data_EX5 # _chem_comp.id EX5 _chem_comp.name "Jerantinine B" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-01 _chem_comp.pdbx_modified_date 2019-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EX5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EX5 CAA C1 C 0 1 Y N N 17.547 66.600 45.164 -2.098 0.738 -0.063 CAA EX5 1 EX5 CAB C2 C 0 1 Y N N 17.494 65.705 46.289 -3.264 0.079 -0.450 CAB EX5 2 EX5 CAC C3 C 0 1 Y N N 17.071 64.352 46.077 -3.315 -1.306 -0.532 CAC EX5 3 EX5 CAD C4 C 0 1 Y N N 16.705 63.943 44.740 -2.210 -2.099 -0.244 CAD EX5 4 EX5 CAE C5 C 0 1 Y N N 16.772 64.856 43.689 -1.037 -1.446 0.134 CAE EX5 5 EX5 CAF C6 C 0 1 Y N N 17.185 66.163 43.895 -1.003 -0.045 0.228 CAF EX5 6 EX5 CAH C7 C 0 1 N N N 16.656 65.806 41.754 1.139 -0.992 0.532 CAH EX5 7 EX5 CAI C8 C 0 1 N N R 17.129 66.769 42.661 0.364 0.291 0.722 CAI EX5 8 EX5 CAJ C9 C 0 1 N N N 16.181 66.153 40.532 2.488 -1.064 0.450 CAJ EX5 9 EX5 CAK C10 C 0 1 N N N 15.734 67.497 40.250 3.194 0.280 0.324 CAK EX5 10 EX5 CAL C11 C 0 1 N N S 15.309 68.340 41.623 2.348 1.104 -0.639 CAL EX5 11 EX5 CAM C12 C 0 1 N N R 16.588 68.267 42.414 1.035 1.480 0.056 CAM EX5 12 EX5 CAN C13 C 0 1 N N R 14.909 69.833 41.451 3.084 2.379 -1.032 CAN EX5 13 EX5 CAO C14 C 0 1 N N S 15.923 70.966 41.623 2.734 3.703 -0.359 CAO EX5 14 EX5 CAP C15 C 0 1 N N N 17.349 70.593 42.114 1.614 3.737 0.672 CAP EX5 15 EX5 CAT C16 C 0 1 N N N 16.633 62.217 46.905 -4.481 -3.332 -0.973 CAT EX5 16 EX5 CAU C17 C 0 1 N N N 17.133 66.895 48.384 -5.304 0.927 0.205 CAU EX5 17 EX5 CAV C18 C 0 1 N N N 16.883 66.233 49.731 -6.612 1.613 -0.096 CAV EX5 18 EX5 CAY C19 C 0 1 N N N 18.761 68.629 42.836 0.425 2.193 2.221 CAY EX5 19 EX5 CAZ C20 C 0 1 N N N 18.678 67.066 42.470 0.274 0.642 2.228 CAZ EX5 20 EX5 CBA C21 C 0 1 N N N 14.104 67.697 42.323 2.052 0.278 -1.892 CBA EX5 21 EX5 CBB C22 C 0 1 N N N 13.048 67.269 41.303 3.367 -0.107 -2.572 CBB EX5 22 EX5 CBC C23 C 0 1 N N N 15.916 65.172 39.579 3.187 -2.290 0.480 CBC EX5 23 EX5 CBF C24 C 0 1 N N N 14.540 64.625 37.879 5.176 -3.577 0.431 CBF EX5 24 EX5 NAG N1 N 0 1 N N N 16.501 64.693 42.430 0.214 -1.982 0.415 NAG EX5 25 EX5 NAQ N2 N 0 1 N N N 17.662 69.149 41.972 1.438 2.383 1.173 NAQ EX5 26 EX5 OAR O1 O 0 1 N N N 17.043 63.550 47.155 -4.478 -1.904 -0.904 OAR EX5 27 EX5 OAS O2 O 0 1 N N N 17.863 66.128 47.545 -4.372 0.808 -0.754 OAS EX5 28 EX5 OAW O3 O 0 1 N N N 16.706 68.019 48.140 -5.094 0.482 1.313 OAW EX5 29 EX5 OAX O4 O 0 1 N N N 14.888 70.705 42.596 2.354 3.403 -1.706 OAX EX5 30 EX5 OBD O5 O 0 1 N N N 16.105 63.989 39.825 2.575 -3.337 0.583 OBD EX5 31 EX5 OBE O6 O 0 1 N N N 15.449 65.593 38.385 4.534 -2.301 0.395 OBE EX5 32 EX5 H1 H1 H 0 1 N N N 17.871 67.620 45.307 -2.054 1.815 0.001 H1 EX5 33 EX5 H2 H2 H 0 1 N N N 16.380 62.930 44.555 -2.258 -3.175 -0.310 H2 EX5 34 EX5 H4 H4 H 0 1 N N N 16.547 68.038 39.743 3.258 0.764 1.298 H4 EX5 35 EX5 H5 H5 H 0 1 N N N 14.859 67.444 39.586 4.191 0.143 -0.095 H5 EX5 36 EX5 H6 H6 H 0 1 N N N 16.318 68.619 43.421 0.355 1.974 -0.637 H6 EX5 37 EX5 H7 H7 H 0 1 N N N 14.142 70.012 40.683 4.120 2.243 -1.342 H7 EX5 38 EX5 H8 H8 H 0 1 N N N 15.832 71.837 40.958 3.541 4.416 -0.191 H8 EX5 39 EX5 H9 H9 H 0 1 N N N 18.081 71.168 41.528 1.883 4.405 1.489 H9 EX5 40 EX5 H10 H10 H 0 1 N N N 17.435 70.866 43.176 0.690 4.078 0.204 H10 EX5 41 EX5 H11 H11 H 0 1 N N N 16.644 61.647 47.846 -4.240 -3.743 0.007 H11 EX5 42 EX5 H12 H12 H 0 1 N N N 15.615 62.219 46.489 -5.468 -3.679 -1.280 H12 EX5 43 EX5 H13 H13 H 0 1 N N N 17.322 61.750 46.185 -3.738 -3.661 -1.699 H13 EX5 44 EX5 H14 H14 H 0 1 N N N 16.298 66.911 50.370 -6.618 1.943 -1.135 H14 EX5 45 EX5 H15 H15 H 0 1 N N N 16.325 65.297 49.581 -7.434 0.916 0.068 H15 EX5 46 EX5 H16 H16 H 0 1 N N N 17.846 66.012 50.215 -6.729 2.475 0.560 H16 EX5 47 EX5 H17 H17 H 0 1 N N N 19.735 69.062 42.564 -0.513 2.676 1.950 H17 EX5 48 EX5 H18 H18 H 0 1 N N N 18.564 68.811 43.903 0.785 2.555 3.184 H18 EX5 49 EX5 H19 H19 H 0 1 N N N 19.289 66.461 43.156 -0.692 0.349 2.637 H19 EX5 50 EX5 H20 H20 H 0 1 N N N 18.997 66.880 41.434 1.088 0.176 2.784 H20 EX5 51 EX5 H21 H21 H 0 1 N N N 13.660 68.425 43.018 1.509 -0.625 -1.613 H21 EX5 52 EX5 H22 H22 H 0 1 N N N 14.442 66.813 42.884 1.446 0.867 -2.581 H22 EX5 53 EX5 H23 H23 H 0 1 N N N 12.196 66.812 41.827 3.156 -0.695 -3.465 H23 EX5 54 EX5 H24 H24 H 0 1 N N N 12.703 68.149 40.741 3.910 0.796 -2.851 H24 EX5 55 EX5 H25 H25 H 0 1 N N N 13.486 66.538 40.607 3.973 -0.696 -1.883 H25 EX5 56 EX5 H26 H26 H 0 1 N N N 14.153 64.959 36.905 4.938 -4.077 1.370 H26 EX5 57 EX5 H27 H27 H 0 1 N N N 15.059 63.663 37.757 4.825 -4.184 -0.403 H27 EX5 58 EX5 H28 H28 H 0 1 N N N 13.704 64.504 38.584 6.255 -3.443 0.354 H28 EX5 59 EX5 H3 H3 H 0 1 N N N 16.210 63.826 42.026 0.398 -2.928 0.526 H3 EX5 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EX5 CBF OBE SING N N 1 EX5 OBE CBC SING N N 2 EX5 CBC OBD DOUB N N 3 EX5 CBC CAJ SING N N 4 EX5 CAK CAJ SING N N 5 EX5 CAK CAL SING N N 6 EX5 CAJ CAH DOUB N N 7 EX5 CBB CBA SING N N 8 EX5 CAN CAO SING N N 9 EX5 CAN CAL SING N N 10 EX5 CAN OAX SING N N 11 EX5 CAO CAP SING N N 12 EX5 CAO OAX SING N N 13 EX5 CAL CBA SING N N 14 EX5 CAL CAM SING N N 15 EX5 CAH NAG SING N N 16 EX5 CAH CAI SING N N 17 EX5 NAQ CAP SING N N 18 EX5 NAQ CAM SING N N 19 EX5 NAQ CAY SING N N 20 EX5 CAM CAI SING N N 21 EX5 NAG CAE SING N N 22 EX5 CAZ CAI SING N N 23 EX5 CAZ CAY SING N N 24 EX5 CAI CAF SING N N 25 EX5 CAE CAF DOUB Y N 26 EX5 CAE CAD SING Y N 27 EX5 CAF CAA SING Y N 28 EX5 CAD CAC DOUB Y N 29 EX5 CAA CAB DOUB Y N 30 EX5 CAC CAB SING Y N 31 EX5 CAC OAR SING N N 32 EX5 CAB OAS SING N N 33 EX5 CAT OAR SING N N 34 EX5 OAS CAU SING N N 35 EX5 OAW CAU DOUB N N 36 EX5 CAU CAV SING N N 37 EX5 CAA H1 SING N N 38 EX5 CAD H2 SING N N 39 EX5 CAK H4 SING N N 40 EX5 CAK H5 SING N N 41 EX5 CAM H6 SING N N 42 EX5 CAN H7 SING N N 43 EX5 CAO H8 SING N N 44 EX5 CAP H9 SING N N 45 EX5 CAP H10 SING N N 46 EX5 CAT H11 SING N N 47 EX5 CAT H12 SING N N 48 EX5 CAT H13 SING N N 49 EX5 CAV H14 SING N N 50 EX5 CAV H15 SING N N 51 EX5 CAV H16 SING N N 52 EX5 CAY H17 SING N N 53 EX5 CAY H18 SING N N 54 EX5 CAZ H19 SING N N 55 EX5 CAZ H20 SING N N 56 EX5 CBA H21 SING N N 57 EX5 CBA H22 SING N N 58 EX5 CBB H23 SING N N 59 EX5 CBB H24 SING N N 60 EX5 CBB H25 SING N N 61 EX5 CBF H26 SING N N 62 EX5 CBF H27 SING N N 63 EX5 CBF H28 SING N N 64 EX5 NAG H3 SING N N 65 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EX5 InChI InChI 1.03 "InChI=1S/C24H28N2O6/c1-5-23-10-13(21(28)30-4)19-24(6-7-26(22(23)24)11-18-20(23)32-18)14-8-17(31-12(2)27)16(29-3)9-15(14)25-19/h8-9,18,20,22,25H,5-7,10-11H2,1-4H3/t18-,20-,22-,23+,24-/m0/s1" EX5 InChIKey InChI 1.03 ZWUDUCJVIQMXIN-YOQJOLSQSA-N EX5 SMILES_CANONICAL CACTVS 3.385 "CC[C@@]12CC(=C3Nc4cc(OC)c(OC(C)=O)cc4[C@@]35CCN(C[C@@H]6O[C@H]16)[C@@H]25)C(=O)OC" EX5 SMILES CACTVS 3.385 "CC[C]12CC(=C3Nc4cc(OC)c(OC(C)=O)cc4[C]35CCN(C[CH]6O[CH]16)[CH]25)C(=O)OC" EX5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@]12CC(=C3[C@@]4([C@H]1N(CC4)C[C@H]5[C@@H]2O5)c6cc(c(cc6N3)OC)OC(=O)C)C(=O)OC" EX5 SMILES "OpenEye OEToolkits" 2.0.7 "CCC12CC(=C3C4(C1N(CC4)CC5C2O5)c6cc(c(cc6N3)OC)OC(=O)C)C(=O)OC" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EX5 "Create component" 2018-05-01 EBI EX5 "Other modification" 2019-04-29 EBI EX5 "Initial release" 2019-05-08 RCSB ##