data_F3M # _chem_comp.id F3M _chem_comp.name "methyl 4-amino-2,4,5-trideoxy-5,5,5-trifluoro-L-threo-pentonate" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H10 F3 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-09 _chem_comp.pdbx_modified_date 2012-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 201.144 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F3M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XE5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F3M N N N 0 1 N N N 55.905 14.481 9.812 -1.303 1.864 -0.458 N F3M 1 F3M C1 C1 C 0 1 N N N 52.772 11.876 9.331 2.545 0.023 0.153 C1 F3M 2 F3M F1 F1 F 0 1 N N N 54.693 16.614 11.081 -2.451 -0.634 -1.130 F1 F3M 3 F3M O1 O1 O 0 1 N N N 51.674 12.517 9.354 3.741 0.614 0.301 O1 F3M 4 F3M C2 C2 C 0 1 N N N 53.910 12.263 10.276 1.281 0.822 0.340 C2 F3M 5 F3M F2 F2 F 0 1 N N N 54.610 15.552 12.956 -3.597 0.502 0.488 F2 F3M 6 F3M O2 O2 O 0 1 N N N 52.997 10.912 8.545 2.481 -1.150 -0.131 O2 F3M 7 F3M C3 C3 C 0 1 N N S 53.836 13.697 10.842 0.068 -0.083 0.116 C3 F3M 8 F3M F3 F3 F 0 1 N N N 56.503 16.013 12.035 -2.340 -1.323 1.046 F3 F3M 9 F3M O3 O3 O 0 1 N N N 53.076 14.549 9.990 0.042 -0.516 -1.245 O3 F3M 10 F3M C4 C4 C 0 1 N N R 55.238 14.294 11.082 -1.213 0.695 0.427 C4 F3M 11 F3M C5 C5 C 0 1 N N N 55.252 15.652 11.807 -2.426 -0.209 0.203 C5 F3M 12 F3M CA CA C 0 1 N N N 50.662 11.775 9.261 4.915 -0.217 0.106 CA F3M 13 F3M HN HN H 0 1 N N N 56.814 14.868 9.966 -0.547 2.509 -0.283 HN F3M 14 F3M HNA HNA H 0 1 N N N 55.993 13.599 9.349 -1.323 1.584 -1.427 HNA F3M 15 F3M H2 H2 H 0 1 N N N 53.886 11.568 11.128 1.252 1.224 1.353 H2 F3M 16 F3M H2A H2A H 0 1 N N N 54.852 12.175 9.715 1.260 1.642 -0.377 H2A F3M 17 F3M H3 H3 H 0 1 N N N 53.327 13.630 11.815 0.135 -0.950 0.772 H3 F3M 18 F3M HO3 HO3 H 0 1 N N N 53.046 15.423 10.361 -0.017 0.205 -1.887 HO3 F3M 19 F3M H4 H4 H 0 1 N N N 55.747 13.570 11.735 -1.193 1.026 1.466 H4 F3M 20 F3M HA HA H 0 1 N N N 49.751 12.391 9.287 4.903 -1.038 0.823 HA F3M 21 F3M HAA HAA H 0 1 N N N 50.701 11.219 8.313 4.911 -0.620 -0.907 HAA F3M 22 F3M HAB HAB H 0 1 N N N 50.649 11.066 10.102 5.813 0.382 0.255 HAB F3M 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F3M N C4 SING N N 1 F3M C1 O1 SING N N 2 F3M C1 C2 SING N N 3 F3M C1 O2 DOUB N N 4 F3M F1 C5 SING N N 5 F3M O1 CA SING N N 6 F3M C2 C3 SING N N 7 F3M F2 C5 SING N N 8 F3M C3 O3 SING N N 9 F3M C3 C4 SING N N 10 F3M F3 C5 SING N N 11 F3M C4 C5 SING N N 12 F3M N HN SING N N 13 F3M N HNA SING N N 14 F3M C2 H2 SING N N 15 F3M C2 H2A SING N N 16 F3M C3 H3 SING N N 17 F3M O3 HO3 SING N N 18 F3M C4 H4 SING N N 19 F3M CA HA SING N N 20 F3M CA HAA SING N N 21 F3M CA HAB SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F3M SMILES ACDLabs 11.02 "O=C(OC)CC(O)C(N)C(F)(F)F" F3M SMILES_CANONICAL CACTVS 3.352 "COC(=O)C[C@H](O)[C@@H](N)C(F)(F)F" F3M SMILES CACTVS 3.352 "COC(=O)C[CH](O)[CH](N)C(F)(F)F" F3M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "COC(=O)C[C@@H]([C@H](C(F)(F)F)N)O" F3M SMILES "OpenEye OEToolkits" 1.7.0 "COC(=O)CC(C(C(F)(F)F)N)O" F3M InChI InChI 1.03 "InChI=1S/C6H10F3NO3/c1-13-4(12)2-3(11)5(10)6(7,8)9/h3,5,11H,2,10H2,1H3/t3-,5+/m0/s1" F3M InChIKey InChI 1.03 ZVARBPCHAKEWAX-WVZVXSGGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F3M "SYSTEMATIC NAME" ACDLabs 11.02 "methyl 4-amino-2,4,5-trideoxy-5,5,5-trifluoro-L-threo-pentonate" F3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "methyl (3S,4R)-4-azanyl-5,5,5-trifluoro-3-hydroxy-pentanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F3M "Create component" 2009-07-09 PDBJ F3M "Modify descriptor" 2011-06-04 RCSB #