data_F58 # _chem_comp.id F58 _chem_comp.name "N-[(cyclohexylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H24 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N-[(cyclohexylcarbonyl)carbamoyl]-beta-D-glucosylamine; N-[(cyclohexylcarbonyl)carbamoyl]-D-glucosylamine; N-[(cyclohexylcarbonyl)carbamoyl]-glucosylamine ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-11-22 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 332.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F58 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZCP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 F58 "N-[(cyclohexylcarbonyl)carbamoyl]-beta-D-glucosylamine" PDB ? 2 F58 "N-[(cyclohexylcarbonyl)carbamoyl]-D-glucosylamine" PDB ? 3 F58 "N-[(cyclohexylcarbonyl)carbamoyl]-glucosylamine" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F58 C1 C1 C 0 1 N N R 33.449 22.889 27.938 1.767 0.308 -0.092 C1 F58 1 F58 N1 N1 N 0 1 N N N 34.375 23.589 28.858 0.426 0.458 0.478 N1 F58 2 F58 C2 C2 C 0 1 N N R 33.820 23.126 26.462 2.583 1.575 0.182 C2 F58 3 F58 N2 N2 N 0 1 N N N 34.845 24.834 30.783 -1.871 0.055 0.374 N2 F58 4 F58 O2 O2 O 0 1 N N N 33.965 24.537 26.193 1.966 2.689 -0.467 O2 F58 5 F58 C3 C3 C 0 1 N N S 32.741 22.502 25.546 4.002 1.386 -0.363 C3 F58 6 F58 O3 O3 O 0 1 N N N 33.163 22.554 24.167 4.791 2.535 -0.048 O3 F58 7 F58 C4 C4 C 0 1 N N S 32.472 21.034 25.937 4.624 0.144 0.282 C4 F58 8 F58 O4 O4 O 0 1 N N N 31.296 20.561 25.245 5.921 -0.083 -0.273 O4 F58 9 F58 C5 C5 C 0 1 N N R 32.276 20.889 27.473 3.730 -1.067 0.004 C5 F58 10 F58 O5 O5 O 0 1 N N N 33.398 21.467 28.182 2.417 -0.814 0.509 O5 F58 11 F58 C6 C6 C 0 1 N N N 32.196 19.412 27.890 4.313 -2.301 0.696 C6 F58 12 F58 O6 O6 O 0 1 N N N 33.274 18.677 27.298 3.545 -3.453 0.343 O6 F58 13 F58 C7 C7 C 0 1 N N N 33.937 24.197 29.989 -0.637 -0.083 -0.150 C7 F58 14 F58 O7 O7 O 0 1 N N N 32.744 24.163 30.283 -0.483 -0.696 -1.188 O7 F58 15 F58 C8 C8 C 0 1 N N N 34.447 25.453 31.940 -2.934 -0.486 -0.254 C8 F58 16 F58 O8 O8 O 0 1 N N N 33.282 25.518 32.353 -2.780 -1.098 -1.289 O8 F58 17 F58 C9 C9 C 0 1 N N N 35.550 26.159 32.759 -4.314 -0.332 0.332 C9 F58 18 F58 C10 C10 C 0 1 N N N 36.933 26.171 32.091 -5.332 -1.034 -0.569 C10 F58 19 F58 C11 C11 C 0 1 N N N 37.891 27.059 32.918 -6.733 -0.877 0.026 C11 F58 20 F58 C12 C12 C 0 1 N N N 37.964 26.555 34.377 -7.081 0.609 0.126 C12 F58 21 F58 C13 C13 C 0 1 N N N 36.567 26.510 35.030 -6.063 1.312 1.027 C13 F58 22 F58 C14 C14 C 0 1 N N N 35.622 25.625 34.201 -4.662 1.155 0.432 C14 F58 23 F58 H1 H1 H 0 1 N N N 32.442 23.304 28.091 1.690 0.150 -1.167 H1 F58 24 F58 HN1 HN1 H 0 1 N N N 35.350 23.614 28.639 0.302 0.948 1.306 HN1 F58 25 F58 H2 H2 H 0 1 N N N 34.774 22.616 26.262 2.625 1.756 1.256 H2 F58 26 F58 HN2 HN2 H 0 1 N N N 35.809 24.850 30.519 -1.995 0.544 1.202 HN2 F58 27 F58 HO2 HO2 H 0 1 N Y N 34.193 24.664 25.280 1.061 2.864 -0.173 HO2 F58 28 F58 H3 H3 H 0 1 N N N 31.808 23.072 25.671 3.963 1.257 -1.445 H3 F58 29 F58 HO3 HO3 H 0 1 N Y N 32.493 22.168 23.615 4.451 3.360 -0.419 HO3 F58 30 F58 H4 H4 H 0 1 N N N 33.343 20.431 25.642 4.709 0.296 1.357 H4 F58 31 F58 HO4 HO4 H 0 1 N Y N 31.129 19.657 25.485 6.540 0.648 -0.139 HO4 F58 32 F58 H5 H5 H 0 1 N N N 31.342 21.394 27.761 3.678 -1.243 -1.070 H5 F58 33 F58 H61 H6 H 0 1 N N N 32.263 19.339 28.985 5.346 -2.442 0.378 H61 F58 34 F58 H62 H6A H 0 1 N N N 31.238 18.989 27.552 4.281 -2.161 1.777 H62 F58 35 F58 HO6 HO6 H 0 1 N Y N 33.218 17.766 27.560 3.858 -4.274 0.747 HO6 F58 36 F58 H9 H9 H 0 1 N N N 35.241 27.212 32.839 -4.339 -0.779 1.326 H9 F58 37 F58 H10 H10 H 0 1 N N N 37.329 25.146 32.046 -5.307 -0.587 -1.563 H10 F58 38 F58 H10A H10A H 0 0 N N N 36.845 26.575 31.072 -5.084 -2.093 -0.640 H10A F58 39 F58 H11 H11 H 0 1 N N N 38.895 27.023 32.471 -7.458 -1.378 -0.616 H11 F58 40 F58 H11A H11A H 0 0 N N N 37.523 28.095 32.910 -6.758 -1.324 1.020 H11A F58 41 F58 H12 H12 H 0 1 N N N 38.395 25.543 34.384 -7.056 1.056 -0.868 H12 F58 42 F58 H12A H12A H 0 0 N N N 38.608 27.232 34.957 -8.079 0.721 0.549 H12A F58 43 F58 H13 H13 H 0 1 N N N 36.654 26.097 36.046 -6.311 2.371 1.098 H13 F58 44 F58 H13A H13A H 0 0 N N N 36.157 27.530 35.082 -6.088 0.865 2.021 H13A F58 45 F58 H14 H14 H 0 1 N N N 34.617 25.642 34.649 -3.937 1.655 1.074 H14 F58 46 F58 H14A H14A H 0 0 N N N 36.002 24.593 34.191 -4.637 1.602 -0.562 H14A F58 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F58 C1 N1 SING N N 1 F58 C1 C2 SING N N 2 F58 C1 O5 SING N N 3 F58 N1 C7 SING N N 4 F58 C2 O2 SING N N 5 F58 C2 C3 SING N N 6 F58 N2 C7 SING N N 7 F58 N2 C8 SING N N 8 F58 C3 O3 SING N N 9 F58 C3 C4 SING N N 10 F58 C4 O4 SING N N 11 F58 C4 C5 SING N N 12 F58 C5 O5 SING N N 13 F58 C5 C6 SING N N 14 F58 C6 O6 SING N N 15 F58 C7 O7 DOUB N N 16 F58 C8 O8 DOUB N N 17 F58 C8 C9 SING N N 18 F58 C9 C10 SING N N 19 F58 C9 C14 SING N N 20 F58 C10 C11 SING N N 21 F58 C11 C12 SING N N 22 F58 C12 C13 SING N N 23 F58 C13 C14 SING N N 24 F58 C1 H1 SING N N 25 F58 N1 HN1 SING N N 26 F58 C2 H2 SING N N 27 F58 N2 HN2 SING N N 28 F58 O2 HO2 SING N N 29 F58 C3 H3 SING N N 30 F58 O3 HO3 SING N N 31 F58 C4 H4 SING N N 32 F58 O4 HO4 SING N N 33 F58 C5 H5 SING N N 34 F58 C6 H61 SING N N 35 F58 C6 H62 SING N N 36 F58 O6 HO6 SING N N 37 F58 C9 H9 SING N N 38 F58 C10 H10 SING N N 39 F58 C10 H10A SING N N 40 F58 C11 H11 SING N N 41 F58 C11 H11A SING N N 42 F58 C12 H12 SING N N 43 F58 C12 H12A SING N N 44 F58 C13 H13 SING N N 45 F58 C13 H13A SING N N 46 F58 C14 H14 SING N N 47 F58 C14 H14A SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F58 SMILES ACDLabs 12.01 "O=C(NC1OC(C(O)C(O)C1O)CO)NC(=O)C2CCCCC2" F58 InChI InChI 1.03 "InChI=1S/C14H24N2O7/c17-6-8-9(18)10(19)11(20)13(23-8)16-14(22)15-12(21)7-4-2-1-3-5-7/h7-11,13,17-20H,1-6H2,(H2,15,16,21,22)/t8-,9-,10+,11-,13-/m1/s1" F58 InChIKey InChI 1.03 CKZJXIPUYBZFJC-BZNQNGANSA-N F58 SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@@H](NC(=O)NC(=O)C2CCCCC2)[C@H](O)[C@@H](O)[C@@H]1O" F58 SMILES CACTVS 3.370 "OC[CH]1O[CH](NC(=O)NC(=O)C2CCCCC2)[CH](O)[CH](O)[CH]1O" F58 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1CCC(CC1)C(=O)NC(=O)N[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" F58 SMILES "OpenEye OEToolkits" 1.7.6 "C1CCC(CC1)C(=O)NC(=O)NC2C(C(C(C(O2)CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F58 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(cyclohexylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine" F58 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[[(2R,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]carbamoyl]cyclohexanecarboxamide" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support F58 "CARBOHYDRATE ISOMER" D PDB ? F58 "CARBOHYDRATE RING" pyranose PDB ? F58 "CARBOHYDRATE ANOMER" beta PDB ? F58 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F58 "Create component" 2012-11-22 EBI F58 "Initial release" 2013-12-11 RCSB F58 "Other modification" 2020-07-03 RCSB F58 "Modify synonyms" 2020-07-17 RCSB F58 "Modify internal type" 2020-07-17 RCSB F58 "Modify linking type" 2020-07-17 RCSB F58 "Modify atom id" 2020-07-17 RCSB F58 "Modify component atom id" 2020-07-17 RCSB F58 "Modify leaving atom flag" 2020-07-17 RCSB ##