0.055 44.695 -1.905 6.288 0.748 H221 ERT 53 ERT H222 2H22 H 0 0 N N N 64.126 -0.118 44.604 -1.279 5.293 2.085 H222 ERT 54 ERT H223 3H22 H 0 0 N N N 63.148 1.062 43.603 -0.185 6.380 1.196 H223 ERT 55 ERT H7 H7 H 0 1 N N N 57.885 -1.505 39.702 1.296 -0.244 1.882 H7 ERT 56 ERT H81 1H8 H 0 1 N N N 58.585 -3.267 41.329 3.166 1.347 1.249 H81 ERT 57 ERT H82 2H8 H 0 1 N N N 58.915 -1.684 41.854 1.665 2.152 1.776 H82 ERT 58 ERT H131 1H13 H 0 0 N N N 59.982 -3.963 42.941 2.631 4.179 0.399 H131 ERT 59 ERT H132 2H13 H 0 0 N N N 60.617 -2.456 43.418 2.942 3.936 -1.337 H132 ERT 60 ERT H141 1H14 H 0 0 N N N 63.006 -3.254 42.760 4.411 2.542 0.947 H141 ERT 61 ERT H142 2H14 H 0 0 N N N 62.245 -4.307 44.055 4.722 2.299 -0.789 H142 ERT 62 ERT H143 3H14 H 0 0 N N N 62.371 -4.761 42.283 5.054 3.878 -0.038 H143 ERT 63 ERT HO9 HO9 H 0 1 N N N 60.536 -4.614 40.595 3.319 1.084 -1.221 HO9 ERT 64 ERT "H1'" H1* H 0 1 N N N 57.244 -3.653 39.337 1.716 -2.197 1.368 "H1'" ERT 65 ERT "H2'1" 1H2* H 0 0 N N N 56.892 -2.320 37.207 3.581 -3.632 0.555 "H2'1" ERT 66 ERT "H2'2" 2H2* H 0 0 N N N 56.280 -3.883 37.052 2.467 -3.196 -0.766 "H2'2" ERT 67 ERT "H3'" H3* H 0 1 N N N 59.172 -3.077 36.097 3.981 -1.429 -1.523 "H3'" ERT 68 ERT "H7'1" 1H7* H 0 0 N N N 58.853 -1.782 34.331 4.621 -4.600 -3.081 "H7'1" ERT 69 ERT "H7'2" 2H7* H 0 0 N N N 57.236 -1.547 33.531 3.304 -4.256 -1.933 "H7'2" ERT 70 ERT "H7'3" 3H7* H 0 0 N N N 57.542 -1.240 35.299 3.740 -3.057 -3.175 "H7'3" ERT 71 ERT "H8'1" 1H8* H 0 0 N N N 55.896 -4.156 34.812 6.767 -1.958 -1.759 "H8'1" ERT 72 ERT "H8'2" 2H8* H 0 0 N N N 56.170 -3.427 33.197 6.657 -3.249 -2.978 "H8'2" ERT 73 ERT "H8'3" 3H8* H 0 0 N N N 57.201 -4.752 33.826 5.584 -1.833 -3.082 "H8'3" ERT 74 ERT "H4'" H4* H 0 1 N N N 59.274 -5.267 35.092 6.080 -0.950 -0.361 "H4'" ERT 75 ERT H1 H1 H 0 1 N N N 57.730 -6.889 35.746 6.508 -2.039 1.610 H1 ERT 76 ERT "H5'" H5* H 0 1 N N N 60.176 -4.789 37.360 4.020 0.201 0.423 "H5'" ERT 77 ERT "H6'1" 1H6* H 0 0 N N N 60.390 -7.157 36.547 6.199 0.712 1.486 "H6'1" ERT 78 ERT "H6'2" 2H6* H 0 0 N N N 60.213 -7.127 38.375 4.869 0.838 2.664 "H6'2" ERT 79 ERT "H6'3" 3H6* H 0 0 N N N 58.879 -7.587 37.200 5.930 -0.592 2.667 "H6'3" ERT 80 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ERT O11 C11 SING N N 1 ERT O11 H11 SING N N 2 ERT C11 C18 DOUB Y N 3 ERT C11 C19 SING Y N 4 ERT C18 C17 SING Y N 5 ERT C18 C12 SING N N 6 ERT C17 C6 DOUB Y N 7 ERT C17 C5 SING N N 8 ERT C6 O6 SING N N 9 ERT C6 C20 SING Y N 10 ERT O6 HO6 SING N N 11 ERT C5 O5 DOUB N N 12 ERT C5 C16 SING N N 13 ERT C16 C4 DOUB Y N 14 ERT C16 C15 SING Y N 15 ERT C4 O4 SING N N 16 ERT C4 C3 SING Y N 17 ERT O4 C40 SING N N 18 ERT C40 H401 SING N N 19 ERT C40 H402 SING N N 20 ERT C40 H403 SING N N 21 ERT C3 C2 DOUB Y N 22 ERT C3 H4 SING N N 23 ERT C2 C1 SING Y N 24 ERT C2 H3 SING N N 25 ERT C15 C1 DOUB Y N 26 ERT C15 C12 SING N N 27 ERT C1 H2 SING N N 28 ERT C12 O12 DOUB N N 29 ERT C19 C10 SING N N 30 ERT C19 C20 DOUB Y N 31 ERT C10 C21 SING N N 32 ERT C10 C9 SING N N 33 ERT C10 H10 SING N N 34 ERT C21 O13 DOUB N N 35 ERT C21 O10 SING N N 36 ERT O10 C22 SING N N 37 ERT C22 H221 SING N N 38 ERT C22 H222 SING N N 39 ERT C22 H223 SING N N 40 ERT C20 C7 SING N N 41 ERT C7 C8 SING N N 42 ERT C7 O7 SING N N 43 ERT C7 H7 SING N N 44 ERT C8 C9 SING N N 45 ERT C8 H81 SING N N 46 ERT C8 H82 SING N N 47 ERT C9 C13 SING N N 48 ERT C9 O9 SING N N 49 ERT C13 C14 SING N N 50 ERT C13 H131 SING N N 51 ERT C13 H132 SING N N 52 ERT C14 H141 SING N N 53 ERT C14 H142 SING N N 54 ERT C14 H143 SING N N 55 ERT O9 HO9 SING N N 56 ERT O7 "C1'" SING N N 57 ERT "C1'" "C2'" SING N N 58 ERT "C1'" "O5'" SING N N 59 ERT "C1'" "H1'" SING N N 60 ERT "C2'" "C3'" SING N N 61 ERT "C2'" "H2'1" SING N N 62 ERT "C2'" "H2'2" SING N N 63 ERT "C3'" "N3'" SING N N 64 ERT "C3'" "C4'" SING N N 65 ERT "C3'" "H3'" SING N N 66 ERT "N3'" "C7'" SING N N 67 ERT "N3'" "C8'" SING N N 68 ERT "C7'" "H7'1" SING N N 69 ERT "C7'" "H7'2" SING N N 70 ERT "C7'" "H7'3" SING N N 71 ERT "C8'" "H8'1" SING N N 72 ERT "C8'" "H8'2" SING N N 73 ERT "C8'" "H8'3" SING N N 74 ERT "C4'" "O4'" SING N N 75 ERT "C4'" "C5'" SING N N 76 ERT "C4'" "H4'" SING N N 77 ERT "O4'" H1 SING N N 78 ERT "C5'" "O5'" SING N N 79 ERT "C5'" "C6'" SING N N 80 ERT "C5'" "H5'" SING N N 81 ERT "C6'" "H6'1" SING N N 82 ERT "C6'" "H6'2" SING N N 83 ERT "C6'" "H6'3" SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ERT SMILES ACDLabs 10.04 "O=C2c1c(O)c5c(c(O)c1C(=O)c3cccc(OC)c23)C(C(=O)OC)C(O)(CC5OC4OC(C(O)C(N(C)C)C4)C)CC" ERT SMILES_CANONICAL CACTVS 3.341 "CC[C@@]1(O)C[C@H](O[C@H]2C[C@@H]([C@H](O)[C@H](C)O2)N(C)C)c3c(O)c4C(=O)c5c(OC)cccc5C(=O)c4c(O)c3[C@H]1C(=O)OC" ERT SMILES CACTVS 3.341 "CC[C]1(O)C[CH](O[CH]2C[CH]([CH](O)[CH](C)O2)N(C)C)c3c(O)c4C(=O)c5c(OC)cccc5C(=O)c4c(O)c3[CH]1C(=O)OC" ERT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC[C@]1(C[C@@H](c2c(c(c3c(c2O)C(=O)c4c(cccc4OC)C3=O)O)[C@H]1C(=O)OC)O[C@H]5C[C@@H]([C@@H]([C@@H](O5)C)O)N(C)C)O" ERT SMILES "OpenEye OEToolkits" 1.5.0 "CCC1(CC(c2c(c(c3c(c2O)C(=O)c4c(cccc4OC)C3=O)O)C1C(=O)OC)OC5CC(C(C(O5)C)O)N(C)C)O" ERT InChI InChI 1.03 "InChI=1S/C31H37NO11/c1-7-31(39)12-17(43-18-11-15(32(3)4)25(33)13(2)42-18)20-21(24(31)30(38)41-6)29(37)22-23(28(20)36)27(35)19-14(26(22)34)9-8-10-16(19)40-5/h8-10,13,15,17-18,24-25,33,36-37,39H,7,11-12H2,1-6H3/t13-,15-,17-,18-,24-,25+,31+/m0/s1" ERT InChIKey InChI 1.03 XSSVYBYWQBNYOH-QJIXERIWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ERT "SYSTEMATIC NAME" ACDLabs 10.04 "methyl (1R,2R,4S)-2-ethyl-2,5,12-trihydroxy-7-methoxy-6,11-dioxo-4-{[2,3,6-trideoxy-3-(dimethylamino)-alpha-L-lyxo-hexopyranosyl]oxy}-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate" ERT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "methyl (1R,2R,4S)-4-[(2R,4S,5S,6S)-4-dimethylamino-5-hydroxy-6-methyl-oxan-2-yl]oxy-2-ethyl-2,5,12-trihydroxy-7-methoxy-6,11-dioxo-3,4-dihydro-1H-tetracene-1-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ERT "Create component" 2004-07-06 RCSB ERT "Modify descriptor" 2011-06-04 RCSB ERT "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ERT _pdbx_chem_comp_synonyms.name "4-METHOXY-E-RHODOMYCIN T" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##