data_F8O # _chem_comp.id F8O _chem_comp.name "(2~{R},4~{R})-2,4-dimethyloctanal" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code F8O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PQO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal F8O C42 C1 C 0 1 N N N N N N 20.489 12.060 2.047 -2.915 -0.428 -0.336 C42 F8O 1 F8O C43 C2 C 0 1 N N R N N N 20.619 10.854 1.127 -1.535 -0.319 0.259 C43 F8O 2 F8O C44 C3 C 0 1 N N N N N N 19.511 10.790 0.074 -0.913 1.022 -0.136 C44 F8O 3 F8O C45 C4 C 0 1 N N R N N N 18.195 10.194 0.574 0.539 1.073 0.345 C45 F8O 4 F8O C46 C5 C 0 1 N N N N N N 17.308 9.704 -0.552 1.360 0.019 -0.401 C46 F8O 5 F8O C49 C6 C 0 1 N N N N N N 17.143 10.707 -1.693 2.781 -0.015 0.167 C49 F8O 6 F8O C50 C7 C 0 1 N N N N N N 15.739 11.261 -1.870 3.602 -1.069 -0.579 C50 F8O 7 F8O C51 C8 C 0 1 N N N N N N 15.208 11.233 -3.282 5.023 -1.104 -0.011 C51 F8O 8 F8O C52 C9 C 0 1 N N N N N N 21.976 10.895 0.426 -1.628 -0.408 1.784 C52 F8O 9 F8O C53 C10 C 0 1 N N N N N N 18.446 9.093 1.591 1.119 2.461 0.069 C53 F8O 10 F8O O47 O1 O 0 1 N N N N N N 20.192 13.142 1.546 -3.354 0.473 -1.011 O47 F8O 11 F8O H2 H2 H 0 1 N N N N N N 20.571 9.941 1.739 -0.913 -1.132 -0.115 H2 F8O 12 F8O H3 H3 H 0 1 N N N N N N 19.870 10.176 -0.765 -0.940 1.129 -1.221 H3 F8O 13 F8O H4 H4 H 0 1 N N N N N N 19.313 11.813 -0.279 -1.477 1.834 0.323 H4 F8O 14 F8O H5 H5 H 0 1 N N N N N N 17.651 10.998 1.092 0.574 0.870 1.415 H5 F8O 15 F8O H6 H6 H 0 1 N N N N N N 16.313 9.484 -0.138 0.896 -0.959 -0.278 H6 F8O 16 F8O H7 H7 H 0 1 N N N N N N 17.747 8.782 -0.962 1.399 0.272 -1.461 H7 F8O 17 F8O H8 H8 H 0 1 N N N N N N 17.432 10.208 -2.629 3.246 0.963 0.043 H8 F8O 18 F8O H9 H9 H 0 1 N N N N N N 17.821 11.552 -1.504 2.742 -0.268 1.226 H9 F8O 19 F8O H10 H10 H 0 1 N N N N N N 15.741 12.307 -1.528 3.138 -2.047 -0.456 H10 F8O 20 F8O H11 H11 H 0 1 N N N N N N 15.059 10.670 -1.239 3.641 -0.816 -1.639 H11 F8O 21 F8O H12 H12 H 0 1 N N N N N N 14.192 11.653 -3.300 5.488 -0.126 -0.135 H12 F8O 22 F8O H13 H13 H 0 1 N N N N N N 15.864 11.831 -3.932 4.984 -1.356 1.048 H13 F8O 23 F8O H14 H14 H 0 1 N N N N N N 15.182 10.194 -3.643 5.608 -1.854 -0.543 H14 F8O 24 F8O H15 H15 H 0 1 N N N N N N 22.777 10.941 1.179 -2.073 -1.362 2.065 H15 F8O 25 F8O H16 H16 H 0 1 N N N N N N 22.100 9.989 -0.186 -0.629 -0.332 2.214 H16 F8O 26 F8O H17 H17 H 0 1 N N N N N N 22.028 11.784 -0.220 -2.247 0.407 2.158 H17 F8O 27 F8O H18 H18 H 0 1 N N N N N N 19.091 9.476 2.395 0.463 3.220 0.497 H18 F8O 28 F8O H19 H19 H 0 1 N N N N N N 17.487 8.762 2.017 2.108 2.538 0.522 H19 F8O 29 F8O H20 H20 H 0 1 N N N N N N 18.941 8.244 1.097 1.199 2.615 -1.007 H20 F8O 30 F8O OXT OXT O 0 1 N Y N N N N ? ? ? -3.654 -1.527 -0.120 O1 F8O 31 F8O HXT HXT H 0 1 N Y N N N N ? ? ? -4.534 -1.551 -0.522 H1 F8O 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal F8O C51 C50 SING N N 1 F8O C50 C49 SING N N 2 F8O C49 C46 SING N N 3 F8O C46 C45 SING N N 4 F8O C44 C45 SING N N 5 F8O C44 C43 SING N N 6 F8O C52 C43 SING N N 7 F8O C45 C53 SING N N 8 F8O C43 C42 SING N N 9 F8O O47 C42 DOUB N N 10 F8O C43 H2 SING N N 11 F8O C44 H3 SING N N 12 F8O C44 H4 SING N N 13 F8O C45 H5 SING N N 14 F8O C46 H6 SING N N 15 F8O C46 H7 SING N N 16 F8O C49 H8 SING N N 17 F8O C49 H9 SING N N 18 F8O C50 H10 SING N N 19 F8O C50 H11 SING N N 20 F8O C51 H12 SING N N 21 F8O C51 H13 SING N N 22 F8O C51 H14 SING N N 23 F8O C52 H15 SING N N 24 F8O C52 H16 SING N N 25 F8O C52 H17 SING N N 26 F8O C53 H18 SING N N 27 F8O C53 H19 SING N N 28 F8O C53 H20 SING N N 29 F8O C42 OXT SING N N 30 F8O OXT HXT SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor F8O InChI InChI 1.06 "InChI=1S/C10H20O2/c1-4-5-6-8(2)7-9(3)10(11)12/h8-9H,4-7H2,1-3H3,(H,11,12)/t8-,9-/m1/s1" F8O InChIKey InChI 1.06 BBRLCIVWEAHSPK-RKDXNWHRSA-N F8O SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H](C)C[C@@H](C)C(O)=O" F8O SMILES CACTVS 3.385 "CCCC[CH](C)C[CH](C)C(O)=O" F8O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C)C[C@@H](C)C(=O)O" F8O SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(C)CC(C)C(=O)O" # _pdbx_chem_comp_identifier.comp_id F8O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{R})-2,4-dimethyloctanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site F8O "Create component" 2023-07-19 PDBE F8O "Initial release" 2024-05-08 RCSB F8O "Modify leaving atom flag" 2024-07-03 PDBE F8O "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id F8O _pdbx_chem_comp_pcm.modified_residue_id MLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom C42 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom N _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #