data_F3J
#
_chem_comp.id F3J
_chem_comp.name "11-cyclobutyl-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H42 N8 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-02-26
_chem_comp.pdbx_modified_date 2018-08-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 610.749
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F3J
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CIY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F3J C1 C1 C 0 1 N N N -2.757 7.709 -4.720 -6.859 0.953 0.876 C1 F3J 1
F3J C2 C2 C 0 1 N N N -1.750 8.326 -3.755 -5.880 1.662 1.816 C2 F3J 2
F3J C3 C3 C 0 1 N N N -3.374 10.206 -3.728 -4.064 0.056 1.096 C3 F3J 3
F3J C4 C4 C 0 1 N N N -4.202 9.023 -3.223 -5.064 -0.634 0.164 C4 F3J 4
F3J C5 C5 C 0 1 N N N 1.063 9.019 -8.047 -1.026 4.644 -2.511 C5 F3J 5
F3J C6 C6 C 0 1 N N N -0.964 10.627 -3.519 -3.682 2.474 1.106 C6 F3J 6
F3J C7 C7 C 0 1 N N N 5.430 7.555 0.670 7.113 1.698 -0.366 C7 F3J 7
F3J C11 C8 C 0 1 Y N N 0.419 10.249 -3.992 -2.343 2.238 0.534 C11 F3J 8
F3J C12 C9 C 0 1 Y N N 0.608 9.857 -5.329 -1.872 3.046 -0.505 C12 F3J 9
F3J C13 C10 C 0 1 Y N N 1.872 9.484 -5.784 -0.618 2.823 -1.037 C13 F3J 10
F3J C14 C11 C 0 1 Y N N 3.027 9.509 -4.861 0.177 1.790 -0.536 C14 F3J 11
F3J C15 C12 C 0 1 Y N N 2.813 9.926 -3.540 -0.291 0.987 0.497 C15 F3J 12
F3J C16 C13 C 0 1 Y N N 1.519 10.283 -3.117 -1.540 1.210 1.035 C16 F3J 13
F3J C17 C14 C 0 1 Y N N 5.279 8.503 -4.847 2.421 0.945 -0.310 C17 F3J 14
F3J C18 C15 C 0 1 Y N N 7.237 7.197 -5.153 3.083 0.094 1.729 C18 F3J 15
F3J C19 C16 C 0 1 Y N N 7.471 7.166 -3.776 4.312 -0.246 1.180 C19 F3J 16
F3J C20 C17 C 0 1 Y N N 6.466 7.859 -2.931 4.532 0.028 -0.171 C20 F3J 17
F3J C21 C18 C 0 1 Y N N 7.751 8.492 -1.048 6.050 -1.696 -0.848 C21 F3J 18
F3J C22 C19 C 0 1 Y N N 7.692 9.608 -0.211 6.170 -2.327 -2.078 C22 F3J 19
F3J C25 C20 C 0 1 Y N N 10.238 8.597 -0.890 6.457 -3.806 0.256 C25 F3J 20
F3J O1 O1 O 0 1 N N N 10.382 6.184 -2.083 6.927 -2.151 2.495 O1 F3J 21
F3J C27 C21 C 0 1 N N N 9.364 6.813 -2.316 6.143 -1.776 1.645 C27 F3J 22
F3J N1 N1 N 0 1 N N N 8.570 6.434 -3.310 5.299 -0.812 1.985 N1 F3J 23
F3J C28 C22 C 0 1 N N N 8.789 5.155 -3.995 5.417 -0.287 3.348 C28 F3J 24
F3J N4 N2 N 0 1 Y N N 6.178 7.872 -5.636 2.171 0.675 0.962 N4 F3J 25
F3J C26 C23 C 0 1 Y N N 9.106 7.992 -1.429 6.214 -2.431 0.334 C26 F3J 26
F3J C24 C24 C 0 1 Y N N 10.113 9.687 -0.036 6.557 -4.421 -0.973 C24 F3J 27
F3J C23 C25 C 0 1 Y N N 8.856 10.181 0.300 6.422 -3.683 -2.138 C23 F3J 28
F3J N2 N3 N 0 1 N N N 6.522 8.023 -1.547 5.715 -0.346 -0.792 N2 F3J 29
F3J C29 C26 C 0 1 N N N 5.287 8.092 -0.753 6.598 0.664 -1.380 C29 F3J 30
F3J N3 N4 N 0 1 Y N N 5.443 8.509 -3.516 3.580 0.633 -0.873 N3 F3J 31
F3J N5 N5 N 0 1 N N N 4.232 9.157 -5.408 1.444 1.564 -1.074 N5 F3J 32
F3J C C27 C 0 1 N N N -4.186 7.862 -4.212 -6.470 -0.522 0.757 C F3J 33
F3J C31 C28 C 0 1 N N N 4.251 7.016 -1.074 5.845 1.821 -2.059 C31 F3J 34
F3J C32 C29 C 0 1 N N N 4.210 6.670 0.414 5.861 2.529 -0.692 C32 F3J 35
F3J O2 O2 O 0 1 N N N 2.110 9.086 -7.080 -0.159 3.607 -2.048 O2 F3J 36
F3J O3 O3 O 0 1 N N N -1.150 11.715 -2.995 -4.038 3.605 1.374 O3 F3J 37
F3J N6 N6 N 0 1 N N N -1.977 9.772 -3.675 -4.511 1.436 1.331 N6 F3J 38
F3J N7 N7 N 0 1 N N N -4.675 6.619 -3.569 -7.427 -1.212 -0.118 N7 F3J 39
F3J C30 C30 C 0 1 N N N -6.115 6.735 -3.268 -7.085 -2.634 -0.256 C30 F3J 40
F3J C33 C31 C 0 1 N N N -6.604 5.482 -2.538 -8.056 -3.298 -1.235 C33 F3J 41
F3J N8 N8 N 0 1 N N N -6.373 4.287 -3.374 -9.431 -3.135 -0.743 N8 F3J 42
F3J C35 C32 C 0 1 N N N -4.944 4.177 -3.722 -9.774 -1.713 -0.606 C35 F3J 43
F3J C36 C33 C 0 1 N N N -4.482 5.445 -4.442 -8.803 -1.049 0.374 C36 F3J 44
F3J C37 C34 C 0 1 N N N -6.808 3.087 -2.639 -10.388 -3.825 -1.619 C37 F3J 45
F3J H1 H1 H 0 1 N N N -2.532 6.639 -4.835 -7.870 1.032 1.276 H1 F3J 46
F3J H2 H2 H 0 1 N N N -2.669 8.209 -5.696 -6.821 1.420 -0.109 H2 F3J 47
F3J H3 H3 H 0 1 N N N -1.875 7.879 -2.758 -6.091 2.731 1.827 H3 F3J 48
F3J H4 H4 H 0 1 N N N -0.729 8.134 -4.117 -5.982 1.257 2.823 H4 F3J 49
F3J H5 H5 H 0 1 N N N -3.527 11.083 -3.082 -4.018 -0.480 2.044 H5 F3J 50
F3J H6 H6 H 0 1 N N N -3.657 10.458 -4.761 -3.078 0.066 0.632 H6 F3J 51
F3J H7 H7 H 0 1 N N N -5.241 9.352 -3.076 -5.042 -0.153 -0.814 H7 F3J 52
F3J H8 H8 H 0 1 N N N -3.787 8.680 -2.264 -4.797 -1.686 0.057 H8 F3J 53
F3J H9 H9 H 0 1 N N N 1.473 8.680 -9.010 -0.539 5.193 -3.316 H9 F3J 54
F3J H10 H10 H 0 1 N N N 0.294 8.310 -7.706 -1.953 4.205 -2.879 H10 F3J 55
F3J H11 H11 H 0 1 N N N 0.614 10.016 -8.171 -1.248 5.325 -1.689 H11 F3J 56
F3J H12 H12 H 0 1 N N N 6.362 7.002 0.856 7.138 1.329 0.660 H12 F3J 57
F3J H13 H13 H 0 1 N N N 5.288 8.310 1.458 8.045 2.177 -0.666 H13 F3J 58
F3J H14 H14 H 0 1 N N N -0.232 9.845 -6.008 -2.489 3.845 -0.891 H14 F3J 59
F3J H15 H15 H 0 1 N N N 3.640 9.973 -2.847 0.327 0.189 0.882 H15 F3J 60
F3J H16 H16 H 0 1 N N N 1.367 10.591 -2.093 -1.900 0.587 1.840 H16 F3J 61
F3J H17 H17 H 0 1 N N N 7.904 6.681 -5.828 2.873 -0.111 2.768 H17 F3J 62
F3J H18 H18 H 0 1 N N N 6.732 10.033 0.044 6.067 -1.757 -2.990 H18 F3J 63
F3J H19 H19 H 0 1 N N N 11.219 8.218 -1.137 6.567 -4.386 1.160 H19 F3J 64
F3J H20 H20 H 0 1 N N N 9.668 4.654 -3.564 4.774 -0.860 4.015 H20 F3J 65
F3J H21 H21 H 0 1 N N N 7.903 4.515 -3.868 6.452 -0.369 3.681 H21 F3J 66
F3J H22 H22 H 0 1 N N N 8.959 5.337 -5.066 5.113 0.760 3.361 H22 F3J 67
F3J H23 H23 H 0 1 N N N 10.998 10.154 0.370 6.742 -5.483 -1.028 H23 F3J 68
F3J H24 H24 H 0 1 N N N 8.781 11.025 0.970 6.514 -4.172 -3.097 H24 F3J 69
F3J H25 H25 H 0 1 N N N 4.840 9.097 -0.761 7.384 0.230 -1.999 H25 F3J 70
F3J H26 H26 H 0 1 N N N 4.359 9.422 -6.364 1.641 1.841 -1.983 H26 F3J 71
F3J H27 H27 H 0 1 N N N -4.838 8.113 -5.062 -6.485 -0.982 1.745 H27 F3J 72
F3J H28 H28 H 0 1 N N N 3.304 7.403 -1.478 6.430 2.334 -2.822 H28 F3J 73
F3J H29 H29 H 0 1 N N N 4.621 6.206 -1.720 4.846 1.550 -2.400 H29 F3J 74
F3J H30 H30 H 0 1 N N N 3.297 7.008 0.926 5.002 2.288 -0.065 H30 F3J 75
F3J H31 H31 H 0 1 N N N 4.378 5.604 0.630 6.051 3.600 -0.758 H31 F3J 76
F3J H33 H33 H 0 1 N N N -6.283 7.616 -2.631 -6.067 -2.728 -0.633 H33 F3J 77
F3J H34 H34 H 0 1 N N N -6.675 6.850 -4.208 -7.159 -3.122 0.716 H34 F3J 78
F3J H35 H35 H 0 1 N N N -7.680 5.578 -2.330 -7.962 -2.828 -2.215 H35 F3J 79
F3J H36 H36 H 0 1 N N N -6.055 5.375 -1.591 -7.821 -4.359 -1.317 H36 F3J 80
F3J H38 H38 H 0 1 N N N -4.795 3.309 -4.381 -9.700 -1.225 -1.578 H38 F3J 81
F3J H39 H39 H 0 1 N N N -4.354 4.045 -2.803 -10.792 -1.619 -0.228 H39 F3J 82
F3J H40 H40 H 0 1 N N N -3.416 5.352 -4.697 -8.896 -1.519 1.353 H40 F3J 83
F3J H41 H41 H 0 1 N N N -5.069 5.575 -5.363 -9.037 0.012 0.455 H41 F3J 84
F3J H42 H42 H 0 1 N N N -7.874 3.179 -2.384 -10.151 -4.889 -1.650 H42 F3J 85
F3J H43 H43 H 0 1 N N N -6.657 2.197 -3.268 -11.398 -3.689 -1.232 H43 F3J 86
F3J H44 H44 H 0 1 N N N -6.218 2.989 -1.716 -10.326 -3.409 -2.624 H44 F3J 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F3J C5 O2 SING N N 1
F3J O2 C13 SING N N 2
F3J C13 C12 DOUB Y N 3
F3J C13 C14 SING Y N 4
F3J N4 C18 DOUB Y N 5
F3J N4 C17 SING Y N 6
F3J N5 C14 SING N N 7
F3J N5 C17 SING N N 8
F3J C12 C11 SING Y N 9
F3J C18 C19 SING Y N 10
F3J C14 C15 DOUB Y N 11
F3J C17 N3 DOUB Y N 12
F3J C1 C SING N N 13
F3J C1 C2 SING N N 14
F3J C36 C35 SING N N 15
F3J C36 N7 SING N N 16
F3J C N7 SING N N 17
F3J C C4 SING N N 18
F3J C28 N1 SING N N 19
F3J C11 C6 SING N N 20
F3J C11 C16 DOUB Y N 21
F3J C19 N1 SING N N 22
F3J C19 C20 DOUB Y N 23
F3J C2 N6 SING N N 24
F3J C3 N6 SING N N 25
F3J C3 C4 SING N N 26
F3J C35 N8 SING N N 27
F3J N6 C6 SING N N 28
F3J N7 C30 SING N N 29
F3J C15 C16 SING Y N 30
F3J C6 O3 DOUB N N 31
F3J N3 C20 SING Y N 32
F3J N8 C37 SING N N 33
F3J N8 C33 SING N N 34
F3J N1 C27 SING N N 35
F3J C30 C33 SING N N 36
F3J C20 N2 SING N N 37
F3J C27 O1 DOUB N N 38
F3J C27 C26 SING N N 39
F3J N2 C21 SING N N 40
F3J N2 C29 SING N N 41
F3J C26 C21 DOUB Y N 42
F3J C26 C25 SING Y N 43
F3J C31 C29 SING N N 44
F3J C31 C32 SING N N 45
F3J C21 C22 SING Y N 46
F3J C25 C24 DOUB Y N 47
F3J C29 C7 SING N N 48
F3J C22 C23 DOUB Y N 49
F3J C24 C23 SING Y N 50
F3J C32 C7 SING N N 51
F3J C1 H1 SING N N 52
F3J C1 H2 SING N N 53
F3J C2 H3 SING N N 54
F3J C2 H4 SING N N 55
F3J C3 H5 SING N N 56
F3J C3 H6 SING N N 57
F3J C4 H7 SING N N 58
F3J C4 H8 SING N N 59
F3J C5 H9 SING N N 60
F3J C5 H10 SING N N 61
F3J C5 H11 SING N N 62
F3J C7 H12 SING N N 63
F3J C7 H13 SING N N 64
F3J C12 H14 SING N N 65
F3J C15 H15 SING N N 66
F3J C16 H16 SING N N 67
F3J C18 H17 SING N N 68
F3J C22 H18 SING N N 69
F3J C25 H19 SING N N 70
F3J C28 H20 SING N N 71
F3J C28 H21 SING N N 72
F3J C28 H22 SING N N 73
F3J C24 H23 SING N N 74
F3J C23 H24 SING N N 75
F3J C29 H25 SING N N 76
F3J N5 H26 SING N N 77
F3J C H27 SING N N 78
F3J C31 H28 SING N N 79
F3J C31 H29 SING N N 80
F3J C32 H30 SING N N 81
F3J C32 H31 SING N N 82
F3J C30 H33 SING N N 83
F3J C30 H34 SING N N 84
F3J C33 H35 SING N N 85
F3J C33 H36 SING N N 86
F3J C35 H38 SING N N 87
F3J C35 H39 SING N N 88
F3J C36 H40 SING N N 89
F3J C36 H41 SING N N 90
F3J C37 H42 SING N N 91
F3J C37 H43 SING N N 92
F3J C37 H44 SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F3J SMILES ACDLabs 12.01 "C1C(CCN(C1)C(=O)c2ccc(c(c2)OC)Nc3nc5c(cn3)N(C(=O)c4c(cccc4)N5C6CCC6)C)N7CCN(C)CC7"
F3J InChI InChI 1.03
"InChI=1S/C34H42N8O3/c1-38-17-19-40(20-18-38)24-13-15-41(16-14-24)32(43)23-11-12-27(30(21-23)45-3)36-34-35-22-29-31(37-34)42(25-7-6-8-25)28-10-5-4-9-26(28)33(44)39(29)2/h4-5,9-12,21-22,24-25H,6-8,13-20H2,1-3H3,(H,35,36,37)"
F3J InChIKey InChI 1.03 BPXUPQRJNWPFQU-UHFFFAOYSA-N
F3J SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7"
F3J SMILES CACTVS 3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7"
F3J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCC7"
F3J SMILES "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCC7"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
F3J "SYSTEMATIC NAME" ACDLabs 12.01 "11-cyclobutyl-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
F3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "11-cyclobutyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F3J "Create component" 2018-02-26 RCSB
F3J "Initial release" 2018-08-29 RCSB
#