data_F74 # _chem_comp.id F74 _chem_comp.name "8-chloro-2'-deoxyguanosine 5'-(dihydrogen phosphate)" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 Cl N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-03-08 _chem_comp.pdbx_modified_date 2019-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.666 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F74 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6CPQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F74 C6 C1 C 0 1 N N N -13.505 1.512 7.718 -4.942 -1.186 -0.252 C6 F74 1 F74 C5 C2 C 0 1 Y N N -12.648 1.910 6.580 -3.542 -1.013 0.149 C5 F74 2 F74 C8 C3 C 0 1 Y N N -11.244 2.401 5.071 -1.521 -1.124 0.919 C8 F74 3 F74 C4 C4 C 0 1 Y N N -13.330 2.483 5.402 -2.891 0.154 -0.232 C4 F74 4 F74 C2 C5 C 0 1 N N N -15.394 2.233 6.501 -4.877 0.875 -1.308 C2 F74 5 F74 O6 O1 O 0 1 N N N -13.010 1.012 8.752 -5.559 -2.193 0.059 O6 F74 6 F74 P P1 P 0 1 N N N -8.916 0.264 1.218 4.982 -0.572 -0.839 P F74 7 F74 OP1 O2 O 0 1 N N N -8.925 -1.092 0.549 6.051 0.263 -0.247 OP1 F74 8 F74 OP2 O3 O 0 1 N N N -8.457 0.414 2.650 4.876 -1.960 -0.030 OP2 F74 9 F74 "O5'" O4 O 0 1 N N N -10.401 0.854 1.187 3.578 0.211 -0.748 "O5'" F74 10 F74 "C5'" C6 C 0 1 N N N -10.450 2.236 0.876 3.045 0.714 0.479 "C5'" F74 11 F74 "C4'" C7 C 0 1 N N R -11.856 2.765 1.037 1.704 1.400 0.210 "C4'" F74 12 F74 "C3'" C8 C 0 1 N N S -11.772 4.263 1.172 1.169 2.059 1.501 "C3'" F74 13 F74 "C2'" C9 C 0 1 N N N -11.897 4.541 2.665 -0.358 1.835 1.431 "C2'" F74 14 F74 "C1'" C10 C 0 1 N N R -12.706 3.347 3.160 -0.565 1.066 0.108 "C1'" F74 15 F74 "O4'" O5 O 0 1 N N N -12.451 2.279 2.242 0.702 0.423 -0.147 "O4'" F74 16 F74 N9 N1 N 0 1 Y N N -12.394 2.796 4.507 -1.624 0.066 0.259 N9 F74 17 F74 N3 N2 N 0 1 N N N -14.673 2.623 5.423 -3.580 1.088 -0.963 N3 F74 18 F74 N2 N3 N 0 1 N N N -16.739 2.393 6.466 -5.530 1.835 -2.034 N2 F74 19 F74 N1 N4 N 0 1 N N N -14.824 1.703 7.601 -5.531 -0.212 -0.962 N1 F74 20 F74 N7 N5 N 0 1 Y N N -11.328 1.884 6.315 -2.657 -1.759 0.852 N7 F74 21 F74 CL CL1 CL 0 0 N N N -9.696 2.558 4.310 -0.095 -1.704 1.722 CL F74 22 F74 "O3'" O6 O 0 1 N N N -12.889 4.750 0.433 1.470 3.456 1.511 "O3'" F74 23 F74 H2 H2 H 0 1 N N N -8.206 -0.435 2.993 4.193 -2.558 -0.364 H2 F74 24 F74 H3 H3 H 0 1 N N N -10.124 2.385 -0.164 2.897 -0.112 1.176 H3 F74 25 F74 H4 H4 H 0 1 N N N -9.778 2.783 1.553 3.741 1.433 0.910 H4 F74 26 F74 H5 H5 H 0 1 N N N -12.462 2.498 0.158 1.811 2.143 -0.580 H5 F74 27 F74 H6 H6 H 0 1 N N N -10.816 4.642 0.782 1.587 1.571 2.381 H6 F74 28 F74 H7 H7 H 0 1 N N N -10.908 4.578 3.146 -0.695 1.236 2.278 H7 F74 29 F74 H8 H8 H 0 1 N N N -12.430 5.485 2.850 -0.883 2.790 1.405 H8 F74 30 F74 H9 H9 H 0 1 N N N -13.772 3.615 3.126 -0.810 1.758 -0.698 H9 F74 31 F74 H10 H10 H 0 1 N N N -15.141 3.019 4.633 -3.137 1.906 -1.236 H10 F74 32 F74 H11 H11 H 0 1 N N N -17.296 2.119 7.250 -6.459 1.706 -2.283 H11 F74 33 F74 H12 H12 H 0 1 N N N -17.175 2.785 5.656 -5.065 2.644 -2.298 H12 F74 34 F74 H13 H13 H 0 1 N Y N -12.905 5.699 0.471 1.157 3.921 2.299 H13 F74 35 F74 OP3 OP3 O 0 1 N Y N -8.121 1.297 0.276 5.328 -0.874 -2.382 OP3 F74 36 F74 H1 H1 H 0 1 N Y N -7.820 0.847 -0.505 6.163 -1.345 -2.512 H1 F74 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F74 "O3'" "C3'" SING N N 1 F74 OP1 P DOUB N N 2 F74 "C5'" "C4'" SING N N 3 F74 "C5'" "O5'" SING N N 4 F74 "C4'" "C3'" SING N N 5 F74 "C4'" "O4'" SING N N 6 F74 "C3'" "C2'" SING N N 7 F74 "O5'" P SING N N 8 F74 P OP2 SING N N 9 F74 "O4'" "C1'" SING N N 10 F74 "C2'" "C1'" SING N N 11 F74 "C1'" N9 SING N N 12 F74 CL C8 SING N N 13 F74 N9 C8 SING Y N 14 F74 N9 C4 SING Y N 15 F74 C8 N7 DOUB Y N 16 F74 C4 N3 SING N N 17 F74 C4 C5 DOUB Y N 18 F74 N3 C2 SING N N 19 F74 N7 C5 SING Y N 20 F74 N2 C2 SING N N 21 F74 C2 N1 DOUB N N 22 F74 C5 C6 SING N N 23 F74 N1 C6 SING N N 24 F74 C6 O6 DOUB N N 25 F74 OP2 H2 SING N N 26 F74 "C5'" H3 SING N N 27 F74 "C5'" H4 SING N N 28 F74 "C4'" H5 SING N N 29 F74 "C3'" H6 SING N N 30 F74 "C2'" H7 SING N N 31 F74 "C2'" H8 SING N N 32 F74 "C1'" H9 SING N N 33 F74 N3 H10 SING N N 34 F74 N2 H11 SING N N 35 F74 N2 H12 SING N N 36 F74 "O3'" H13 SING N N 37 F74 P OP3 SING N N 38 F74 OP3 H1 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F74 SMILES ACDLabs 12.01 "C1(=O)c2c(NC(=N1)N)n(c(n2)Cl)C3CC(C(COP(O)(O)=O)O3)O" F74 InChI InChI 1.03 "InChI=1S/C10H13ClN5O7P/c11-9-13-6-7(14-10(12)15-8(6)18)16(9)5-1-3(17)4(23-5)2-22-24(19,20)21/h3-5,17H,1-2H2,(H2,19,20,21)(H3,12,14,15,18)/t3-,4+,5+/m0/s1" F74 InChIKey InChI 1.03 GZEVWLMEFXMNBR-VPENINKCSA-N F74 SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2nc(Cl)n([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2N1" F74 SMILES CACTVS 3.385 "NC1=NC(=O)c2nc(Cl)n([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2N1" F74 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1[C@@H]([C@H](O[C@H]1n2c3c(nc2Cl)C(=O)N=C(N3)N)COP(=O)(O)O)O" F74 SMILES "OpenEye OEToolkits" 2.0.6 "C1C(C(OC1n2c3c(nc2Cl)C(=O)N=C(N3)N)COP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F74 "SYSTEMATIC NAME" ACDLabs 12.01 "8-chloro-2'-deoxyguanosine 5'-(dihydrogen phosphate)" F74 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},5~{R})-5-(2-azanyl-8-chloranyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F74 "Create component" 2018-03-08 RCSB F74 "Modify linking type" 2018-03-19 RCSB F74 "Initial release" 2019-03-06 RCSB ##