data_EYT # _chem_comp.id EYT _chem_comp.name ;[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-bromanyl-5'-[3-oxidanylidene-3-(1,3-thiazol-2-ylamino)propoxy]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-6-yl]methyl dihydrogen phosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 B Br N8 O10 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2018-05-04 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 740.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code EYT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GGT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal EYT C2 C1 C 0 1 Y N N N N N 38.692 -46.211 6.238 2.787 0.575 3.385 C2 EYT 1 EYT C4 C2 C 0 1 Y N N N N N 39.117 -44.446 7.704 1.222 2.012 2.507 C4 EYT 2 EYT C5 C3 C 0 1 Y N N N N N 37.838 -44.718 8.378 1.666 3.014 3.386 C5 EYT 3 EYT C6 C4 C 0 1 Y N N N N N 37.066 -45.764 7.899 2.715 2.707 4.268 C6 EYT 4 EYT C8 C5 C 0 1 Y N N N N N 38.822 -43.030 9.339 0.057 3.858 2.202 C8 EYT 5 EYT C10 C6 C 0 1 N N S N N N 43.006 -37.629 6.685 -3.527 -2.728 0.551 C10 EYT 6 EYT N1 N1 N 0 1 Y N N N N N 37.517 -46.483 6.843 3.237 1.485 4.230 N1 EYT 7 EYT C11 C7 C 0 1 Y N N N N N 44.281 -38.402 6.731 -2.210 -3.278 0.057 C11 EYT 8 EYT C12 C8 C 0 1 Y N N N N N 44.051 -39.640 7.471 -1.316 -2.217 0.065 C12 EYT 9 EYT O1 O1 O 0 1 N N N N N N 42.133 -38.385 7.537 -3.231 -1.483 1.207 O1 EYT 10 EYT C13 C9 C 0 1 Y N N N N N 45.471 -38.089 6.195 -1.797 -4.526 -0.356 C13 EYT 11 EYT N3 N2 N 0 1 Y N N N N N 39.492 -45.214 6.647 1.807 0.818 2.542 N3 EYT 12 EYT C14 C10 C 0 1 Y N N N N N 46.499 -38.934 6.335 -0.488 -4.721 -0.765 C14 EYT 13 EYT C15 C11 C 0 1 Y N N N N N 46.292 -40.181 7.088 0.404 -3.666 -0.760 C15 EYT 14 EYT C16 C12 C 0 1 Y N N N N N 45.092 -40.481 7.630 -0.010 -2.408 -0.344 C16 EYT 15 EYT C17 C13 C 0 1 N N N N N N 42.424 -37.624 5.265 -4.164 -3.705 1.542 C17 EYT 16 EYT C20 C14 C 0 1 N N N N N N 46.167 -42.403 8.777 2.199 -1.641 -0.774 C20 EYT 17 EYT C21 C15 C 0 1 N N N N N N 45.789 -43.509 9.757 3.033 -0.360 -0.698 C21 EYT 18 EYT C22 C16 C 0 1 N N N N N N 44.886 -44.542 9.114 4.439 -0.648 -1.158 C22 EYT 19 EYT OP3 O2 O 0 1 N N N N N N 43.552 -42.866 14.336 -5.267 4.809 -3.217 OP3 EYT 20 EYT P P1 P 0 1 N N N N N N 42.980 -43.706 13.220 -4.003 5.411 -2.423 P EYT 21 EYT OP1 O3 O 0 1 N N N N N N 41.893 -44.568 13.784 -3.180 6.398 -3.393 OP1 EYT 22 EYT OP2 O4 O 0 1 N N N N N N 44.146 -44.523 12.800 -4.476 6.163 -1.240 OP2 EYT 23 EYT "O5'" O5 O 0 1 N N N N N N 42.553 -42.505 12.277 -3.047 4.206 -1.946 "O5'" EYT 24 EYT "C5'" C17 C 0 1 N N N N N N 41.733 -42.917 11.177 -3.453 3.220 -0.995 "C5'" EYT 25 EYT "C4'" C18 C 0 1 N N R N N N 42.224 -42.292 9.875 -2.309 2.228 -0.769 "C4'" EYT 26 EYT "C3'" C19 C 0 1 N N S N N N 41.487 -41.016 9.506 -2.776 1.096 0.162 "C3'" EYT 27 EYT "C2'" C20 C 0 1 N N R N N N 40.921 -41.291 8.133 -1.749 1.120 1.337 "C2'" EYT 28 EYT "C1'" C21 C 0 1 N N R N N N 40.963 -42.791 7.955 -0.570 1.912 0.723 "C1'" EYT 29 EYT N9 N3 N 0 1 Y N N N N N 39.657 -43.405 8.329 0.208 2.573 1.774 N9 EYT 30 EYT N6 N4 N 0 1 N N N N N N 35.880 -46.074 8.469 3.194 3.653 5.157 N6 EYT 31 EYT N7 N5 N 0 1 Y N N N N N 37.722 -43.811 9.371 0.913 4.115 3.148 N7 EYT 32 EYT "O4'" O6 O 0 1 N N N N N N 42.023 -43.232 8.798 -1.209 2.890 -0.123 "O4'" EYT 33 EYT "O3'" O7 O 0 1 N N N N N N 42.362 -39.917 9.310 -2.474 -0.175 -0.462 "O3'" EYT 34 EYT B B1 B -1 1 N N N N N N 42.662 -39.643 7.952 -2.113 -0.986 0.586 B EYT 35 EYT "O2'" O8 O 0 1 N N N N N N 41.847 -40.634 7.291 -1.357 -0.259 1.465 "O2'" EYT 36 EYT N18 N6 N 0 1 N N N N N N 42.139 -38.993 4.770 -5.497 -3.217 1.923 N18 EYT 37 EYT BR BR1 BR 0 0 N N N N N N 45.747 -36.448 5.249 -3.015 -5.972 -0.363 BR EYT 38 EYT O19 O9 O 0 1 N N N N N N 44.987 -41.727 8.348 0.866 -1.368 -0.338 O19 EYT 39 EYT O40 O10 O 0 1 N N N N N N 44.895 -44.736 7.904 4.744 -1.767 -1.511 O40 EYT 40 EYT N23 N7 N 0 1 N N N N N N 44.113 -45.207 9.971 5.357 0.339 -1.176 N23 EYT 41 EYT C41 C22 C 0 1 Y N N N N N 43.228 -46.132 9.606 6.654 0.073 -1.600 C41 EYT 42 EYT N45 N8 N 0 1 Y N N N N N 42.430 -46.722 10.467 7.610 0.947 -1.656 N45 EYT 43 EYT C44 C23 C 0 1 Y N N N N N 41.581 -47.817 10.025 8.783 0.521 -2.084 C44 EYT 44 EYT C43 C24 C 0 1 Y N N N N N 41.719 -47.891 8.508 8.821 -0.773 -2.405 C43 EYT 45 EYT S42 S1 S 0 1 Y N N N N N 42.955 -46.728 8.080 7.222 -1.454 -2.116 S42 EYT 46 EYT H1 H1 H 0 1 N N N N N N 38.999 -46.815 5.397 3.243 -0.404 3.384 H1 EYT 47 EYT H2 H2 H 0 1 N N N N N N 39.015 -42.216 10.022 -0.666 4.560 1.813 H2 EYT 48 EYT H3 H3 H 0 1 N N N N N N 43.150 -36.601 7.048 -4.200 -2.557 -0.290 H3 EYT 49 EYT H4 H4 H 0 1 N N N N N N 47.462 -38.705 5.904 -0.165 -5.699 -1.089 H4 EYT 50 EYT H5 H5 H 0 1 N N N N N N 47.115 -40.869 7.210 1.424 -3.820 -1.080 H5 EYT 51 EYT H6 H6 H 0 1 N N N N N N 43.147 -37.146 4.588 -4.256 -4.686 1.077 H6 EYT 52 EYT H7 H7 H 0 1 N N N N N N 41.488 -37.047 5.268 -3.538 -3.781 2.431 H7 EYT 53 EYT H8 H8 H 0 1 N N N N N N 46.676 -42.842 7.906 2.179 -2.001 -1.802 H8 EYT 54 EYT H9 H9 H 0 1 N N N N N N 46.840 -41.688 9.272 2.643 -2.402 -0.132 H9 EYT 55 EYT H10 H10 H 0 1 N N N N N N 46.707 -44.005 10.106 2.589 0.400 -1.340 H10 EYT 56 EYT H11 H11 H 0 1 N N N N N N 45.265 -43.062 10.615 3.053 -0.001 0.331 H11 EYT 57 EYT H12 H12 H 0 1 N N N N N N 44.469 -43.083 14.459 -5.031 4.302 -4.006 H12 EYT 58 EYT H13 H13 H 0 1 N N N N N N 42.166 -45.478 13.762 -3.695 7.148 -3.719 H13 EYT 59 EYT H14 H14 H 0 1 N N N N N N 40.696 -42.600 11.361 -3.703 3.706 -0.052 H14 EYT 60 EYT H15 H15 H 0 1 N N N N N N 41.771 -44.013 11.089 -4.326 2.688 -1.373 H15 EYT 61 EYT H16 H16 H 0 1 N N N N N N 43.296 -42.065 9.976 -1.986 1.813 -1.723 H16 EYT 62 EYT H17 H17 H 0 1 N N N N N N 40.688 -40.797 10.229 -3.812 1.200 0.484 H17 EYT 63 EYT H18 H18 H 0 1 N N N N N N 39.897 -40.902 8.034 -2.140 1.561 2.254 H18 EYT 64 EYT H19 H19 H 0 1 N N N N N N 41.188 -43.023 6.904 0.068 1.253 0.134 H19 EYT 65 EYT H20 H20 H 0 1 N N N N N N 35.473 -46.852 7.991 2.804 4.542 5.176 H20 EYT 66 EYT H21 H21 H 0 1 N N N N N N 36.024 -46.311 9.430 3.919 3.429 5.761 H21 EYT 67 EYT H22 H22 H 0 1 N N N N N N 41.763 -38.942 3.845 -5.938 -3.845 2.577 H22 EYT 68 EYT H23 H23 H 0 1 N N N N N N 42.985 -39.525 4.756 -5.446 -2.281 2.297 H23 EYT 69 EYT H25 H25 H 0 1 N N N N N N 44.203 -44.999 10.945 5.112 1.234 -0.893 H25 EYT 70 EYT H26 H26 H 0 1 N N N N N N 40.972 -48.454 10.649 9.644 1.169 -2.168 H26 EYT 71 EYT H27 H27 H 0 1 N N N N N N 41.167 -48.530 7.835 9.682 -1.311 -2.773 H27 EYT 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal EYT N18 C17 SING N N 1 EYT BR C13 SING N N 2 EYT C17 C10 SING N N 3 EYT C13 C14 DOUB Y N 4 EYT C13 C11 SING Y N 5 EYT C2 N3 DOUB Y N 6 EYT C2 N1 SING Y N 7 EYT C14 C15 SING Y N 8 EYT N3 C4 SING Y N 9 EYT C10 C11 SING N N 10 EYT C10 O1 SING N N 11 EYT C11 C12 DOUB Y N 12 EYT N1 C6 DOUB Y N 13 EYT C15 C16 DOUB Y N 14 EYT "O2'" B SING N N 15 EYT "O2'" "C2'" SING N N 16 EYT C12 C16 SING Y N 17 EYT C12 B SING N N 18 EYT O1 B SING N N 19 EYT C16 O19 SING N N 20 EYT C4 N9 SING Y N 21 EYT C4 C5 DOUB Y N 22 EYT C6 C5 SING Y N 23 EYT C6 N6 SING N N 24 EYT O40 C22 DOUB N N 25 EYT B "O3'" SING N N 26 EYT "C1'" "C2'" SING N N 27 EYT "C1'" N9 SING N N 28 EYT "C1'" "O4'" SING N N 29 EYT S42 C43 SING Y N 30 EYT S42 C41 SING Y N 31 EYT "C2'" "C3'" SING N N 32 EYT N9 C8 SING Y N 33 EYT O19 C20 SING N N 34 EYT C5 N7 SING Y N 35 EYT C43 C44 DOUB Y N 36 EYT C20 C21 SING N N 37 EYT "O4'" "C4'" SING N N 38 EYT C22 C21 SING N N 39 EYT C22 N23 SING N N 40 EYT "O3'" "C3'" SING N N 41 EYT C8 N7 DOUB Y N 42 EYT "C3'" "C4'" SING N N 43 EYT C41 N23 SING N N 44 EYT C41 N45 DOUB Y N 45 EYT "C4'" "C5'" SING N N 46 EYT C44 N45 SING Y N 47 EYT "C5'" "O5'" SING N N 48 EYT "O5'" P SING N N 49 EYT OP2 P DOUB N N 50 EYT P OP1 SING N N 51 EYT P OP3 SING N N 52 EYT C2 H1 SING N N 53 EYT C8 H2 SING N N 54 EYT C10 H3 SING N N 55 EYT C14 H4 SING N N 56 EYT C15 H5 SING N N 57 EYT C17 H6 SING N N 58 EYT C17 H7 SING N N 59 EYT C20 H8 SING N N 60 EYT C20 H9 SING N N 61 EYT C21 H10 SING N N 62 EYT C21 H11 SING N N 63 EYT OP3 H12 SING N N 64 EYT OP1 H13 SING N N 65 EYT "C5'" H14 SING N N 66 EYT "C5'" H15 SING N N 67 EYT "C4'" H16 SING N N 68 EYT "C3'" H17 SING N N 69 EYT "C2'" H18 SING N N 70 EYT "C1'" H19 SING N N 71 EYT N6 H20 SING N N 72 EYT N6 H21 SING N N 73 EYT N18 H22 SING N N 74 EYT N18 H23 SING N N 75 EYT N23 H25 SING N N 76 EYT C44 H26 SING N N 77 EYT C43 H27 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor EYT InChI InChI 1.03 "InChI=1S/C24H26BBrN8O10PS/c26-11-1-2-12(39-5-3-15(35)33-24-29-4-6-46-24)17-16(11)13(7-27)42-25(17)43-19-14(8-40-45(36,37)38)41-23(20(19)44-25)34-10-32-18-21(28)30-9-31-22(18)34/h1-2,4,6,9-10,13-14,19-20,23H,3,5,7-8,27H2,(H2,28,30,31)(H,29,33,35)(H2,36,37,38)/q-1/t13-,14-,19-,20-,23-,25+/m1/s1" EYT InChIKey InChI 1.03 WVJYJHILOSTTGL-NCOZZQORSA-N EYT SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1O[B-]2(O[C@@H]3[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]3O2)n4cnc5c(N)ncnc45)c6c(OCCC(=O)Nc7sccn7)ccc(Br)c16" EYT SMILES CACTVS 3.385 "NC[CH]1O[B-]2(O[CH]3[CH](CO[P](O)(O)=O)O[CH]([CH]3O2)n4cnc5c(N)ncnc45)c6c(OCCC(=O)Nc7sccn7)ccc(Br)c16" EYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[B-]12(c3c(ccc(c3[C@H](O1)CN)Br)OCCC(=O)Nc4nccs4)O[C@@H]5[C@H](O[C@H]([C@@H]5O2)n6cnc7c6ncnc7N)COP(=O)(O)O" EYT SMILES "OpenEye OEToolkits" 2.0.6 "[B-]12(c3c(ccc(c3C(O1)CN)Br)OCCC(=O)Nc4nccs4)OC5C(OC(C5O2)n6cnc7c6ncnc7N)COP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id EYT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier ;[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-bromanyl-5'-[3-oxidanylidene-3-(1,3-thiazol-2-ylamino)propoxy]spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-6-yl]methyl dihydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site EYT "Create component" 2018-05-04 EBI EYT "Initial release" 2024-06-12 RCSB #