data_EXX # _chem_comp.id EXX _chem_comp.name "4,5,6,7-tetrabromo-1-(2-deoxy-beta-D-erythro-pentofuranosyl)-1H-benzimidazole" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H10 Br4 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Tetrabromo-Deoxyribofuranosyl-Benzimidazole _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-05-30 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.835 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EXX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KWP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EXX BRE BRE BR 0 0 N N N 22.953 -32.045 15.425 2.804 2.935 0.137 BRAE EXX 1 EXX CAN CAN C 0 1 Y N N 22.859 -30.664 14.099 1.633 1.453 0.036 CAN EXX 2 EXX CAL CAL C 0 1 Y N N 22.995 -30.984 12.764 2.141 0.174 -0.012 CAL EXX 3 EXX BRC BRC BR 0 0 N N N 23.325 -32.817 12.140 4.012 -0.095 0.017 BRAC EXX 4 EXX CAM CAM C 0 1 Y N N 22.926 -29.968 11.871 1.288 -0.921 -0.080 CAM EXX 5 EXX BRD BRD BR 0 0 N N N 23.163 -30.430 10.003 2.006 -2.669 -0.143 BRAD EXX 6 EXX CAO CAO C 0 1 Y N N 22.719 -28.651 12.277 -0.080 -0.740 -0.101 CAO EXX 7 EXX BRF BRF BR 0 0 N N N 22.619 -27.302 10.900 -1.232 -2.237 -0.192 BRAF EXX 8 EXX CAQ CAQ C 0 1 Y N N 22.580 -28.333 13.656 -0.609 0.543 -0.054 CAQ EXX 9 EXX CAP CAP C 0 1 Y N N 22.662 -29.358 14.540 0.249 1.653 0.015 CAP EXX 10 EXX NAJ NAJ N 0 1 Y N N 22.521 -28.868 15.793 -0.537 2.760 0.052 NAJ EXX 11 EXX CAG CAG C 0 1 Y N N 22.339 -27.530 15.700 -1.789 2.409 0.006 CAG EXX 12 EXX NAU NAU N 0 1 Y N N 22.399 -27.177 14.390 -1.892 1.054 -0.058 NAU EXX 13 EXX CAT CAT C 0 1 N N R 22.217 -25.973 13.970 -3.134 0.279 -0.120 CAT EXX 14 EXX OAK OAK O 0 1 N N N 23.155 -25.000 14.503 -4.207 1.091 -0.647 OAK EXX 15 EXX CAI CAI C 0 1 N N N 20.755 -25.521 14.562 -3.596 -0.110 1.302 CAI EXX 16 EXX CAR CAR C 0 1 N N S 21.006 -24.157 14.893 -5.136 0.000 1.240 CAR EXX 17 EXX OAB OAB O 0 1 N N N 20.637 -23.288 13.798 -5.740 -1.268 1.505 OAB EXX 18 EXX CAS CAS C 0 1 N N R 22.360 -24.073 15.209 -5.423 0.444 -0.212 CAS EXX 19 EXX CAH CAH C 0 1 N N N 22.659 -24.054 16.798 -6.592 1.429 -0.248 CAH EXX 20 EXX OAA OAA O 0 1 N N N 22.038 -25.112 17.443 -6.868 1.793 -1.602 OAA EXX 21 EXX H1 H1 H 0 1 N N N 22.174 -26.857 16.528 -2.624 3.093 0.022 H1 EXX 22 EXX H2 H2 H 0 1 N N N 22.174 -25.901 12.873 -2.996 -0.611 -0.733 H2 EXX 23 EXX H3 H3 H 0 1 N N N 19.965 -25.614 13.802 -3.296 -1.132 1.535 H3 EXX 24 EXX H4 H4 H 0 1 N N N 20.480 -26.108 15.450 -3.193 0.585 2.039 H4 EXX 25 EXX H5 H5 H 0 1 N N N 20.407 -23.887 15.775 -5.495 0.750 1.945 H5 EXX 26 EXX H6 H6 H 0 1 N N N 20.811 -22.385 14.037 -5.543 -1.622 2.382 H6 EXX 27 EXX H7 H7 H 0 1 N N N 22.688 -23.079 14.870 -5.636 -0.423 -0.838 H7 EXX 28 EXX H8 H8 H 0 1 N N N 23.745 -24.125 16.959 -7.475 0.961 0.190 H8 EXX 29 EXX H9 H9 H 0 1 N N N 22.287 -23.109 17.221 -6.333 2.321 0.323 H9 EXX 30 EXX H10 H10 H 0 1 N N N 22.231 -25.074 18.372 -7.600 2.417 -1.700 H10 EXX 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EXX BRD CAM SING N N 1 EXX BRF CAO SING N N 2 EXX CAM CAO DOUB Y N 3 EXX CAM CAL SING Y N 4 EXX BRC CAL SING N N 5 EXX CAO CAQ SING Y N 6 EXX CAL CAN DOUB Y N 7 EXX CAQ NAU SING Y N 8 EXX CAQ CAP DOUB Y N 9 EXX OAB CAR SING N N 10 EXX CAT NAU SING N N 11 EXX CAT OAK SING N N 12 EXX CAT CAI SING N N 13 EXX CAN CAP SING Y N 14 EXX CAN BRE SING N N 15 EXX NAU CAG SING Y N 16 EXX OAK CAS SING N N 17 EXX CAP NAJ SING Y N 18 EXX CAI CAR SING N N 19 EXX CAR CAS SING N N 20 EXX CAS CAH SING N N 21 EXX CAG NAJ DOUB Y N 22 EXX CAH OAA SING N N 23 EXX CAG H1 SING N N 24 EXX CAT H2 SING N N 25 EXX CAI H3 SING N N 26 EXX CAI H4 SING N N 27 EXX CAR H5 SING N N 28 EXX OAB H6 SING N N 29 EXX CAS H7 SING N N 30 EXX CAH H8 SING N N 31 EXX CAH H9 SING N N 32 EXX OAA H10 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EXX SMILES ACDLabs 12.01 "Brc3c1c(ncn1C2OC(C(O)C2)CO)c(Br)c(Br)c3Br" EXX InChI InChI 1.03 "InChI=1S/C12H10Br4N2O3/c13-7-8(14)10(16)12-11(9(7)15)17-3-18(12)6-1-4(20)5(2-19)21-6/h3-6,19-20H,1-2H2/t4-,5+,6+/m0/s1" EXX InChIKey InChI 1.03 VQNVMWNZONLRRO-KVQBGUIXSA-N EXX SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3c(Br)c(Br)c(Br)c(Br)c23" EXX SMILES CACTVS 3.370 "OC[CH]1O[CH](C[CH]1O)n2cnc3c(Br)c(Br)c(Br)c(Br)c23" EXX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO)O)c(c(c(c2Br)Br)Br)Br" EXX SMILES "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)CO)O)c(c(c(c2Br)Br)Br)Br" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier EXX "SYSTEMATIC NAME" ACDLabs 12.01 "4,5,6,7-tetrabromo-1-(2-deoxy-beta-D-erythro-pentofuranosyl)-1H-benzimidazole" EXX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,5R)-2-(hydroxymethyl)-5-[4,5,6,7-tetrakis(bromanyl)benzimidazol-1-yl]oxolan-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EXX "Create component" 2013-05-30 RCSB EXX "Initial release" 2014-04-09 RCSB EXX "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id EXX _pdbx_chem_comp_synonyms.name Tetrabromo-Deoxyribofuranosyl-Benzimidazole _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##