data_F5L # _chem_comp.id F5L _chem_comp.name "(1R,2S)-1-hydroxy-2-{[N-({[7-(2-methylpropanoyl)-7-azaspiro[3.5]nonan-2-yl]oxy}carbonyl)-L-leucyl]amino}-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F5L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T3Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F5L C02 C1 C 0 1 N N N N N N -13.146 -12.317 -8.786 -1.056 -1.609 0.584 C02 F5L 1 F5L C04 C2 C 0 1 N N S N N N -11.967 -10.038 -8.618 1.282 -1.034 0.211 C04 F5L 2 F5L C05 C3 C 0 1 N N N N N N -10.507 -9.473 -8.815 1.969 -2.399 0.130 C05 F5L 3 F5L C06 C4 C 0 1 N N N N N N -9.471 -10.049 -7.783 3.310 -2.339 0.863 C06 F5L 4 F5L C07 C5 C 0 1 N N N N N N -8.041 -9.559 -8.065 3.065 -2.134 2.360 C07 F5L 5 F5L C08 C6 C 0 1 N N N N N N -9.876 -9.763 -6.312 4.069 -3.650 0.646 C08 F5L 6 F5L C09 C7 C 0 1 N N N N N N -12.942 -9.282 -9.608 2.019 -0.049 -0.659 C09 F5L 7 F5L C11 C8 C 0 1 N N S N N N -15.018 -7.891 -10.256 3.860 1.503 -1.037 C11 F5L 8 F5L C12 C9 C 0 1 N N N N N N -16.511 -8.231 -9.868 4.792 2.305 -0.127 C12 F5L 9 F5L C13 C10 C 0 1 N N S N N N -16.798 -9.755 -9.854 3.965 3.037 0.932 C13 F5L 10 F5L C14 C11 C 0 1 N N N N N N -18.116 -10.068 -9.164 3.313 2.048 1.872 C14 F5L 11 F5L C16 C12 C 0 1 N N N N N N -18.163 -11.294 -11.151 5.140 2.909 3.018 C16 F5L 12 F5L C17 C13 C 0 1 N N N N N N -17.041 -10.261 -11.289 4.882 3.882 1.846 C17 F5L 13 F5L C19 C14 C 0 1 N N R N N N -14.839 -6.326 -10.254 4.672 0.871 -2.170 C19 F5L 14 F5L C23 C15 C 0 1 N N N N N N -14.081 -14.584 -8.797 -3.319 -2.116 1.148 C23 F5L 15 F5L C24 C16 C 0 1 N N N N N N -13.439 -16.028 -8.680 -4.543 -2.778 0.492 C24 F5L 16 F5L C25 C17 C 0 1 N N N N N N -14.674 -16.711 -9.416 -5.190 -1.387 0.486 C25 F5L 17 F5L C26 C18 C 0 1 N N N N N N -14.070 -17.714 -10.411 -4.889 -0.580 -0.776 C26 F5L 18 F5L C27 C19 C 0 1 N N N N N N -15.096 -18.601 -11.195 -5.391 0.856 -0.586 C27 F5L 19 F5L C29 C20 C 0 1 N N N N N N -16.343 -20.718 -10.248 -7.740 1.477 -0.868 C29 F5L 20 F5L C30 C21 C 0 1 N N N N N N -15.698 -21.823 -11.172 -9.161 1.518 -0.369 C30 F5L 21 F5L C31 C22 C 0 1 N N N N N N -16.495 -22.099 -12.478 -9.853 2.773 -0.905 C31 F5L 22 F5L C32 C23 C 0 1 N N N N N N -15.459 -23.149 -10.422 -9.909 0.276 -0.856 C32 F5L 23 F5L C34 C24 C 0 1 N N N N N N -16.737 -18.306 -9.365 -7.165 0.038 1.024 C34 F5L 24 F5L C35 C25 C 0 1 N N N N N N -15.777 -17.346 -8.574 -6.675 -1.404 0.844 C35 F5L 25 F5L C36 C26 C 0 1 N N N N N N -15.062 -15.236 -9.844 -4.280 -1.034 1.669 C36 F5L 26 F5L N03 N1 N 0 1 N N N N N N -11.963 -11.527 -8.820 -0.102 -1.155 -0.253 N03 F5L 27 F5L N10 N2 N 0 1 N N N N N N -14.080 -8.495 -9.260 3.207 0.448 -0.258 N10 F5L 28 F5L N15 N3 N 0 1 N N N N N N -18.930 -10.976 -9.912 3.988 2.000 3.033 N15 F5L 29 F5L N28 N4 N 0 1 N N N N N N -16.052 -19.309 -10.273 -6.798 0.814 -0.168 N28 F5L 30 F5L O01 O1 O 0 1 N N N N N N -14.182 -11.895 -8.233 -0.754 -2.003 1.693 O01 F5L 31 F5L O18 O2 O 0 1 N N N N N N -18.508 -9.641 -8.067 2.325 1.393 1.615 O18 F5L 32 F5L O20 O3 O 0 1 N N N N N N -13.550 -6.107 -10.882 3.788 0.219 -3.083 O20 F5L 33 F5L O21 O4 O 0 1 N N N N N N -12.758 -9.467 -10.840 1.544 0.298 -1.720 O21 F5L 34 F5L O22 O5 O 0 1 N N N N N N -13.234 -13.592 -9.395 -2.345 -1.620 0.193 O22 F5L 35 F5L O33 O6 O 0 1 N N N N N N -17.182 -21.130 -9.417 -7.443 2.040 -1.901 O33 F5L 36 F5L H1 H1 H 0 1 N N N N N N -12.285 -9.815 -7.589 1.290 -0.684 1.243 H1 F5L 37 F5L H2 H2 H 0 1 N N N N N N -10.168 -9.729 -9.830 1.334 -3.153 0.595 H2 F5L 38 F5L H3 H3 H 0 1 N N N N N N -10.538 -8.379 -8.704 2.137 -2.659 -0.915 H3 F5L 39 F5L H4 H4 H 0 1 N N N N N N -9.471 -11.142 -7.910 3.900 -1.509 0.475 H4 F5L 40 F5L H5 H5 H 0 1 N N N N N N -7.353 -9.986 -7.321 4.020 -2.019 2.872 H5 F5L 41 F5L H6 H6 H 0 1 N N N N N N -7.736 -9.879 -9.072 2.462 -1.239 2.510 H6 F5L 42 F5L H7 H7 H 0 1 N N N N N N -8.011 -8.461 -8.004 2.538 -2.999 2.763 H7 F5L 43 F5L H8 H8 H 0 1 N N N N N N -9.120 -10.186 -5.634 4.244 -3.796 -0.420 H8 F5L 44 F5L H9 H9 H 0 1 N N N N N N -9.942 -8.676 -6.155 5.025 -3.607 1.168 H9 F5L 45 F5L H10 H10 H 0 1 N N N N N N -10.853 -10.224 -6.105 3.479 -4.480 1.035 H10 F5L 46 F5L H11 H11 H 0 1 N N N N N N -14.808 -8.279 -11.264 3.104 2.165 -1.458 H11 F5L 47 F5L H12 H12 H 0 1 N N N N N N -16.714 -7.826 -8.866 5.493 1.629 0.363 H12 F5L 48 F5L H13 H13 H 0 1 N N N N N N -17.181 -7.754 -10.599 5.344 3.032 -0.723 H13 F5L 49 F5L H14 H14 H 0 1 N N N N N N -15.967 -10.301 -9.384 3.212 3.667 0.458 H14 F5L 50 F5L H15 H15 H 0 1 N N N N N N -18.828 -11.242 -12.026 6.060 2.349 2.848 H15 F5L 51 F5L H16 H16 H 0 1 N N N N N N -17.734 -12.304 -11.076 5.201 3.457 3.959 H16 F5L 52 F5L H17 H17 H 0 1 N N N N N N -16.132 -10.728 -11.695 5.813 4.136 1.338 H17 F5L 53 F5L H18 H18 H 0 1 N N N N N N -17.353 -9.434 -11.944 4.370 4.780 2.191 H18 F5L 54 F5L H19 H19 H 0 1 N N N N N N -15.530 -5.599 -9.802 5.229 1.648 -2.694 H19 F5L 55 F5L H21 H21 H 0 1 N N N N N N -14.590 -14.270 -7.874 -2.869 -2.717 1.938 H21 F5L 56 F5L H22 H22 H 0 1 N N N N N N -13.304 -16.366 -7.642 -4.345 -3.172 -0.505 H22 F5L 57 F5L H23 H23 H 0 1 N N N N N N -12.490 -16.132 -9.226 -5.051 -3.495 1.138 H23 F5L 58 F5L H24 H24 H 0 1 N N N N N N -13.403 -18.385 -9.850 -3.814 -0.570 -0.954 H24 F5L 59 F5L H25 H25 H 0 1 N N N N N N -13.483 -17.146 -11.148 -5.396 -1.034 -1.628 H25 F5L 60 F5L H26 H26 H 0 1 N N N N N N -15.672 -17.959 -11.878 -4.797 1.352 0.182 H26 F5L 61 F5L H27 H27 H 0 1 N N N N N N -14.543 -19.352 -11.778 -5.305 1.401 -1.526 H27 F5L 62 F5L H28 H28 H 0 1 N N N N N N -14.711 -21.443 -11.475 -9.163 1.540 0.721 H28 F5L 63 F5L H29 H29 H 0 1 N N N N N N -16.665 -21.152 -13.012 -9.931 2.710 -1.990 H29 F5L 64 F5L H30 H30 H 0 1 N N N N N N -15.921 -22.784 -13.120 -10.851 2.850 -0.474 H30 F5L 65 F5L H31 H31 H 0 1 N N N N N N -17.463 -22.557 -12.227 -9.271 3.654 -0.633 H31 F5L 66 F5L H32 H32 H 0 1 N N N N N N -14.895 -22.952 -9.498 -9.416 -0.618 -0.474 H32 F5L 67 F5L H33 H33 H 0 1 N N N N N N -16.427 -23.607 -10.170 -10.937 0.306 -0.494 H33 F5L 68 F5L H34 H34 H 0 1 N N N N N N -14.885 -23.834 -11.063 -9.907 0.254 -1.945 H34 F5L 69 F5L H35 H35 H 0 1 N N N N N N -17.402 -17.686 -9.985 -8.248 0.043 1.144 H35 F5L 70 F5L H36 H36 H 0 1 N N N N N N -17.336 -18.866 -8.632 -6.697 0.475 1.906 H36 F5L 71 F5L H37 H37 H 0 1 N N N N N N -15.302 -17.924 -7.768 -7.238 -1.883 0.042 H37 F5L 72 F5L H38 H38 H 0 1 N N N N N N -16.383 -16.538 -8.138 -6.820 -1.957 1.772 H38 F5L 73 F5L H39 H39 H 0 1 N N N N N N -14.805 -15.002 -10.888 -4.715 -1.267 2.641 H39 F5L 74 F5L H40 H40 H 0 1 N N N N N N -16.119 -14.992 -9.663 -3.870 -0.025 1.619 H40 F5L 75 F5L H41 H41 H 0 1 N N N N N N -11.089 -11.984 -8.986 -0.332 -0.909 -1.163 H41 F5L 76 F5L H42 H42 H 0 1 N N N N N N -14.262 -8.337 -8.289 3.628 0.107 0.546 H42 F5L 77 F5L H43 H43 H 0 1 N N N N N N -19.831 -11.327 -9.656 3.745 1.437 3.785 H43 F5L 78 F5L H44 H44 H 0 1 N N N N N N -13.369 -5.175 -10.918 3.260 -0.485 -2.684 H44 F5L 79 F5L S1 S1 S 0 1 N Y N N N N ? ? ? 5.831 -0.342 -1.480 S1 F5L 80 F5L O1 O7 O 0 1 N N N N N N ? ? ? 5.129 -1.462 -0.959 O1 F5L 81 F5L O3 O8 O 0 1 N N N N N N ? ? ? 6.570 -0.892 -2.691 O3 F5L 82 F5L O2 O9 O 0 1 N N N N N N ? ? ? 6.840 0.309 -0.719 O2 F5L 83 F5L H20 H20 H 0 1 N N N N N N ? ? ? 7.234 -1.562 -2.475 H20 F5L 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F5L C31 C30 SING N N 1 F5L C17 C16 SING N N 2 F5L C17 C13 SING N N 3 F5L C27 C26 SING N N 4 F5L C27 N28 SING N N 5 F5L C30 C32 SING N N 6 F5L C30 C29 SING N N 7 F5L C16 N15 SING N N 8 F5L O20 C19 SING N N 9 F5L O21 C09 DOUB N N 10 F5L C26 C25 SING N N 11 F5L N28 C29 SING N N 12 F5L N28 C34 SING N N 13 F5L C11 C19 SING N N 14 F5L C11 C12 SING N N 15 F5L C11 N10 SING N N 16 F5L C29 O33 DOUB N N 17 F5L N15 C14 SING N N 18 F5L C12 C13 SING N N 19 F5L C13 C14 SING N N 20 F5L C36 C25 SING N N 21 F5L C36 C23 SING N N 22 F5L C09 N10 SING N N 23 F5L C09 C04 SING N N 24 F5L C25 C24 SING N N 25 F5L C25 C35 SING N N 26 F5L O22 C23 SING N N 27 F5L O22 C02 SING N N 28 F5L C34 C35 SING N N 29 F5L C14 O18 DOUB N N 30 F5L N03 C02 SING N N 31 F5L N03 C04 SING N N 32 F5L C05 C04 SING N N 33 F5L C05 C06 SING N N 34 F5L C23 C24 SING N N 35 F5L C02 O01 DOUB N N 36 F5L C07 C06 SING N N 37 F5L C06 C08 SING N N 38 F5L C04 H1 SING N N 39 F5L C05 H2 SING N N 40 F5L C05 H3 SING N N 41 F5L C06 H4 SING N N 42 F5L C07 H5 SING N N 43 F5L C07 H6 SING N N 44 F5L C07 H7 SING N N 45 F5L C08 H8 SING N N 46 F5L C08 H9 SING N N 47 F5L C08 H10 SING N N 48 F5L C11 H11 SING N N 49 F5L C12 H12 SING N N 50 F5L C12 H13 SING N N 51 F5L C13 H14 SING N N 52 F5L C16 H15 SING N N 53 F5L C16 H16 SING N N 54 F5L C17 H17 SING N N 55 F5L C17 H18 SING N N 56 F5L C19 H19 SING N N 57 F5L C23 H21 SING N N 58 F5L C24 H22 SING N N 59 F5L C24 H23 SING N N 60 F5L C26 H24 SING N N 61 F5L C26 H25 SING N N 62 F5L C27 H26 SING N N 63 F5L C27 H27 SING N N 64 F5L C30 H28 SING N N 65 F5L C31 H29 SING N N 66 F5L C31 H30 SING N N 67 F5L C31 H31 SING N N 68 F5L C32 H32 SING N N 69 F5L C32 H33 SING N N 70 F5L C32 H34 SING N N 71 F5L C34 H35 SING N N 72 F5L C34 H36 SING N N 73 F5L C35 H37 SING N N 74 F5L C35 H38 SING N N 75 F5L C36 H39 SING N N 76 F5L C36 H40 SING N N 77 F5L N03 H41 SING N N 78 F5L N10 H42 SING N N 79 F5L N15 H43 SING N N 80 F5L O20 H44 SING N N 81 F5L C19 S1 SING N N 82 F5L S1 O1 DOUB N N 83 F5L S1 O3 SING N N 84 F5L S1 O2 DOUB N N 85 F5L O3 H20 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F5L SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OC1CC2(CCN(CC2)C(=O)C(C)C)C1)C(O)S(=O)(=O)O" F5L InChI InChI 1.03 "InChI=1S/C26H44N4O9S/c1-15(2)11-19(22(32)28-20(24(34)40(36,37)38)12-17-5-8-27-21(17)31)29-25(35)39-18-13-26(14-18)6-9-30(10-7-26)23(33)16(3)4/h15-20,24,34H,5-14H2,1-4H3,(H,27,31)(H,28,32)(H,29,35)(H,36,37,38)/t17-,19-,20-,24+/m0/s1" F5L InChIKey InChI 1.03 SQVQHYGKQGMSJR-TYZOXTDXSA-N F5L SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC1CC2(CCN(CC2)C(=O)C(C)C)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" F5L SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC1CC2(CCN(CC2)C(=O)C(C)C)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" F5L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CC3(C2)CCN(CC3)C(=O)C(C)C" F5L SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CC3(C2)CCN(CC3)C(=O)C(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F5L "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-1-hydroxy-2-{[N-({[7-(2-methylpropanoyl)-7-azaspiro[3.5]nonan-2-yl]oxy}carbonyl)-L-leucyl]amino}-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" F5L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[7-(2-methylpropanoyl)-7-azaspiro[3.5]nonan-2-yl]oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F5L "Create component" 2021-12-14 RCSB F5L "Initial release" 2021-12-22 RCSB F5L "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id F5L _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #