data_F6U # _chem_comp.id F6U _chem_comp.name "[(2R,3R)-3-[2-(6-aminopurin-9-yl)ethanoylamino]-4-oxidanyl-butan-2-yl] dihydrogen phosphate" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H17 N6 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-03 _chem_comp.pdbx_modified_date 2020-11-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 360.263 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F6U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BPF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F6U N1 N1 N 0 1 Y N N -17.720 -23.388 11.177 5.668 -1.877 0.112 N1 F6U 1 F6U C2 C1 C 0 1 Y N N -17.966 -24.660 10.466 4.484 -2.304 -0.288 C2 F6U 2 F6U N3 N2 N 0 1 Y N N -18.630 -24.412 9.200 3.500 -1.483 -0.586 N3 F6U 3 F6U C4 C2 C 0 1 Y N N -18.964 -23.177 8.784 3.665 -0.167 -0.494 C4 F6U 4 F6U OP1 O1 O 0 1 N N N -25.843 -25.215 2.497 -4.958 -1.343 0.935 OP1 F6U 5 F6U P P1 P 0 1 N N N -24.398 -25.021 2.226 -5.036 -0.431 -0.228 P F6U 6 F6U OP2 O2 O 0 1 N N N -23.809 -25.993 1.278 -6.218 0.637 0.006 OP2 F6U 7 F6U "O3'" O3 O 0 1 N N N -23.542 -25.104 3.592 -3.636 0.345 -0.397 "O3'" F6U 8 F6U "C3'" C3 C 0 1 N N R -24.191 -24.834 4.834 -3.037 1.106 0.654 "C3'" F6U 9 F6U C3A C4 C 0 1 N N N -24.299 -23.319 5.036 -2.883 2.561 0.206 C3A F6U 10 F6U "C2'" C5 C 0 1 N N R -23.398 -25.470 5.998 -1.660 0.525 0.983 "C2'" F6U 11 F6U "C1'" C6 C 0 1 N N N -23.314 -26.993 5.853 -1.800 -0.962 1.311 "C1'" F6U 12 F6U "O1'" O4 O 0 1 N N N -24.632 -27.602 5.960 -2.456 -1.629 0.230 "O1'" F6U 13 F6U "N2'" N3 N 0 1 N N N -22.008 -25.019 5.959 -0.772 0.691 -0.170 "N2'" F6U 14 F6U C2A C7 C 0 1 N N N -21.493 -24.174 6.855 0.563 0.737 0.009 C2A F6U 15 F6U O2A O5 O 0 1 N N N -22.143 -23.687 7.772 1.029 0.643 1.125 O2A F6U 16 F6U C2B C8 C 0 1 N N N -20.025 -23.798 6.621 1.477 0.907 -1.177 C2B F6U 17 F6U N9 N4 N 0 1 Y N N -19.571 -22.797 7.659 2.869 0.927 -0.722 N9 F6U 18 F6U C8 C9 C 0 1 Y N N -19.700 -21.483 7.708 3.612 2.037 -0.447 C8 F6U 19 F6U N7 N5 N 0 1 Y N N -19.182 -21.024 8.845 4.806 1.689 -0.067 N7 F6U 20 F6U C5 C10 C 0 1 Y N N -18.712 -22.084 9.514 4.906 0.338 -0.073 C5 F6U 21 F6U C6 C11 C 0 1 Y N N -18.076 -22.198 10.682 5.926 -0.579 0.234 C6 F6U 22 F6U N6 N6 N 0 1 N N N -17.842 -21.073 11.344 7.170 -0.141 0.653 N6 F6U 23 F6U H1 H1 H 0 1 N N N -17.690 -25.636 10.836 4.317 -3.368 -0.374 H1 F6U 24 F6U HOP2 H3 H 0 0 N N N -24.479 -26.602 0.990 -6.327 1.268 -0.719 H3 F6U 25 F6U H4 H4 H 0 1 N N N -25.205 -25.261 4.830 -3.671 1.064 1.540 H4 F6U 26 F6U H5 H5 H 0 1 N N N -24.799 -23.111 5.993 -2.249 2.603 -0.680 H5 F6U 27 F6U H6 H6 H 0 1 N N N -23.291 -22.878 5.045 -3.864 2.975 -0.029 H6 F6U 28 F6U H7 H7 H 0 1 N N N -24.884 -22.880 4.214 -2.426 3.142 1.007 H7 F6U 29 F6U H8 H8 H 0 1 N N N -23.870 -25.209 6.957 -1.241 1.049 1.843 H8 F6U 30 F6U H9 H9 H 0 1 N N N -22.667 -27.395 6.647 -0.811 -1.396 1.458 H9 F6U 31 F6U H10 H10 H 0 1 N N N -22.884 -27.237 4.871 -2.388 -1.081 2.221 H10 F6U 32 F6U H11 H11 H 0 1 N Y N -24.554 -28.544 5.867 -2.578 -2.578 0.369 H11 F6U 33 F6U H12 H12 H 0 1 N N N -21.416 -25.359 5.228 -1.145 0.766 -1.062 H12 F6U 34 F6U H13 H13 H 0 1 N N N -19.403 -24.702 6.691 1.333 0.077 -1.869 H13 F6U 35 F6U H14 H14 H 0 1 N N N -19.918 -23.356 5.619 1.246 1.845 -1.683 H14 F6U 36 F6U H15 H15 H 0 1 N N N -20.156 -20.874 6.942 3.260 3.055 -0.533 H15 F6U 37 F6U H16 H16 H 0 1 N N N -17.386 -21.283 12.209 7.346 0.809 0.738 H16 F6U 38 F6U H17 H17 H 0 1 N N N -17.255 -20.479 10.794 7.866 -0.784 0.862 H17 F6U 39 F6U OP3 OP4 O 0 1 N Y N -23.699 -23.696 2.179 -5.340 -1.285 -1.559 OP4 F6U 40 F6U HOP3 H2 H 0 0 N Y N -24.324 -23.001 2.349 -6.170 -1.779 -1.528 H2 F6U 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F6U OP2 P SING N N 1 F6U P OP1 DOUB N N 2 F6U P "O3'" SING N N 3 F6U "O3'" "C3'" SING N N 4 F6U "C3'" C3A SING N N 5 F6U "C3'" "C2'" SING N N 6 F6U "C1'" "O1'" SING N N 7 F6U "C1'" "C2'" SING N N 8 F6U "N2'" "C2'" SING N N 9 F6U "N2'" C2A SING N N 10 F6U C2B C2A SING N N 11 F6U C2B N9 SING N N 12 F6U C2A O2A DOUB N N 13 F6U N9 C8 SING Y N 14 F6U N9 C4 SING Y N 15 F6U C8 N7 DOUB Y N 16 F6U C4 N3 SING Y N 17 F6U C4 C5 DOUB Y N 18 F6U N7 C5 SING Y N 19 F6U N3 C2 DOUB Y N 20 F6U C5 C6 SING Y N 21 F6U C2 N1 SING Y N 22 F6U C6 N1 DOUB Y N 23 F6U C6 N6 SING N N 24 F6U C2 H1 SING N N 25 F6U OP2 HOP2 SING N N 26 F6U "C3'" H4 SING N N 27 F6U C3A H5 SING N N 28 F6U C3A H6 SING N N 29 F6U C3A H7 SING N N 30 F6U "C2'" H8 SING N N 31 F6U "C1'" H9 SING N N 32 F6U "C1'" H10 SING N N 33 F6U "O1'" H11 SING N N 34 F6U "N2'" H12 SING N N 35 F6U C2B H13 SING N N 36 F6U C2B H14 SING N N 37 F6U C8 H15 SING N N 38 F6U N6 H16 SING N N 39 F6U N6 H17 SING N N 40 F6U P OP3 SING N N 41 F6U OP3 HOP3 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F6U InChI InChI 1.03 "InChI=1S/C11H17N6O6P/c1-6(23-24(20,21)22)7(3-18)16-8(19)2-17-5-15-9-10(12)13-4-14-11(9)17/h4-7,18H,2-3H2,1H3,(H,16,19)(H2,12,13,14)(H2,20,21,22)/t6-,7-/m1/s1" F6U InChIKey InChI 1.03 USXONNDLXUHCOD-RNFRBKRXSA-N F6U SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[P](O)(O)=O)[C@@H](CO)NC(=O)Cn1cnc2c(N)ncnc12" F6U SMILES CACTVS 3.385 "C[CH](O[P](O)(O)=O)[CH](CO)NC(=O)Cn1cnc2c(N)ncnc12" F6U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](CO)NC(=O)Cn1cnc2c1ncnc2N)OP(=O)(O)O" F6U SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(CO)NC(=O)Cn1cnc2c1ncnc2N)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id F6U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R})-3-[2-(6-aminopurin-9-yl)ethanoylamino]-4-oxidanyl-butan-2-yl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F6U "Create component" 2020-04-03 PDBJ F6U "Modify internal type" 2020-11-04 PDBJ F6U "Modify linking type" 2020-11-04 PDBJ F6U "Modify leaving atom flag" 2020-11-04 PDBJ F6U "Modify linking type" 2020-11-18 PDBJ F6U "Initial release" 2020-11-25 RCSB ##