data_F86 # _chem_comp.id F86 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAD _chem_comp.formula "C12 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Remdesivir, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-14 _chem_comp.pdbx_modified_date 2022-10-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.243 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F86 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BV2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F86 C8 C1 C 0 1 N N N 90.089 93.714 102.212 0.974 -1.667 -1.653 C8 F86 1 F86 C5 C2 C 0 1 Y N N 91.043 92.580 104.194 2.076 -0.661 0.284 C5 F86 2 F86 C6 C3 C 0 1 N N N 93.646 90.983 101.106 -2.671 -0.580 0.546 C6 F86 3 F86 N1 N1 N 0 1 Y N N 90.372 93.279 105.194 2.582 0.513 -0.135 N1 F86 4 F86 C2 C4 C 0 1 N N R 92.527 94.119 102.804 0.467 -2.555 0.603 C2 F86 5 F86 N3 N2 N 0 1 N N N 89.132 94.151 101.727 1.096 -1.946 -2.747 N3 F86 6 F86 C4 C5 C 0 1 N N R 92.877 92.286 101.308 -1.476 -1.272 -0.114 C4 F86 7 F86 O2 O1 O 0 1 N N N 92.236 95.336 102.134 0.919 -3.741 -0.054 O2 F86 8 F86 N2 N3 N 0 1 Y N N 89.857 94.508 105.120 2.171 1.446 -1.098 N2 F86 9 F86 O4 O2 O 0 1 N N N 93.558 90.117 102.223 -3.051 0.557 -0.231 O4 F86 10 F86 N4 N4 N 0 1 Y N N 89.204 94.166 107.454 3.988 2.790 -0.624 N4 F86 11 F86 C7 C6 C 0 1 Y N N 91.404 91.340 104.711 2.879 -1.170 1.256 C7 F86 12 F86 O6 O3 O 0 1 N N N 92.596 88.024 103.361 -5.656 0.699 0.090 O6 F86 13 F86 C1 C7 C 0 1 N N R 91.312 93.155 102.826 0.817 -1.305 -0.235 C1 F86 14 F86 C10 C8 C 0 1 Y N N 90.974 91.189 106.069 3.933 -0.277 1.453 C10 F86 15 F86 C11 C9 C 0 1 Y N N 89.741 92.925 107.450 4.447 1.965 0.303 C11 F86 16 F86 C12 C10 C 0 1 Y N N 89.278 94.874 106.294 2.873 2.527 -1.302 C12 F86 17 F86 C3 C11 C 0 1 N N S 93.634 93.333 102.101 -1.076 -2.533 0.684 C3 F86 18 F86 C9 C12 C 0 1 Y N N 90.358 92.437 106.276 3.737 0.773 0.577 C9 F86 19 F86 N5 N5 N 0 1 N N N 89.647 92.176 108.620 5.605 2.263 0.991 N5 F86 20 F86 O1 O4 O 0 1 N N N 91.691 92.036 102.032 -0.311 -0.419 -0.065 O1 F86 21 F86 O3 O5 O 0 1 N N N 94.420 94.107 101.216 -1.627 -3.704 0.079 O3 F86 22 F86 O5 O6 O 0 1 N N N 93.876 87.784 101.166 -4.078 2.024 1.548 O5 F86 23 F86 P1 P1 P 0 1 N N N 92.931 88.546 102.018 -4.276 1.523 0.169 P1 F86 24 F86 H1 H1 H 0 1 N N N 93.236 90.465 100.226 -3.507 -1.277 0.603 H1 F86 25 F86 H2 H2 H 0 1 N N N 94.705 91.223 100.930 -2.395 -0.259 1.550 H2 F86 26 F86 H3 H3 H 0 1 N N N 92.836 94.317 103.841 0.903 -2.481 1.599 H3 F86 27 F86 H4 H4 H 0 1 N N N 92.634 92.703 100.320 -1.712 -1.533 -1.146 H4 F86 28 F86 H5 H5 H 0 1 N N N 91.546 95.796 102.597 0.725 -4.556 0.429 H5 F86 29 F86 H6 H6 H 0 1 N N N 91.942 90.585 104.157 2.728 -2.101 1.782 H6 F86 30 F86 H7 H7 H 0 1 N N N 93.064 87.211 103.511 -5.851 0.340 -0.786 H7 F86 31 F86 H8 H8 H 0 1 N N N 91.090 90.353 106.743 4.746 -0.385 2.156 H8 F86 32 F86 H9 H9 H 0 1 N N N 88.818 95.851 106.308 2.538 3.232 -2.048 H9 F86 33 F86 H10 H10 H 0 1 N N N 94.263 92.838 102.855 -1.403 -2.448 1.721 H10 F86 34 F86 H11 H11 H 0 1 N N N 89.168 92.707 109.319 6.088 3.081 0.798 H11 F86 35 F86 H12 H12 H 0 1 N N N 89.140 91.334 108.437 5.937 1.653 1.669 H12 F86 36 F86 H13 H13 H 0 1 N N N 94.897 94.765 101.708 -1.407 -4.525 0.540 H13 F86 37 F86 O7 O7 O 0 1 N Y N 91.484 88.827 101.139 -4.334 2.767 -0.851 O7 F86 38 F86 H14 H14 H 0 1 N Y N 91.559 88.443 100.273 -5.050 3.391 -0.669 H14 F86 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F86 C6 C4 SING N N 1 F86 C6 O4 SING N N 2 F86 O5 P1 DOUB N N 3 F86 O3 C3 SING N N 4 F86 C4 O1 SING N N 5 F86 C4 C3 SING N N 6 F86 N3 C8 TRIP N N 7 F86 P1 O4 SING N N 8 F86 P1 O6 SING N N 9 F86 O1 C1 SING N N 10 F86 C3 C2 SING N N 11 F86 O2 C2 SING N N 12 F86 C8 C1 SING N N 13 F86 C2 C1 SING N N 14 F86 C1 C5 SING N N 15 F86 C5 C7 DOUB Y N 16 F86 C5 N1 SING Y N 17 F86 C7 C10 SING Y N 18 F86 N2 N1 SING Y N 19 F86 N2 C12 DOUB Y N 20 F86 N1 C9 SING Y N 21 F86 C10 C9 DOUB Y N 22 F86 C9 C11 SING Y N 23 F86 C12 N4 SING Y N 24 F86 C11 N4 DOUB Y N 25 F86 C11 N5 SING N N 26 F86 C6 H1 SING N N 27 F86 C6 H2 SING N N 28 F86 C2 H3 SING N N 29 F86 C4 H4 SING N N 30 F86 O2 H5 SING N N 31 F86 C7 H6 SING N N 32 F86 O6 H7 SING N N 33 F86 C10 H8 SING N N 34 F86 C12 H9 SING N N 35 F86 C3 H10 SING N N 36 F86 N5 H11 SING N N 37 F86 N5 H12 SING N N 38 F86 O3 H13 SING N N 39 F86 P1 O7 SING N N 40 F86 O7 H14 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F86 SMILES ACDLabs 12.01 "OP(=O)(O)OCC1OC(C#N)(C(O)C1O)c1ccc2c(N)ncnn21" F86 InChI InChI 1.06 "InChI=1S/C12H14N5O7P/c13-4-12(8-2-1-6-11(14)15-5-16-17(6)8)10(19)9(18)7(24-12)3-23-25(20,21)22/h1-2,5,7,9-10,18-19H,3H2,(H2,14,15,16)(H2,20,21,22)/t7-,9-,10-,12+/m1/s1" F86 InChIKey InChI 1.06 ZBHOHJWLOOFLMW-LTGWCKQJSA-N F86 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnn2c1ccc2[C@@]3(O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)C#N" F86 SMILES CACTVS 3.385 "Nc1ncnn2c1ccc2[C]3(O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)C#N" F86 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)[C@]3([C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C#N" F86 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)C3(C(C(C(O3)COP(=O)(O)O)O)O)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier F86 "SYSTEMATIC NAME" ACDLabs 12.01 "{(2R,3S,4R,5R)-5-[(8R)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl dihydrogen phosphate (non-preferred name)" F86 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id F86 _pdbx_chem_comp_synonyms.name "Remdesivir, bound form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F86 "Create component" 2020-04-14 PDBJ F86 "Initial release" 2020-04-22 RCSB F86 "Modify synonyms" 2020-10-05 RCSB F86 "Modify leaving atom flag" 2022-10-05 RCSB #