data_EU9 # _chem_comp.id EU9 _chem_comp.name "[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3R)-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]-[(2-nitrophenyl)methyl]sulfanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 N7 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2020-01-24 _chem_comp.pdbx_modified_date 2020-10-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 520.539 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EU9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6LTV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EU9 O17 O1 O 0 1 N N N -18.085 34.679 -29.701 1.527 4.621 1.684 O17 EU9 1 EU9 C15 C1 C 0 1 N N N -17.454 33.983 -28.892 1.909 4.200 0.618 C15 EU9 2 EU9 O16 O2 O 0 1 N N N -16.354 34.266 -28.483 3.003 4.722 0.043 O16 EU9 3 EU9 C14 C2 C 0 1 N N R -18.184 32.848 -28.171 1.159 3.084 -0.064 C14 EU9 4 EU9 N18 N1 N 0 1 N N N -17.295 31.976 -27.446 -0.204 3.007 0.479 N18 EU9 5 EU9 C13 C3 C 0 1 N N N -19.346 32.307 -28.976 1.883 1.758 0.184 C13 EU9 6 EU9 C12 C4 C 0 1 N N N -19.713 30.834 -28.651 1.194 0.646 -0.609 C12 EU9 7 EU9 S11 S1 S 1 1 N N R -19.619 29.842 -29.999 1.953 -0.949 -0.197 S11 EU9 8 EU9 C7 C5 C 0 1 N N N -20.470 30.616 -31.233 3.346 -1.049 -1.355 C7 EU9 9 EU9 C3 C6 C 0 1 Y N N -20.304 30.501 -32.750 4.499 -0.237 -0.825 C3 EU9 10 EU9 C21 C7 C 0 1 Y N N -21.461 30.110 -33.476 4.703 1.052 -1.280 C21 EU9 11 EU9 C1 C8 C 0 1 Y N N -21.450 30.031 -34.876 5.761 1.798 -0.794 C1 EU9 12 EU9 C61 C9 C 0 1 Y N N -20.276 30.356 -35.572 6.615 1.254 0.147 C61 EU9 13 EU9 C51 C10 C 0 1 Y N N -19.120 30.727 -34.866 6.411 -0.035 0.603 C51 EU9 14 EU9 C41 C11 C 0 1 Y N N -19.122 30.855 -33.468 5.350 -0.778 0.121 C41 EU9 15 EU9 N8 N2 N 1 1 N N N -17.919 31.226 -32.827 5.131 -2.159 0.609 N8 EU9 16 EU9 O10 O3 O 0 1 N N N -17.907 31.697 -31.528 5.949 -2.681 1.345 O10 EU9 17 EU9 O9 O4 O -1 1 N N N -16.684 31.090 -33.477 4.133 -2.772 0.274 O9 EU9 18 EU9 C19 C12 C 0 1 N N N -20.599 28.568 -29.372 0.773 -2.149 -0.874 C19 EU9 19 EU9 C20 C13 C 0 1 N N S -20.597 27.287 -30.189 -0.479 -2.185 0.005 C20 EU9 20 EU9 O24 O5 O 0 1 N N N -20.862 27.535 -31.537 -1.225 -0.956 -0.133 O24 EU9 21 EU9 C23 C14 C 0 1 N N R -20.343 26.431 -32.301 -2.564 -1.272 0.304 C23 EU9 22 EU9 C22 C15 C 0 1 N N R -19.533 25.584 -31.328 -2.848 -2.675 -0.278 C22 EU9 23 EU9 O26 O6 O 0 1 N N N -20.298 24.440 -30.953 -3.609 -3.456 0.646 O26 EU9 24 EU9 C27 C16 C 0 1 N N S -19.296 26.550 -30.164 -1.445 -3.289 -0.480 C211 EU9 25 EU9 O25 O7 O 0 1 N N N -19.065 25.804 -28.987 -1.296 -4.468 0.313 O25 EU9 26 EU9 N9 N3 N 0 1 Y N N -19.440 26.907 -33.386 -3.518 -0.296 -0.228 N9 EU9 27 EU9 C8 C17 C 0 1 Y N N -18.128 27.216 -33.305 -3.348 0.476 -1.339 C8 EU9 28 EU9 N7 N4 N 0 1 Y N N -17.646 27.547 -34.539 -4.393 1.230 -1.520 N7 EU9 29 EU9 C5 C18 C 0 1 Y N N -18.676 27.500 -35.406 -5.298 0.990 -0.541 C5 EU9 30 EU9 C6 C19 C 0 1 Y N N -18.853 27.723 -36.767 -6.575 1.489 -0.232 C6 EU9 31 EU9 N6 N5 N 0 1 N N N -17.801 28.095 -37.553 -7.165 2.461 -1.020 N6 EU9 32 EU9 N1 N6 N 0 1 Y N N -20.054 27.516 -37.317 -7.202 1.006 0.835 N1 EU9 33 EU9 C2 C20 C 0 1 Y N N -21.112 27.148 -36.593 -6.646 0.078 1.594 C2 EU9 34 EU9 N3 N7 N 0 1 Y N N -21.032 26.915 -35.258 -5.453 -0.418 1.343 N3 EU9 35 EU9 C4 C21 C 0 1 Y N N -19.843 27.054 -34.638 -4.750 0.004 0.297 C4 EU9 36 EU9 H1 H1 H 0 1 N N N -16.070 35.083 -28.876 3.453 5.433 0.520 H1 EU9 37 EU9 H2 H2 H 0 1 N N N -18.699 33.389 -27.364 1.114 3.278 -1.135 H2 EU9 38 EU9 H3 H3 H 0 1 N N N -16.597 32.522 -26.982 -0.188 2.827 1.471 H3 EU9 39 EU9 H4 H4 H 0 1 N N N -17.817 31.456 -26.769 -0.723 3.846 0.271 H4 EU9 40 EU9 H6 H6 H 0 1 N N N -19.086 32.371 -30.043 2.920 1.845 -0.138 H6 EU9 41 EU9 H7 H7 H 0 1 N N N -20.227 32.935 -28.775 1.851 1.520 1.247 H7 EU9 42 EU9 H8 H8 H 0 1 N N N -20.741 30.804 -28.261 0.134 0.621 -0.355 H8 EU9 43 EU9 H9 H9 H 0 1 N N N -19.019 30.457 -27.886 1.307 0.837 -1.676 H9 EU9 44 EU9 H10 H10 H 0 1 N N N -20.333 31.688 -31.026 3.654 -2.089 -1.463 H10 EU9 45 EU9 H11 H11 H 0 1 N N N -21.519 30.339 -31.053 3.041 -0.658 -2.325 H11 EU9 46 EU9 H12 H12 H 0 1 N N N -22.367 29.869 -32.939 4.036 1.477 -2.016 H12 EU9 47 EU9 H13 H13 H 0 1 N N N -22.335 29.723 -35.412 5.921 2.805 -1.150 H13 EU9 48 EU9 H14 H14 H 0 1 N N N -20.261 30.321 -36.651 7.442 1.836 0.526 H14 EU9 49 EU9 H15 H15 H 0 1 N N N -18.208 30.918 -35.412 7.078 -0.460 1.338 H15 EU9 50 EU9 H16 H16 H 0 1 N N N -21.635 28.933 -29.314 0.498 -1.857 -1.887 H16 EU9 51 EU9 H17 H17 H 0 1 N N N -20.238 28.327 -28.361 1.231 -3.138 -0.893 H17 EU9 52 EU9 H18 H18 H 0 1 N N N -21.373 26.625 -29.779 -0.206 -2.350 1.047 H18 EU9 53 EU9 H19 H19 H 0 1 N N N -21.160 25.829 -32.725 -2.612 -1.297 1.393 H19 EU9 54 EU9 H20 H20 H 0 1 N N N -18.573 25.298 -31.782 -3.372 -2.594 -1.230 H20 EU9 55 EU9 H21 H21 H 0 1 N N N -19.797 23.908 -30.346 -3.816 -4.346 0.331 H21 EU9 56 EU9 H22 H22 H 0 1 N N N -18.460 27.227 -30.395 -1.273 -3.511 -1.533 H22 EU9 57 EU9 H23 H23 H 0 1 N N N -18.917 26.397 -28.260 -1.879 -5.194 0.053 H23 EU9 58 EU9 H24 H24 H 0 1 N N N -17.545 27.203 -32.396 -2.474 0.463 -1.974 H24 EU9 59 EU9 H25 H25 H 0 1 N N N -18.103 28.165 -38.504 -6.697 2.806 -1.797 H25 EU9 60 EU9 H26 H26 H 0 1 N N N -17.454 28.982 -37.247 -8.047 2.797 -0.797 H26 EU9 61 EU9 H27 H27 H 0 1 N N N -22.066 27.031 -37.086 -7.191 -0.287 2.451 H27 EU9 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EU9 N6 C6 SING N N 1 EU9 N1 C6 DOUB Y N 2 EU9 N1 C2 SING Y N 3 EU9 C6 C5 SING Y N 4 EU9 C2 N3 DOUB Y N 5 EU9 C61 C1 DOUB Y N 6 EU9 C61 C51 SING Y N 7 EU9 C5 C4 DOUB Y N 8 EU9 C5 N7 SING Y N 9 EU9 N3 C4 SING Y N 10 EU9 C1 C21 SING Y N 11 EU9 C51 C41 DOUB Y N 12 EU9 C4 N9 SING Y N 13 EU9 N7 C8 DOUB Y N 14 EU9 O9 N8 SING N N 15 EU9 C21 C3 DOUB Y N 16 EU9 C41 N8 SING N N 17 EU9 C41 C3 SING Y N 18 EU9 N9 C8 SING Y N 19 EU9 N9 C23 SING N N 20 EU9 N8 O10 DOUB N N 21 EU9 C3 C7 SING N N 22 EU9 C23 O24 SING N N 23 EU9 C23 C22 SING N N 24 EU9 O24 C20 SING N N 25 EU9 C22 O26 SING N N 26 EU9 C22 C27 SING N N 27 EU9 C7 S11 SING N N 28 EU9 C20 C27 SING N N 29 EU9 C20 C19 SING N N 30 EU9 C27 O25 SING N N 31 EU9 S11 C19 SING N N 32 EU9 S11 C12 SING N N 33 EU9 O17 C15 DOUB N N 34 EU9 C13 C12 SING N N 35 EU9 C13 C14 SING N N 36 EU9 C15 O16 SING N N 37 EU9 C15 C14 SING N N 38 EU9 C14 N18 SING N N 39 EU9 O16 H1 SING N N 40 EU9 C14 H2 SING N N 41 EU9 N18 H3 SING N N 42 EU9 N18 H4 SING N N 43 EU9 C13 H6 SING N N 44 EU9 C13 H7 SING N N 45 EU9 C12 H8 SING N N 46 EU9 C12 H9 SING N N 47 EU9 C7 H10 SING N N 48 EU9 C7 H11 SING N N 49 EU9 C21 H12 SING N N 50 EU9 C1 H13 SING N N 51 EU9 C61 H14 SING N N 52 EU9 C51 H15 SING N N 53 EU9 C19 H16 SING N N 54 EU9 C19 H17 SING N N 55 EU9 C20 H18 SING N N 56 EU9 C23 H19 SING N N 57 EU9 C22 H20 SING N N 58 EU9 O26 H21 SING N N 59 EU9 C27 H22 SING N N 60 EU9 O25 H23 SING N N 61 EU9 C8 H24 SING N N 62 EU9 N6 H25 SING N N 63 EU9 N6 H26 SING N N 64 EU9 C2 H27 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EU9 InChI InChI 1.03 "InChI=1S/C21H25N7O7S/c22-12(21(31)32)5-6-36(7-11-3-1-2-4-13(11)28(33)34)8-14-16(29)17(30)20(35-14)27-10-26-15-18(23)24-9-25-19(15)27/h1-4,9-10,12,14,16-17,20,29-30H,5-8,22H2,(H2-,23,24,25,31,32)/p+1/t12-,14-,16-,17-,20-,36-/m1/s1" EU9 InChIKey InChI 1.03 UTGYKEAAXXLVQJ-OUPAZNFWSA-O EU9 SMILES_CANONICAL CACTVS 3.385 "N[C@H](CC[S@@+](C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)Cc4ccccc4[N](=O)=O)C(O)=O" EU9 SMILES CACTVS 3.385 "N[CH](CC[S+](C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)Cc4ccccc4[N](=O)=O)C(O)=O" EU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C[S+](CC[C@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N(=O)=O" EU9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C[S+](CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N(=O)=O" # _pdbx_chem_comp_identifier.comp_id EU9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{R})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]-[(2-nitrophenyl)methyl]sulfanium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EU9 "Create component" 2020-01-24 PDBJ EU9 "Initial release" 2020-10-21 RCSB ##