data_F7O # _chem_comp.id F7O _chem_comp.name "[(2R)-2-[2-(6-aminopurin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 N6 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-07 _chem_comp.pdbx_modified_date 2020-11-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.236 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F7O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BPG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F7O OP1 O1 O 0 1 N N N -0.433 33.354 28.793 -6.277 -0.336 0.701 OP1 F7O 1 F7O P P1 P 0 1 N N N -1.801 32.963 28.330 -5.255 0.193 -0.425 P F7O 2 F7O OP2 O2 O 0 1 N N N -2.899 33.677 27.626 -5.425 1.654 -0.597 OP2 F7O 3 F7O "O3'" O3 O 0 1 N N N -1.485 31.507 27.730 -3.743 -0.121 0.031 "O3'" F7O 4 F7O "C3'" C1 C 0 1 N N N -2.385 30.637 27.051 -3.135 0.479 1.177 "C3'" F7O 5 F7O "C2'" C2 C 0 1 N N R -1.671 29.291 26.745 -1.702 -0.036 1.322 "C2'" F7O 6 F7O "C1'" C3 C 0 1 N N N -0.538 29.579 25.762 -1.712 -1.566 1.367 "C1'" F7O 7 F7O "O1'" O4 O 0 1 N N N -1.181 30.233 24.653 -2.385 -2.072 0.213 "O1'" F7O 8 F7O "N2'" N1 N 0 1 N N N -1.178 28.634 27.984 -0.903 0.413 0.179 "N2'" F7O 9 F7O C2A C4 C 0 1 N N N -1.930 27.732 28.612 0.433 0.537 0.298 C2A F7O 10 F7O O2A O5 O 0 1 N N N -3.061 27.393 28.270 0.975 0.276 1.352 O2A F7O 11 F7O C2B C5 C 0 1 N N N -1.323 27.169 29.865 1.255 1.000 -0.877 C2B F7O 12 F7O N9 N2 N 0 1 Y N N -2.039 25.967 30.230 2.668 1.051 -0.495 N9 F7O 13 F7O C8 C6 C 0 1 Y N N -3.077 25.801 31.020 3.344 2.148 -0.051 C8 F7O 14 F7O N7 N3 N 0 1 Y N N -3.366 24.504 31.016 4.583 1.837 0.198 N7 F7O 15 F7O C5 C7 C 0 1 Y N N -2.505 23.878 30.210 4.780 0.524 -0.071 C5 F7O 16 F7O C4 C8 C 0 1 Y N N -1.704 24.805 29.695 3.553 0.003 -0.513 C4 F7O 17 F7O N3 N4 N 0 1 Y N N -0.737 24.506 28.821 3.478 -1.283 -0.844 N3 F7O 18 F7O C2 C9 C 0 1 Y N N -0.493 23.112 28.348 4.537 -2.059 -0.760 C2 F7O 19 F7O N1 N5 N 0 1 Y N N -1.412 22.162 29.020 5.712 -1.615 -0.350 N1 F7O 20 F7O C6 C10 C 0 1 Y N N -2.374 22.601 29.842 5.881 -0.346 0.006 C6 F7O 21 F7O N6 N6 N 0 1 N N N -3.220 21.750 30.392 7.116 0.110 0.434 N6 F7O 22 F7O OP3 O6 O 0 1 N Y N -2.560 32.509 29.524 -5.561 -0.551 -1.819 OP4 F7O 23 F7O H1 H1 H 0 1 N N N -0.270 34.263 28.569 -6.221 -1.287 0.867 H1 F7O 24 F7O H2 H2 H 0 1 N N N -2.706 31.104 26.108 -3.122 1.562 1.056 H2 F7O 25 F7O H3 H3 H 0 1 N N N -3.264 30.450 27.686 -3.707 0.220 2.069 H3 F7O 26 F7O H4 H4 H 0 1 N N N -2.396 28.625 26.253 -1.268 0.351 2.244 H4 F7O 27 F7O H5 H5 H 0 1 N N N -0.058 28.644 25.437 -0.687 -1.936 1.381 H5 F7O 28 F7O H6 H6 H 0 1 N N N 0.215 30.238 26.219 -2.231 -1.900 2.266 H6 F7O 29 F7O H7 H7 H 0 1 N Y N -0.533 30.446 23.992 -2.429 -3.037 0.175 H7 F7O 30 F7O H8 H8 H 0 1 N N N -0.277 28.871 28.348 -1.337 0.622 -0.663 H8 F7O 31 F7O H9 H9 H 0 1 N N N -0.264 26.929 29.688 1.128 0.303 -1.706 H9 F7O 32 F7O H10 H10 H 0 1 N N N -1.401 27.907 30.677 0.925 1.993 -1.183 H10 F7O 33 F7O H11 H11 H 0 1 N N N -3.596 26.573 31.568 2.915 3.131 0.076 H11 F7O 34 F7O H12 H12 H 0 1 N N N 0.251 22.833 27.616 4.442 -3.099 -1.036 H12 F7O 35 F7O H13 H13 H 0 1 N N N -3.003 20.822 30.091 7.870 -0.499 0.477 H13 F7O 36 F7O H14 H14 H 0 1 N N N -3.146 21.803 31.388 7.227 1.038 0.691 H14 F7O 37 F7O H15 H15 H 0 1 N N N -3.460 32.806 29.459 -6.456 -0.405 -2.155 H15 F7O 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F7O "O1'" "C1'" SING N N 1 F7O "C1'" "C2'" SING N N 2 F7O "C2'" "C3'" SING N N 3 F7O "C2'" "N2'" SING N N 4 F7O "C3'" "O3'" SING N N 5 F7O OP2 P DOUB N N 6 F7O "O3'" P SING N N 7 F7O "N2'" C2A SING N N 8 F7O O2A C2A DOUB N N 9 F7O P OP1 SING N N 10 F7O C2 N3 DOUB Y N 11 F7O C2 N1 SING Y N 12 F7O C2A C2B SING N N 13 F7O N3 C4 SING Y N 14 F7O N1 C6 DOUB Y N 15 F7O C4 C5 DOUB Y N 16 F7O C4 N9 SING Y N 17 F7O C6 C5 SING Y N 18 F7O C6 N6 SING N N 19 F7O C2B N9 SING N N 20 F7O C5 N7 SING Y N 21 F7O N9 C8 SING Y N 22 F7O N7 C8 DOUB Y N 23 F7O P OP3 SING N N 24 F7O OP1 H1 SING N N 25 F7O "C3'" H2 SING N N 26 F7O "C3'" H3 SING N N 27 F7O "C2'" H4 SING N N 28 F7O "C1'" H5 SING N N 29 F7O "C1'" H6 SING N N 30 F7O "O1'" H7 SING N N 31 F7O "N2'" H8 SING N N 32 F7O C2B H9 SING N N 33 F7O C2B H10 SING N N 34 F7O C8 H11 SING N N 35 F7O C2 H12 SING N N 36 F7O N6 H13 SING N N 37 F7O N6 H14 SING N N 38 F7O OP3 H15 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F7O InChI InChI 1.03 "InChI=1S/C10H15N6O6P/c11-9-8-10(13-4-12-9)16(5-14-8)1-7(18)15-6(2-17)3-22-23(19,20)21/h4-6,17H,1-3H2,(H,15,18)(H2,11,12,13)(H2,19,20,21)/t6-/m1/s1" F7O InChIKey InChI 1.03 QTPOROPTULPLNT-ZCFIWIBFSA-N F7O SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(CC(=O)N[C@H](CO)CO[P](O)(O)=O)cnc12" F7O SMILES CACTVS 3.385 "Nc1ncnc2n(CC(=O)N[CH](CO)CO[P](O)(O)=O)cnc12" F7O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CC(=O)N[C@H](CO)COP(=O)(O)O)N" F7O SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CC(=O)NC(CO)COP(=O)(O)O)N" # _pdbx_chem_comp_identifier.comp_id F7O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-2-[2-(6-aminopurin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F7O "Create component" 2020-04-07 PDBJ F7O "Modify internal type" 2020-10-29 PDBJ F7O "Modify linking type" 2020-10-29 PDBJ F7O "Modify atom id" 2020-11-18 PDBJ F7O "Initial release" 2020-11-25 RCSB ##