data_F2A # _chem_comp.id F2A _chem_comp.name "2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O11 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-02-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F2A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3C2L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F2A PA PA P 0 1 N N S -3.842 -3.880 34.388 1.818 1.110 0.534 PA F2A 1 F2A O1A O1A O 0 1 N N N -5.063 -3.623 35.200 1.668 0.387 1.964 O1A F2A 2 F2A O2A O2A O 0 1 N N N -2.533 -3.360 34.853 2.405 2.455 0.720 O2A F2A 3 F2A C3A C3A C 0 1 N N N -3.673 -5.749 34.435 2.907 0.115 -0.538 C3A F2A 4 F2A "O5'" "O5'" O 0 1 N N N -4.067 -3.289 32.925 0.368 1.247 -0.153 "O5'" F2A 5 F2A PB PB P 0 1 N N S -4.768 -7.073 33.688 4.548 -0.041 0.240 PB F2A 6 F2A O1B O1B O 0 1 N N N -4.315 -7.232 32.281 4.410 -0.705 1.555 O1B F2A 7 F2A O2B O2B O 0 1 N N N -6.175 -6.676 33.970 5.187 1.423 0.442 O2B F2A 8 F2A O3B O3B O 0 1 N N N -4.465 -8.342 34.423 5.509 -0.919 -0.707 O3B F2A 9 F2A PG PG P 0 1 N N N -4.432 -8.357 35.915 7.039 -1.411 -0.600 PG F2A 10 F2A O1G O1G O 0 1 N N N -2.991 -8.444 36.260 7.870 -0.320 -0.044 O1G F2A 11 F2A O2G O2G O 0 1 N N N -5.375 -9.385 36.429 7.123 -2.696 0.366 O2G F2A 12 F2A O3G O3G O 0 1 N N N -4.946 -7.053 36.409 7.580 -1.804 -2.065 O3G F2A 13 F2A "C5'" "C5'" C 0 1 N N N -5.206 -3.642 32.146 -0.677 2.055 0.391 "C5'" F2A 14 F2A "C4'" "C4'" C 0 1 N N R -4.960 -3.338 30.687 -1.913 1.961 -0.505 "C4'" F2A 15 F2A "O4'" "O4'" O 0 1 N N N -4.223 -2.097 30.548 -2.493 0.640 -0.434 "O4'" F2A 16 F2A "C1'" "C1'" C 0 1 N N R -3.402 -2.161 29.388 -3.862 0.760 -0.855 "C1'" F2A 17 F2A N9 N9 N 0 1 Y N N -2.006 -1.932 29.776 -4.697 -0.187 -0.110 N9 F2A 18 F2A C4 C4 C 0 1 Y N N -1.002 -1.476 28.952 -5.906 -0.695 -0.513 C4 F2A 19 F2A N3 N3 N 0 1 Y N N -1.101 -1.135 27.658 -6.677 -0.543 -1.584 N3 F2A 20 F2A C2 C2 C 0 1 Y N N 0.081 -0.754 27.181 -7.821 -1.188 -1.684 C2 F2A 21 F2A N1 N1 N 0 1 Y N N 1.262 -0.680 27.803 -8.258 -2.005 -0.744 N1 F2A 22 F2A C6 C6 C 0 1 Y N N 1.329 -1.022 29.106 -7.555 -2.219 0.363 C6 F2A 23 F2A N6 N6 N 0 1 N N N 2.507 -0.936 29.730 -8.022 -3.078 1.343 N6 F2A 24 F2A C5 C5 C 0 1 Y N N 0.145 -1.448 29.731 -6.327 -1.554 0.516 C5 F2A 25 F2A N7 N7 N 0 1 Y N N -0.127 -1.868 31.025 -5.371 -1.527 1.475 N7 F2A 26 F2A C8 C8 C 0 1 Y N N -1.413 -2.138 31.004 -4.411 -0.729 1.108 C8 F2A 27 F2A "C2'" "C2'" C 0 1 N N N -3.622 -3.539 28.760 -4.310 2.203 -0.553 "C2'" F2A 28 F2A "C3'" "C3'" C 0 1 N N S -4.087 -4.343 29.964 -3.042 2.884 0.022 "C3'" F2A 29 F2A "O3'" "O3'" O 0 1 N N N -4.868 -5.460 29.571 -2.901 4.212 -0.487 "O3'" F2A 30 F2A HO1A HO1A H 0 0 N N N -4.827 -3.568 36.119 1.288 -0.501 1.918 HO1A F2A 31 F2A H3A H3A H 0 1 N N N -2.701 -5.925 33.951 2.474 -0.876 -0.675 H3A F2A 32 F2A H3AA H3AA H 0 0 N N N -3.929 -5.907 35.493 3.008 0.604 -1.507 H3AA F2A 33 F2A HO2B HO2B H 0 0 N N N -6.299 -6.591 34.908 5.306 1.918 -0.380 HO2B F2A 34 F2A HO2G HO2G H 0 0 N N N -5.576 -10.005 35.738 6.601 -3.451 0.063 HO2G F2A 35 F2A HO3G HO3G H 0 0 N N N -5.056 -7.092 37.352 8.497 -2.110 -2.076 HO3G F2A 36 F2A "H5'" "H5'" H 0 1 N N N -5.404 -4.718 32.262 -0.926 1.702 1.392 "H5'" F2A 37 F2A "H5'A" "H5'A" H 0 0 N N N -6.071 -3.057 32.492 -0.345 3.092 0.443 "H5'A" F2A 38 F2A "H4'" "H4'" H 0 1 N N N -5.972 -3.328 30.256 -1.660 2.214 -1.535 "H4'" F2A 39 F2A "H1'" "H1'" H 0 1 N N N -3.657 -1.388 28.648 -3.941 0.561 -1.924 "H1'" F2A 40 F2A H2 H2 H 0 1 N N N 0.087 -0.462 26.141 -8.424 -1.042 -2.569 H2 F2A 41 F2A HN6 HN6 H 0 1 N N N 3.243 -0.915 29.053 -8.872 -3.531 1.226 HN6 F2A 42 F2A HN6A HN6A H 0 0 N N N 2.534 -0.100 30.278 -7.500 -3.226 2.147 HN6A F2A 43 F2A H8 H8 H 0 1 N N N -1.956 -2.489 31.869 -3.520 -0.524 1.684 H8 F2A 44 F2A "H2'" "H2'" H 0 1 N N N -4.374 -3.517 27.957 -4.627 2.704 -1.468 "H2'" F2A 45 F2A "H2'A" "H2'A" H 0 0 N N N -2.732 -3.952 28.263 -5.114 2.207 0.184 "H2'A" F2A 46 F2A "H3'" "H3'" H 0 1 N N N -3.258 -4.751 30.561 -3.061 2.886 1.112 "H3'" F2A 47 F2A "HO3'" "HO3'" H 0 0 N N N -5.043 -5.413 28.638 -3.632 4.801 -0.256 "HO3'" F2A 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F2A "O5'" PA SING N N 1 F2A PA C3A SING N N 2 F2A PA O2A DOUB N N 3 F2A PA O1A SING N N 4 F2A O1A HO1A SING N N 5 F2A PB C3A SING N N 6 F2A C3A H3A SING N N 7 F2A C3A H3AA SING N N 8 F2A "C5'" "O5'" SING N N 9 F2A O1B PB DOUB N N 10 F2A PB O2B SING N N 11 F2A PB O3B SING N N 12 F2A O2B HO2B SING N N 13 F2A O3B PG SING N N 14 F2A PG O1G DOUB N N 15 F2A PG O3G SING N N 16 F2A PG O2G SING N N 17 F2A O2G HO2G SING N N 18 F2A O3G HO3G SING N N 19 F2A "C4'" "C5'" SING N N 20 F2A "C5'" "H5'" SING N N 21 F2A "C5'" "H5'A" SING N N 22 F2A "C3'" "C4'" SING N N 23 F2A "O4'" "C4'" SING N N 24 F2A "C4'" "H4'" SING N N 25 F2A "C1'" "O4'" SING N N 26 F2A "C2'" "C1'" SING N N 27 F2A "C1'" N9 SING N N 28 F2A "C1'" "H1'" SING N N 29 F2A C4 N9 SING Y N 30 F2A N9 C8 SING Y N 31 F2A N3 C4 DOUB Y N 32 F2A C4 C5 SING Y N 33 F2A C2 N3 SING Y N 34 F2A C2 N1 DOUB Y N 35 F2A C2 H2 SING N N 36 F2A N1 C6 SING Y N 37 F2A C6 N6 SING N N 38 F2A C6 C5 DOUB Y N 39 F2A N6 HN6 SING N N 40 F2A N6 HN6A SING N N 41 F2A C5 N7 SING Y N 42 F2A C8 N7 DOUB Y N 43 F2A C8 H8 SING N N 44 F2A "C2'" "C3'" SING N N 45 F2A "C2'" "H2'" SING N N 46 F2A "C2'" "H2'A" SING N N 47 F2A "O3'" "C3'" SING N N 48 F2A "C3'" "H3'" SING N N 49 F2A "O3'" "HO3'" SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F2A SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O" F2A SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)C[P@@](O)(=O)O[P](O)(O)=O)O3" F2A SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)O3" F2A SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(C[P@](=O)(O)OP(=O)(O)O)O)O)N" F2A SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)N" F2A InChI InChI 1.03 "InChI=1S/C11H18N5O11P3/c12-10-9-11(14-3-13-10)16(4-15-9)8-1-6(17)7(26-8)2-25-28(18,19)5-29(20,21)27-30(22,23)24/h3-4,6-8,17H,1-2,5H2,(H,18,19)(H,20,21)(H2,12,13,14)(H2,22,23,24)/t6-,7+,8+/m0/s1" F2A InChIKey InChI 1.03 XETARULVTCYJAN-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F2A "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine" F2A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-[(hydroxy-phosphonooxy-phosphoryl)methyl]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F2A "Create component" 2008-02-04 RCSB F2A "Modify aromatic_flag" 2011-06-04 RCSB F2A "Modify descriptor" 2011-06-04 RCSB #