data_F2S
#
_chem_comp.id F2S
_chem_comp.name "11-[(2R)-butan-2-yl]-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H44 N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-26
_chem_comp.pdbx_modified_date 2018-08-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 612.765
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F2S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CJ1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F2S C11 C1 C 0 1 Y N N 0.314 10.134 -4.171 -2.355 -2.142 -0.578 C11 F2S 1
F2S C12 C2 C 0 1 Y N N 0.460 9.611 -5.462 -1.858 -3.023 0.389 C12 F2S 2
F2S C13 C3 C 0 1 Y N N 1.718 9.236 -5.923 -0.590 -2.835 0.902 C13 F2S 3
F2S C14 C4 C 0 1 Y N N 2.898 9.409 -5.050 0.193 -1.769 0.456 C14 F2S 4
F2S C15 C5 C 0 1 Y N N 2.710 9.959 -3.791 -0.302 -0.894 -0.504 C15 F2S 5
F2S C16 C6 C 0 1 Y N N 1.424 10.308 -3.344 -1.564 -1.080 -1.024 C16 F2S 6
F2S O1 O1 O 0 1 N N N 10.252 6.160 -2.162 7.002 1.986 -2.669 O1 F2S 7
F2S C27 C7 C 0 1 N N N 9.243 6.829 -2.391 6.220 1.628 -1.810 C27 F2S 8
F2S N1 N1 N 0 1 N N N 8.478 6.505 -3.410 5.356 0.678 -2.137 N1 F2S 9
F2S C28 C8 C 0 1 N N N 8.672 5.262 -4.139 5.453 0.142 -3.497 C28 F2S 10
F2S C19 C9 C 0 1 Y N N 7.386 7.237 -3.891 4.364 0.137 -1.320 C19 F2S 11
F2S C18 C10 C 0 1 Y N N 7.192 7.270 -5.271 3.116 -0.160 -1.851 C18 F2S 12
F2S N4 N2 N 0 1 Y N N 6.118 7.905 -5.758 2.197 -0.711 -1.070 N4 F2S 13
F2S C26 C11 C 0 1 Y N N 8.958 8.011 -1.518 6.321 2.284 -0.501 C26 F2S 14
F2S C25 C12 C 0 1 Y N N 10.074 8.641 -0.982 6.594 3.654 -0.430 C25 F2S 15
F2S C24 C13 C 0 1 Y N N 9.930 9.749 -0.162 6.722 4.269 0.796 C24 F2S 16
F2S C23 C14 C 0 1 Y N N 8.673 10.247 0.153 6.587 3.538 1.965 C23 F2S 17
F2S C22 C15 C 0 1 Y N N 7.532 9.652 -0.350 6.305 2.187 1.912 C22 F2S 18
F2S C21 C16 C 0 1 Y N N 7.607 8.516 -1.170 6.154 1.556 0.685 C21 F2S 19
F2S N2 N3 N 0 1 N N N 6.410 7.974 -1.680 5.785 0.215 0.636 N2 F2S 20
F2S C29 C17 C 0 1 N N R 5.181 7.727 -0.916 6.648 -0.816 1.218 C29 F2S 21
F2S C20 C18 C 0 1 Y N N 6.348 7.867 -3.058 4.590 -0.128 0.031 C20 F2S 22
F2S N3 N4 N 0 1 Y N N 5.303 8.477 -3.640 3.628 -0.701 0.747 N3 F2S 23
F2S C17 C19 C 0 1 Y N N 5.176 8.476 -4.971 2.455 -0.984 0.199 C17 F2S 24
F2S N5 N5 N 0 1 N N N 4.119 9.082 -5.572 1.473 -1.580 0.976 N5 F2S 25
F2S C2 C20 C 0 1 N N N -3.422 10.079 -3.714 -4.122 0.058 -0.856 C2 F2S 26
F2S C1 C21 C 0 1 N N N -4.302 8.892 -3.343 -5.223 0.625 0.047 C1 F2S 27
F2S C3 C22 C 0 1 N N N -1.790 8.196 -3.503 -5.832 -1.444 -1.957 C3 F2S 28
F2S C4 C23 C 0 1 N N N -2.632 7.503 -4.571 -6.913 -0.861 -1.042 C4 F2S 29
F2S C C24 C 0 1 N N N -4.111 7.666 -4.233 -6.558 0.588 -0.699 C F2S 30
F2S C31 C25 C 0 1 N N N 4.313 6.739 1.201 5.574 -0.596 3.463 C31 F2S 31
F2S C32 C26 C 0 1 N N N 5.566 7.087 0.414 5.884 -1.560 2.316 C32 F2S 32
F2S O2 O2 O 0 1 N N N 1.928 8.706 -7.171 -0.104 -3.689 1.842 O2 F2S 33
F2S C5 C27 C 0 1 N N N 0.869 8.254 -8.026 -0.960 -4.758 2.253 C5 F2S 34
F2S C6 C28 C 0 1 N N N -1.053 10.521 -3.688 -3.709 -2.339 -1.130 C6 F2S 35
F2S O3 O3 O 0 1 N N N -1.240 11.661 -3.326 -4.089 -3.456 -1.424 O3 F2S 36
F2S N6 N6 N 0 1 N N N -2.037 9.632 -3.655 -4.524 -1.281 -1.308 N6 F2S 37
F2S N7 N7 N 0 1 N N N -4.605 6.472 -3.521 -7.610 1.161 0.151 N7 F2S 38
F2S C30 C29 C 0 1 N N N -4.385 5.248 -4.320 -8.925 1.062 -0.498 C30 F2S 39
F2S C33 C30 C 0 1 N N N -4.927 4.010 -3.602 -10.001 1.596 0.451 C33 F2S 40
F2S N8 N8 N 0 1 N N N -6.354 4.171 -3.258 -9.693 2.989 0.801 N8 F2S 41
F2S C35 C31 C 0 1 N N N -6.565 5.406 -2.486 -8.379 3.089 1.450 C35 F2S 42
F2S C36 C32 C 0 1 N N N -6.052 6.616 -3.266 -7.303 2.555 0.502 C36 F2S 43
F2S C37 C33 C 0 1 N N N -6.795 3.045 -2.420 -10.745 3.563 1.651 C37 F2S 44
F2S C7 C34 C 0 1 N N N 4.375 9.010 -0.738 7.066 -1.805 0.128 C7 F2S 45
F2S H1 H1 H 0 1 N N N -0.404 9.499 -6.100 -2.464 -3.847 0.733 H1 F2S 46
F2S H2 H2 H 0 1 N N N 3.561 10.121 -3.147 0.306 -0.070 -0.847 H2 F2S 47
F2S H3 H3 H 0 1 N N N 1.294 10.714 -2.352 -1.945 -0.402 -1.773 H3 F2S 48
F2S H4 H4 H 0 1 N N N 9.538 4.725 -3.725 6.261 0.644 -4.029 H4 F2S 49
F2S H5 H5 H 0 1 N N N 7.773 4.636 -4.042 5.658 -0.928 -3.452 H5 F2S 50
F2S H6 H6 H 0 1 N N N 8.852 5.484 -5.201 4.513 0.310 -4.022 H6 F2S 51
F2S H7 H7 H 0 1 N N N 7.896 6.792 -5.936 2.897 0.055 -2.886 H7 F2S 52
F2S H8 H8 H 0 1 N N N 11.061 8.265 -1.206 6.703 4.230 -1.337 H8 F2S 53
F2S H9 H9 H 0 1 N N N 10.809 10.232 0.238 6.931 5.328 0.846 H9 F2S 54
F2S H10 H10 H 0 1 N N N 8.586 11.109 0.798 6.703 4.027 2.921 H10 F2S 55
F2S H11 H11 H 0 1 N N N 6.565 10.069 -0.108 6.202 1.622 2.826 H11 F2S 56
F2S H12 H12 H 0 1 N N N 4.559 7.009 -1.471 7.535 -0.349 1.645 H12 F2S 57
F2S H13 H13 H 0 1 N N N 4.253 9.323 -6.533 1.676 -1.865 1.880 H13 F2S 58
F2S H14 H14 H 0 1 N N N -3.582 10.902 -3.002 -3.986 0.710 -1.719 H14 F2S 59
F2S H15 H15 H 0 1 N N N -3.663 10.422 -4.731 -3.189 -0.010 -0.296 H15 F2S 60
F2S H16 H16 H 0 1 N N N -5.353 9.208 -3.412 -5.295 0.023 0.953 H16 F2S 61
F2S H17 H17 H 0 1 N N N -4.073 8.604 -2.306 -4.982 1.654 0.312 H17 F2S 62
F2S H18 H18 H 0 1 N N N -2.095 7.861 -2.501 -6.027 -2.503 -2.124 H18 F2S 63
F2S H19 H19 H 0 1 N N N -0.723 7.974 -3.655 -5.837 -0.917 -2.911 H19 F2S 64
F2S H20 H20 H 0 1 N N N -2.378 6.433 -4.602 -7.876 -0.888 -1.553 H20 F2S 65
F2S H21 H21 H 0 1 N N N -2.427 7.957 -5.552 -6.970 -1.448 -0.126 H21 F2S 66
F2S H22 H22 H 0 1 N N N -4.680 7.806 -5.164 -6.477 1.169 -1.618 H22 F2S 67
F2S H23 H23 H 0 1 N N N 4.597 6.278 2.159 4.965 0.228 3.092 H23 F2S 68
F2S H24 H24 H 0 1 N N N 3.734 7.655 1.392 5.030 -1.126 4.245 H24 F2S 69
F2S H25 H25 H 0 1 N N N 3.701 6.033 0.622 6.506 -0.205 3.871 H25 F2S 70
F2S H26 H26 H 0 1 N N N 6.144 6.171 0.224 4.952 -1.952 1.908 H26 F2S 71
F2S H27 H27 H 0 1 N N N 6.178 7.793 0.995 6.493 -2.384 2.687 H27 F2S 72
F2S H28 H28 H 0 1 N N N 1.294 7.874 -8.967 -1.877 -4.347 2.676 H28 F2S 73
F2S H29 H29 H 0 1 N N N 0.311 7.450 -7.524 -1.204 -5.379 1.391 H29 F2S 74
F2S H30 H30 H 0 1 N N N 0.190 9.092 -8.242 -0.452 -5.362 3.004 H30 F2S 75
F2S H32 H32 H 0 1 N N N -3.306 5.120 -4.490 -8.923 1.651 -1.415 H32 F2S 76
F2S H33 H33 H 0 1 N N N -4.898 5.355 -5.287 -9.135 0.019 -0.736 H33 F2S 77
F2S H34 H34 H 0 1 N N N -4.813 3.136 -4.260 -10.973 1.550 -0.040 H34 F2S 78
F2S H35 H35 H 0 1 N N N -4.351 3.851 -2.678 -10.021 0.989 1.356 H35 F2S 79
F2S H37 H37 H 0 1 N N N -6.023 5.334 -1.531 -8.169 4.131 1.689 H37 F2S 80
F2S H38 H38 H 0 1 N N N -7.640 5.531 -2.289 -8.380 2.499 2.367 H38 F2S 81
F2S H39 H39 H 0 1 N N N -6.230 7.530 -2.680 -6.330 2.601 0.992 H39 F2S 82
F2S H40 H40 H 0 1 N N N -6.586 6.685 -4.225 -7.283 3.161 -0.404 H40 F2S 83
F2S H41 H41 H 0 1 N N N -7.858 3.170 -2.167 -10.827 2.981 2.570 H41 F2S 84
F2S H42 H42 H 0 1 N N N -6.658 2.103 -2.970 -10.493 4.594 1.896 H42 F2S 85
F2S H43 H43 H 0 1 N N N -6.199 3.020 -1.496 -11.696 3.537 1.120 H43 F2S 86
F2S H44 H44 H 0 1 N N N 3.462 8.794 -0.163 7.610 -1.276 -0.654 H44 F2S 87
F2S H45 H45 H 0 1 N N N 4.981 9.752 -0.197 7.708 -2.573 0.561 H45 F2S 88
F2S H46 H46 H 0 1 N N N 4.100 9.410 -1.725 6.179 -2.272 -0.299 H46 F2S 89
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F2S C5 O2 SING N N 1
F2S O2 C13 SING N N 2
F2S C13 C12 DOUB Y N 3
F2S C13 C14 SING Y N 4
F2S N4 C18 DOUB Y N 5
F2S N4 C17 SING Y N 6
F2S N5 C14 SING N N 7
F2S N5 C17 SING N N 8
F2S C12 C11 SING Y N 9
F2S C18 C19 SING Y N 10
F2S C14 C15 DOUB Y N 11
F2S C17 N3 DOUB Y N 12
F2S C4 C SING N N 13
F2S C4 C3 SING N N 14
F2S C30 C33 SING N N 15
F2S C30 N7 SING N N 16
F2S C N7 SING N N 17
F2S C C1 SING N N 18
F2S C11 C6 SING N N 19
F2S C11 C16 DOUB Y N 20
F2S C28 N1 SING N N 21
F2S C19 N1 SING N N 22
F2S C19 C20 DOUB Y N 23
F2S C15 C16 SING Y N 24
F2S C2 N6 SING N N 25
F2S C2 C1 SING N N 26
F2S C6 N6 SING N N 27
F2S C6 O3 DOUB N N 28
F2S N6 C3 SING N N 29
F2S N3 C20 SING Y N 30
F2S C33 N8 SING N N 31
F2S N7 C36 SING N N 32
F2S N1 C27 SING N N 33
F2S C36 C35 SING N N 34
F2S N8 C35 SING N N 35
F2S N8 C37 SING N N 36
F2S C20 N2 SING N N 37
F2S C27 O1 DOUB N N 38
F2S C27 C26 SING N N 39
F2S N2 C21 SING N N 40
F2S N2 C29 SING N N 41
F2S C26 C21 DOUB Y N 42
F2S C26 C25 SING Y N 43
F2S C21 C22 SING Y N 44
F2S C25 C24 DOUB Y N 45
F2S C29 C7 SING N N 46
F2S C29 C32 SING N N 47
F2S C22 C23 DOUB Y N 48
F2S C24 C23 SING Y N 49
F2S C32 C31 SING N N 50
F2S C12 H1 SING N N 51
F2S C15 H2 SING N N 52
F2S C16 H3 SING N N 53
F2S C28 H4 SING N N 54
F2S C28 H5 SING N N 55
F2S C28 H6 SING N N 56
F2S C18 H7 SING N N 57
F2S C25 H8 SING N N 58
F2S C24 H9 SING N N 59
F2S C23 H10 SING N N 60
F2S C22 H11 SING N N 61
F2S C29 H12 SING N N 62
F2S N5 H13 SING N N 63
F2S C2 H14 SING N N 64
F2S C2 H15 SING N N 65
F2S C1 H16 SING N N 66
F2S C1 H17 SING N N 67
F2S C3 H18 SING N N 68
F2S C3 H19 SING N N 69
F2S C4 H20 SING N N 70
F2S C4 H21 SING N N 71
F2S C H22 SING N N 72
F2S C31 H23 SING N N 73
F2S C31 H24 SING N N 74
F2S C31 H25 SING N N 75
F2S C32 H26 SING N N 76
F2S C32 H27 SING N N 77
F2S C5 H28 SING N N 78
F2S C5 H29 SING N N 79
F2S C5 H30 SING N N 80
F2S C30 H32 SING N N 81
F2S C30 H33 SING N N 82
F2S C33 H34 SING N N 83
F2S C33 H35 SING N N 84
F2S C35 H37 SING N N 85
F2S C35 H38 SING N N 86
F2S C36 H39 SING N N 87
F2S C36 H40 SING N N 88
F2S C37 H41 SING N N 89
F2S C37 H42 SING N N 90
F2S C37 H43 SING N N 91
F2S C7 H44 SING N N 92
F2S C7 H45 SING N N 93
F2S C7 H46 SING N N 94
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F2S SMILES ACDLabs 12.01 "c3(C(N1CCC(CC1)N2CCN(CC2)C)=O)ccc(c(c3)OC)Nc6ncc5N(C(=O)c4c(cccc4)N(C(C)CC)c5n6)C"
F2S InChI InChI 1.03
"InChI=1S/C34H44N8O3/c1-6-23(2)42-28-10-8-7-9-26(28)33(44)39(4)29-22-35-34(37-31(29)42)36-27-12-11-24(21-30(27)45-5)32(43)41-15-13-25(14-16-41)40-19-17-38(3)18-20-40/h7-12,21-23,25H,6,13-20H2,1-5H3,(H,35,36,37)/t23-/m1/s1"
F2S InChIKey InChI 1.03 ACWOMSOYIIVIRV-HSZRJFAPSA-N
F2S SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](C)N1c2ccccc2C(=O)N(C)c3cnc(Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(C)CC6)nc13"
F2S SMILES CACTVS 3.385 "CC[CH](C)N1c2ccccc2C(=O)N(C)c3cnc(Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(C)CC6)nc13"
F2S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC[C@@H](C)N1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(CC6)C)C"
F2S SMILES "OpenEye OEToolkits" 2.0.6 "CCC(C)N1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4ccc(cc4OC)C(=O)N5CCC(CC5)N6CCN(CC6)C)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
F2S "SYSTEMATIC NAME" ACDLabs 12.01 "11-[(2R)-butan-2-yl]-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
F2S "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "11-[(2~{R})-butan-2-yl]-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F2S "Create component" 2018-02-26 RCSB
F2S "Initial release" 2018-08-29 RCSB
#