data_F4H # _chem_comp.id F4H _chem_comp.name "1,5-anhydro-2,3-dideoxy-3-fluoro-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-mannitol" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 F N2 O8 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-06-14 _chem_comp.pdbx_modified_date 2012-08-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.226 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F4H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SD8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F4H P P P 0 1 N N N 10.588 5.143 3.172 4.434 0.529 0.114 P F4H 1 F4H N1 N1 N 0 1 N N N 5.570 6.729 5.263 -2.407 -0.259 0.517 N1 F4H 2 F4H C2 C2 C 0 1 N N N 4.669 6.859 6.335 -3.728 -0.032 0.638 C2 F4H 3 F4H O2 O2 O 0 1 N N N 3.674 7.777 6.268 -4.446 -0.902 1.091 O2 F4H 4 F4H N3 N3 N 0 1 N N N 4.761 6.065 7.414 -4.266 1.144 0.263 N3 F4H 5 F4H C4 C4 C 0 1 N N N 5.720 5.124 7.471 -3.483 2.119 -0.241 C4 F4H 6 F4H O4 O4 O 0 1 N N N 5.806 4.372 8.601 -3.968 3.183 -0.580 O4 F4H 7 F4H C5 C5 C 0 1 N N N 6.654 5.010 6.444 -2.091 1.894 -0.373 C5 F4H 8 F4H C6 C6 C 0 1 N N N 6.566 5.839 5.329 -1.579 0.705 0.010 C6 F4H 9 F4H "C1'" "C1'" C 0 1 N N N 5.643 7.092 2.770 -0.689 -1.309 1.908 "C1'" F4H 10 F4H "C2'" "C2'" C 0 1 N N R 5.424 7.676 4.146 -1.850 -1.546 0.939 "C2'" F4H 11 F4H "C3'" "C3'" C 0 1 N N R 6.369 8.845 4.351 -1.335 -2.307 -0.286 "C3'" F4H 12 F4H "F3'" "F3'" F 0 1 N N N 6.204 9.375 5.625 -2.374 -2.465 -1.210 "F3'" F4H 13 F4H "C4'" "C4'" C 0 1 N N R 7.819 8.453 4.033 -0.196 -1.508 -0.928 "C4'" F4H 14 F4H "O4'" "O4'" O 0 1 N N N 8.663 9.608 4.092 0.341 -2.242 -2.029 "O4'" F4H 15 F4H "C5'" "C5'" C 0 1 N N R 7.920 7.843 2.631 0.901 -1.272 0.114 "C5'" F4H 16 F4H "O5'" "O5'" O 0 1 N N N 7.014 6.748 2.566 0.348 -0.588 1.240 "O5'" F4H 17 F4H C5M C5M C 0 1 N N N 7.740 3.986 6.515 -1.194 2.967 -0.934 C5M F4H 18 F4H "C6'" "C6'" C 0 1 N N N 9.314 7.279 2.365 2.015 -0.423 -0.502 "C6'" F4H 19 F4H "O6'" "O6'" O 0 1 N N N 9.607 6.353 3.406 3.091 -0.300 0.430 "O6'" F4H 20 F4H HN3 HN3 H 0 1 N N N 4.119 6.173 8.173 -5.220 1.290 0.356 HN3 F4H 21 F4H H6 H6 H 0 1 N N N 7.290 5.765 4.531 -0.519 0.515 -0.083 H6 F4H 22 F4H "H1'" "H1'" H 0 1 N N N 5.029 6.185 2.666 -1.042 -0.730 2.763 "H1'" F4H 23 F4H "H1'A" "H1'A" H 0 0 N N N 5.347 7.836 2.016 -0.302 -2.267 2.253 "H1'A" F4H 24 F4H "H2'" "H2'" H 0 1 N N N 4.370 7.991 4.166 -2.624 -2.133 1.434 "H2'" F4H 25 F4H "H3'" "H3'" H 0 1 N N N 6.117 9.644 3.638 -0.967 -3.286 0.020 "H3'" F4H 26 F4H "H4'" "H4'" H 0 1 N N N 8.142 7.711 4.778 -0.577 -0.549 -1.280 "H4'" F4H 27 F4H "HO4'" "HO4'" H 0 0 N Y N 9.558 9.357 3.894 -0.301 -2.432 -2.727 "HO4'" F4H 28 F4H "H5'" "H5'" H 0 1 N N N 7.697 8.629 1.894 1.309 -2.230 0.435 "H5'" F4H 29 F4H H5M H5M H 0 1 N N N 8.369 4.055 5.616 -1.790 3.845 -1.184 H5M F4H 30 F4H H5MA H5MA H 0 0 N N N 8.356 4.167 7.408 -0.442 3.236 -0.193 H5MA F4H 31 F4H H5MB H5MB H 0 0 N N N 7.294 2.982 6.574 -0.701 2.595 -1.833 H5MB F4H 32 F4H "H6'" "H6'" H 0 1 N N N 9.337 6.772 1.389 2.375 -0.901 -1.412 "H6'" F4H 33 F4H "H6'A" "H6'A" H 0 0 N N N 10.056 8.091 2.360 1.627 0.567 -0.742 "H6'A" F4H 34 F4H O1P O1P O 0 1 N N N 11.071 4.548 4.613 5.476 0.345 1.328 O1P F4H 35 F4H O2P O2P O 0 1 N N N 9.827 3.986 2.339 5.042 0.026 -1.138 O2P F4H 36 F4H O3P O3P O 0 1 N Y N 11.960 5.681 2.285 4.075 2.090 -0.053 O3P F4H 37 F4H H15 H15 H 0 1 N N N 10.811 3.637 4.683 6.310 0.819 1.205 H15 F4H 38 F4H H16 H16 H 0 1 N Y N 12.018 5.199 1.468 3.672 2.487 0.731 H16 F4H 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F4H P "O6'" SING N N 1 F4H N1 C2 SING N N 2 F4H N1 C6 SING N N 3 F4H N1 "C2'" SING N N 4 F4H C2 O2 DOUB N N 5 F4H C2 N3 SING N N 6 F4H N3 C4 SING N N 7 F4H N3 HN3 SING N N 8 F4H C4 O4 DOUB N N 9 F4H C4 C5 SING N N 10 F4H C5 C6 DOUB N N 11 F4H C5 C5M SING N N 12 F4H C6 H6 SING N N 13 F4H "C1'" "C2'" SING N N 14 F4H "C1'" "O5'" SING N N 15 F4H "C1'" "H1'" SING N N 16 F4H "C1'" "H1'A" SING N N 17 F4H "C2'" "C3'" SING N N 18 F4H "C2'" "H2'" SING N N 19 F4H "C3'" "F3'" SING N N 20 F4H "C3'" "C4'" SING N N 21 F4H "C3'" "H3'" SING N N 22 F4H "C4'" "O4'" SING N N 23 F4H "C4'" "C5'" SING N N 24 F4H "C4'" "H4'" SING N N 25 F4H "O4'" "HO4'" SING N N 26 F4H "C5'" "O5'" SING N N 27 F4H "C5'" "C6'" SING N N 28 F4H "C5'" "H5'" SING N N 29 F4H C5M H5M SING N N 30 F4H C5M H5MA SING N N 31 F4H C5M H5MB SING N N 32 F4H "C6'" "O6'" SING N N 33 F4H "C6'" "H6'" SING N N 34 F4H "C6'" "H6'A" SING N N 35 F4H P O1P SING N N 36 F4H P O2P DOUB N N 37 F4H P O3P SING N N 38 F4H O1P H15 SING N N 39 F4H O3P H16 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F4H SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OCC(N1C(=O)NC(=O)C(=C1)C)C(F)C2O" F4H InChI InChI 1.03 "InChI=1S/C11H16FN2O8P/c1-5-2-14(11(17)13-10(5)16)6-3-21-7(9(15)8(6)12)4-22-23(18,19)20/h2,6-9,15H,3-4H2,1H3,(H,13,16,17)(H2,18,19,20)/t6-,7-,8-,9-/m1/s1" F4H InChIKey InChI 1.03 RHZOVKWYBYFNDA-FNCVBFRFSA-N F4H SMILES_CANONICAL CACTVS 3.370 "CC1=CN([C@@H]2CO[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F)C(=O)NC1=O" F4H SMILES CACTVS 3.370 "CC1=CN([CH]2CO[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)C(=O)NC1=O" F4H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC1=CN(C(=O)NC1=O)[C@@H]2CO[C@@H]([C@H]([C@@H]2F)O)COP(=O)(O)O" F4H SMILES "OpenEye OEToolkits" 1.7.2 "CC1=CN(C(=O)NC1=O)C2COC(C(C2F)O)COP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F4H "SYSTEMATIC NAME" ACDLabs 12.01 "1,5-anhydro-2,3-dideoxy-3-fluoro-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-mannitol" F4H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3R,4R,5R)-4-fluoranyl-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F4H "Create component" 2011-06-14 RCSB F4H "Initial release" 2012-08-24 RCSB #