data_F7X # _chem_comp.id F7X _chem_comp.name "[(2R)-2-[2-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 N6 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-07 _chem_comp.pdbx_modified_date 2020-11-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.236 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F7X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BPG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F7X OP2 O1 O 0 1 N N N 0.548 29.910 23.417 -6.461 -0.349 0.721 OP2 F7X 1 F7X P P1 P 0 1 N N N -1.025 29.643 23.289 -5.446 0.058 -0.461 P F7X 2 F7X OP1 O2 O 0 1 N N N -1.137 30.611 22.158 -5.674 1.470 -0.841 OP1 F7X 3 F7X "O3'" O3 O 0 1 N N N -1.311 28.159 22.797 -3.930 -0.123 0.048 "O3'" F7X 4 F7X "C3'" C1 C 0 1 N N N -2.674 27.770 22.686 -3.363 0.660 1.101 "C3'" F7X 5 F7X "C2'" C2 C 0 1 N N R -2.710 26.272 22.609 -1.912 0.233 1.330 "C2'" F7X 6 F7X "C1'" C3 C 0 1 N N N -1.734 25.791 21.527 -1.859 -1.274 1.593 "C1'" F7X 7 F7X "O1'" O4 O 0 1 N N N -2.070 26.319 20.220 -2.494 -1.967 0.517 "O1'" F7X 8 F7X "N2'" N1 N 0 1 N N N -2.295 25.739 23.908 -1.117 0.549 0.141 "N2'" F7X 9 F7X C2A C4 C 0 1 N N N -3.163 25.173 24.734 0.212 0.746 0.251 C2A F7X 10 F7X O2A O5 O 0 1 N N N -4.361 25.082 24.538 0.749 0.661 1.335 O2A F7X 11 F7X C2B C5 C 0 1 N N N -2.583 24.622 25.995 1.030 1.071 -0.972 C2B F7X 12 F7X N9 N2 N 0 1 Y N N -3.692 24.064 26.803 2.435 1.237 -0.590 N9 F7X 13 F7X C4 C6 C 0 1 Y N N -3.943 22.779 26.819 3.361 0.239 -0.457 C4 F7X 14 F7X N3 N3 N 0 1 N N N -3.327 21.823 26.146 3.328 -1.091 -0.607 N3 F7X 15 F7X C2 C7 C 0 1 N N N -3.738 20.539 26.288 4.400 -1.824 -0.408 C2 F7X 16 F7X N2 N4 N 0 1 N N N -3.102 19.555 25.608 4.318 -3.184 -0.575 N2 F7X 17 F7X N1 N5 N 0 1 N N N -4.815 20.245 27.171 5.591 -1.273 -0.041 N1 F7X 18 F7X C6 C8 C 0 1 N N N -5.445 21.273 27.838 5.702 0.063 0.131 C6 F7X 19 F7X O6 O6 O 0 1 N N N -6.397 20.995 28.593 6.763 0.565 0.460 O6 F7X 20 F7X C5 C9 C 0 1 Y N N -4.985 22.539 27.647 4.555 0.864 -0.080 C5 F7X 21 F7X N7 N6 N 0 1 Y N N -5.373 23.729 28.142 4.306 2.194 -0.003 N7 F7X 22 F7X C8 C10 C 0 1 Y N N -4.572 24.656 27.617 3.060 2.417 -0.307 C8 F7X 23 F7X OP3 O7 O 0 1 N Y N -1.181 30.233 24.653 -5.701 -0.889 -1.737 OP4 F7X 24 F7X H1 H1 H 0 1 N N N 0.815 30.548 22.766 -6.368 -1.263 1.022 H1 F7X 25 F7X H2 H2 H 0 1 N N N -3.116 28.204 21.777 -3.393 1.714 0.826 H2 F7X 26 F7X H3 H3 H 0 1 N N N -3.236 28.115 23.567 -3.935 0.507 2.016 H3 F7X 27 F7X H4 H4 H 0 1 N N N -3.727 25.934 22.362 -1.507 0.766 2.190 H4 F7X 28 F7X H5 H5 H 0 1 N N N -1.764 24.692 21.485 -0.820 -1.593 1.667 H5 F7X 29 F7X H6 H6 H 0 1 N N N -0.719 26.120 21.793 -2.376 -1.498 2.526 H6 F7X 30 F7X H7 H7 H 0 1 N Y N -1.445 26.000 19.579 -2.498 -2.929 0.617 H7 F7X 31 F7X H8 H8 H 0 1 N N N -1.334 25.804 24.178 -1.546 0.617 -0.726 H8 F7X 32 F7X H9 H9 H 0 1 N N N -1.858 23.829 25.757 0.944 0.259 -1.693 H9 F7X 33 F7X H10 H10 H 0 1 N N N -2.079 25.423 26.555 0.664 1.995 -1.419 H10 F7X 34 F7X H11 H11 H 0 1 N N N -2.335 19.778 25.006 3.477 -3.590 -0.836 H11 F7X 35 F7X H12 H12 H 0 1 N N N -3.399 18.605 25.708 5.101 -3.738 -0.431 H12 F7X 36 F7X H13 H13 H 0 1 N N N -5.112 19.300 27.306 6.364 -1.843 0.098 H13 F7X 37 F7X H14 H14 H 0 1 N N N -4.625 25.716 27.817 2.592 3.390 -0.331 H14 F7X 38 F7X H15 H15 H 0 1 N N N -1.333 31.168 24.579 -6.597 -0.832 -2.097 H15 F7X 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F7X "O1'" "C1'" SING N N 1 F7X "C1'" "C2'" SING N N 2 F7X OP1 P DOUB N N 3 F7X "C2'" "C3'" SING N N 4 F7X "C2'" "N2'" SING N N 5 F7X "C3'" "O3'" SING N N 6 F7X "O3'" P SING N N 7 F7X P OP2 SING N N 8 F7X "N2'" C2A SING N N 9 F7X O2A C2A DOUB N N 10 F7X C2A C2B SING N N 11 F7X N2 C2 SING N N 12 F7X C2B N9 SING N N 13 F7X N3 C2 DOUB N N 14 F7X N3 C4 SING N N 15 F7X C2 N1 SING N N 16 F7X N9 C4 SING Y N 17 F7X N9 C8 SING Y N 18 F7X C4 C5 DOUB Y N 19 F7X N1 C6 SING N N 20 F7X C8 N7 DOUB Y N 21 F7X C5 C6 SING N N 22 F7X C5 N7 SING Y N 23 F7X C6 O6 DOUB N N 24 F7X P OP3 SING N N 25 F7X OP2 H1 SING N N 26 F7X "C3'" H2 SING N N 27 F7X "C3'" H3 SING N N 28 F7X "C2'" H4 SING N N 29 F7X "C1'" H5 SING N N 30 F7X "C1'" H6 SING N N 31 F7X "O1'" H7 SING N N 32 F7X "N2'" H8 SING N N 33 F7X C2B H9 SING N N 34 F7X C2B H10 SING N N 35 F7X N2 H11 SING N N 36 F7X N2 H12 SING N N 37 F7X N1 H13 SING N N 38 F7X C8 H14 SING N N 39 F7X OP3 H15 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F7X InChI InChI 1.03 "InChI=1S/C10H15N6O7P/c11-10-14-8-7(9(19)15-10)12-4-16(8)1-6(18)13-5(2-17)3-23-24(20,21)22/h4-5,17H,1-3H2,(H,13,18)(H2,20,21,22)(H3,11,14,15,19)/t5-/m1/s1" F7X InChIKey InChI 1.03 UGPARWCAUBOAFC-RXMQYKEDSA-N F7X SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(CC(=O)N[C@H](CO)CO[P](O)(O)=O)cnc2C(=O)N1" F7X SMILES CACTVS 3.385 "NC1=Nc2n(CC(=O)N[CH](CO)CO[P](O)(O)=O)cnc2C(=O)N1" F7X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1CC(=O)N[C@H](CO)COP(=O)(O)O)N=C(NC2=O)N" F7X SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1CC(=O)NC(CO)COP(=O)(O)O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id F7X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R})-2-[2-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)ethanoylamino]-3-oxidanyl-propyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F7X "Create component" 2020-04-07 PDBJ F7X "Modify internal type" 2020-10-29 PDBJ F7X "Modify linking type" 2020-10-29 PDBJ F7X "Modify atom id" 2020-11-18 PDBJ F7X "Initial release" 2020-11-25 RCSB ##