data_F6G
#
_chem_comp.id F6G
_chem_comp.name "6-amino-3-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,4-dihydro-1,3,5-triazin-2(1H)-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H17 N4 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-03-05
_chem_comp.pdbx_modified_date 2019-06-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 470.161
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code F6G
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6CM2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F6G C2 C1 C 0 1 N N N 57.357 38.898 138.337 -5.266 -0.584 0.608 C2 F6G 1
F6G C4 C2 C 0 1 N N N 59.562 39.215 139.119 -6.737 -2.448 0.375 C4 F6G 2
F6G C6 C3 C 0 1 N N N 58.837 37.112 138.482 -5.640 -1.587 -1.564 C6 F6G 3
F6G N4 N1 N 0 1 N N N 60.589 40.100 139.624 -7.586 -3.336 0.992 N4 F6G 4
F6G N03 N2 N 0 1 N N N 59.825 37.930 138.955 -6.549 -2.540 -0.910 N03 F6G 5
F6G N1 N3 N 0 1 N N N 57.569 37.551 138.187 -4.990 -0.576 -0.714 N1 F6G 6
F6G "C1'" C4 C 0 1 N N R 56.579 36.718 137.643 -4.070 0.410 -1.285 "C1'" F6G 7
F6G "C2'" C5 C 0 1 N N N 56.749 36.335 136.124 -4.616 1.840 -1.074 "C2'" F6G 8
F6G "C3'" C6 C 0 1 N N S 56.301 35.141 135.982 -3.354 2.685 -0.789 "C3'" F6G 9
F6G "O3'" O1 O 0 1 N N N 54.830 34.990 135.803 -3.194 3.697 -1.785 "O3'" F6G 10
F6G "C4'" C7 C 0 1 N N R 56.579 34.428 137.422 -2.195 1.666 -0.861 "C4'" F6G 11
F6G "C5'" C8 C 0 1 N N N 57.909 33.645 137.526 -1.135 1.990 0.193 "C5'" F6G 12
F6G "O5'" O2 O 0 1 N N N 58.917 34.289 136.771 -0.021 1.110 0.034 "O5'" F6G 13
F6G PA P1 P 0 1 N N N 60.536 33.928 137.107 1.284 1.167 0.976 PA F6G 14
F6G O1A O3 O 0 1 N N N 61.461 34.779 136.239 1.846 2.536 0.958 O1A F6G 15
F6G O2A O4 O 0 1 N N N 60.934 34.043 138.580 0.874 0.775 2.483 O2A F6G 16
F6G O3A O5 O 0 1 N N N 60.646 32.412 136.545 2.385 0.127 0.432 O3A F6G 17
F6G PB P2 P 0 1 N N N 61.901 31.444 136.798 3.957 -0.084 0.707 PB F6G 18
F6G O1B O6 O 0 1 N N N 63.122 32.285 137.229 4.157 -0.881 2.092 O1B F6G 19
F6G O2B O7 O 0 1 N N N 62.152 30.963 135.415 4.624 1.235 0.796 O2B F6G 20
F6G O3B O8 O 0 1 N N N 61.315 30.399 138.010 4.605 -0.932 -0.498 O3B F6G 21
F6G PG P3 P 0 1 N N N 60.647 31.038 139.441 6.114 -1.214 -0.983 PG F6G 22
F6G O3G O9 O 0 1 N N N 60.810 30.251 140.715 6.766 -2.366 -0.067 O3G F6G 23
F6G O1G O10 O 0 1 N N N 61.421 32.302 139.792 6.103 -1.692 -2.520 O1G F6G 24
F6G O2G O11 O 0 1 N N N 59.143 31.300 139.251 6.912 0.026 -0.858 O2G F6G 25
F6G "O4'" O12 O 0 1 N N N 56.492 35.352 138.311 -2.809 0.389 -0.581 "O4'" F6G 26
F6G O2 O13 O 0 1 N N N 56.289 39.395 138.071 -4.747 0.242 1.333 O2 F6G 27
F6G N3 N4 N 0 1 N N N 58.331 39.699 138.808 -6.109 -1.488 1.131 N3 F6G 28
F6G H1 H1 H 0 1 N N N 58.714 36.321 139.236 -4.856 -2.160 -2.060 H1 F6G 29
F6G H2 H2 H 0 1 N N N 59.228 36.674 137.552 -6.204 -1.062 -2.335 H2 F6G 30
F6G H3 H3 H 0 1 N N N 61.494 39.739 139.848 -8.036 -4.019 0.470 H3 F6G 31
F6G H4 H4 H 0 1 N N N 60.394 41.073 139.749 -7.735 -3.279 1.948 H4 F6G 32
F6G H5 H5 H 0 1 N N N 55.598 37.204 137.746 -3.915 0.214 -2.346 H5 F6G 33
F6G H6 H6 H 0 1 N N N 57.811 36.375 135.842 -5.117 2.194 -1.975 H6 F6G 34
F6G H7 H7 H 0 1 N N N 56.176 37.030 135.493 -5.297 1.867 -0.224 H7 F6G 35
F6G H8 H8 H 0 1 N N N 56.833 34.567 135.209 -3.410 3.131 0.204 H8 F6G 36
F6G H9 H9 H 0 1 N N N 54.615 34.070 135.708 -3.924 4.330 -1.824 H9 F6G 37
F6G H10 H10 H 0 1 N N N 55.770 33.695 137.555 -1.752 1.666 -1.857 H10 F6G 38
F6G H11 H11 H 0 1 N N N 57.761 32.626 137.140 -0.804 3.021 0.071 H11 F6G 39
F6G H12 H12 H 0 1 N N N 58.220 33.596 138.580 -1.561 1.861 1.188 H12 F6G 40
F6G H13 H13 H 0 1 N N N 61.681 34.624 138.662 0.498 -0.111 2.571 H13 F6G 41
F6G H14 H14 H 0 1 N N N 63.756 32.308 136.522 3.746 -1.755 2.106 H14 F6G 42
F6G H15 H15 H 0 1 N N N 59.957 30.098 141.105 6.294 -3.209 -0.100 H15 F6G 43
F6G H16 H16 H 0 1 N N N 60.823 33.039 139.831 6.981 -1.880 -2.880 H16 F6G 44
F6G H17 H17 H 0 1 N N N 58.144 40.674 138.932 -6.283 -1.462 2.085 H17 F6G 45
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F6G O2B PB DOUB N N 1
F6G "O3'" "C3'" SING N N 2
F6G "C3'" "C2'" SING N N 3
F6G "C3'" "C4'" SING N N 4
F6G "C2'" "C1'" SING N N 5
F6G O1A PA DOUB N N 6
F6G O3A PB SING N N 7
F6G O3A PA SING N N 8
F6G "O5'" PA SING N N 9
F6G "O5'" "C5'" SING N N 10
F6G PB O1B SING N N 11
F6G PB O3B SING N N 12
F6G PA O2A SING N N 13
F6G "C4'" "C5'" SING N N 14
F6G "C4'" "O4'" SING N N 15
F6G "C1'" N1 SING N N 16
F6G "C1'" "O4'" SING N N 17
F6G O3B PG SING N N 18
F6G O2 C2 DOUB N N 19
F6G N1 C2 SING N N 20
F6G N1 C6 SING N N 21
F6G C2 N3 SING N N 22
F6G C6 N03 SING N N 23
F6G N3 C4 SING N N 24
F6G N03 C4 DOUB N N 25
F6G C4 N4 SING N N 26
F6G O2G PG DOUB N N 27
F6G PG O1G SING N N 28
F6G PG O3G SING N N 29
F6G C6 H1 SING N N 30
F6G C6 H2 SING N N 31
F6G N4 H3 SING N N 32
F6G N4 H4 SING N N 33
F6G "C1'" H5 SING N N 34
F6G "C2'" H6 SING N N 35
F6G "C2'" H7 SING N N 36
F6G "C3'" H8 SING N N 37
F6G "O3'" H9 SING N N 38
F6G "C4'" H10 SING N N 39
F6G "C5'" H11 SING N N 40
F6G "C5'" H12 SING N N 41
F6G O2A H13 SING N N 42
F6G O1B H14 SING N N 43
F6G O3G H15 SING N N 44
F6G O1G H16 SING N N 45
F6G N3 H17 SING N N 46
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F6G SMILES ACDLabs 12.01 "C1(NC(N)=NCN1C2OC(C(C2)O)COP(O)(=O)OP(O)(OP(O)(O)=O)=O)=O"
F6G InChI InChI 1.03 "InChI=1S/C8H17N4O13P3/c9-7-10-3-12(8(14)11-7)6-1-4(13)5(23-6)2-22-27(18,19)25-28(20,21)24-26(15,16)17/h4-6,13H,1-3H2,(H,18,19)(H,20,21)(H2,15,16,17)(H3,9,10,11,14)/t4-,5+,6+/m0/s1"
F6G InChIKey InChI 1.03 YEGZZVDXUFGWTE-KVQBGUIXSA-N
F6G SMILES_CANONICAL CACTVS 3.385 "NC1=NCN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)N1"
F6G SMILES CACTVS 3.385 "NC1=NCN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)N1"
F6G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H](O[C@H]1N2CN=C(NC2=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"
F6G SMILES "OpenEye OEToolkits" 2.0.6 "C1C(C(OC1N2CN=C(NC2=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
F6G "SYSTEMATIC NAME" ACDLabs 12.01 "6-amino-3-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,4-dihydro-1,3,5-triazin-2(1H)-one"
F6G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},5~{R})-5-(6-azanyl-2-oxidanylidene-1,4-dihydro-1,3,5-triazin-3-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F6G "Create component" 2018-03-05 RCSB
F6G "Initial release" 2019-06-19 RCSB
##