data_FD1 # _chem_comp.id FD1 _chem_comp.name "N-ALPHA-(2-NAPHTHYLSULFONYL)-N-(3-AMIDINO-L-PHENYLALANINYL)-D-PIPECOLINIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H28 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.589 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FD1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1K1I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FD1 C65 C65 C 0 1 Y N N -1.946 16.358 17.919 -0.831 -0.092 3.152 C65 FD1 1 FD1 C66 C66 C 0 1 Y N N -2.172 15.750 16.669 -0.037 -1.045 3.757 C66 FD1 2 FD1 C64 C64 C 0 1 Y N N -1.209 15.657 18.908 -0.957 1.164 3.715 C64 FD1 3 FD1 C63 C63 C 0 1 Y N N -0.712 14.370 18.644 -0.295 1.472 4.890 C63 FD1 4 FD1 C62 C62 C 0 1 Y N N -0.951 13.774 17.388 0.496 0.526 5.507 C62 FD1 5 FD1 C61 C61 C 0 1 Y N N -1.685 14.466 16.394 0.628 -0.743 4.945 C61 FD1 6 FD1 C25 C25 C 0 1 N N N -1.939 13.837 15.052 1.475 -1.763 5.603 C25 FD1 7 FD1 N43 N43 N 0 1 N N N -1.530 12.622 14.845 2.136 -1.459 6.773 N43 FD1 8 FD1 N54 N54 N 0 1 N N N -2.559 14.517 14.114 1.597 -2.947 5.075 N54 FD1 9 FD1 C34 C34 C 0 1 N N N -2.496 17.769 18.195 -1.556 -0.420 1.872 C34 FD1 10 FD1 C31 C31 C 0 1 N N S -1.562 18.898 17.730 -0.664 -0.076 0.678 C31 FD1 11 FD1 C35 C35 C 0 1 N N N -0.087 18.668 18.021 -1.316 -0.558 -0.591 C35 FD1 12 FD1 O36 O36 O 0 1 N N N 0.534 18.136 17.100 -0.823 -1.472 -1.217 O36 FD1 13 FD1 N81 N81 N 0 1 N N N 0.501 19.023 19.210 -2.448 0.026 -1.031 N81 FD1 14 FD1 C71 C71 C 0 1 N N R -0.247 19.815 20.232 -2.997 -0.305 -2.353 C71 FD1 15 FD1 C72 C72 C 0 1 N N N 0.653 21.023 20.592 -4.464 -0.729 -2.181 C72 FD1 16 FD1 C74 C74 C 0 1 N N N 2.715 19.571 19.948 -4.616 0.576 -0.054 C74 FD1 17 FD1 C75 C75 C 0 1 N N N 1.778 18.395 19.613 -3.154 1.011 -0.200 C75 FD1 18 FD1 C40 C40 C 0 1 N N N 2.067 20.697 20.695 -5.225 0.375 -1.444 C40 FD1 19 FD1 C91 C91 C 0 1 N N N -0.582 18.988 21.449 -2.211 -1.440 -2.957 C91 FD1 20 FD1 O92 O92 O 0 1 N N N -0.965 19.546 22.522 -0.992 -1.213 -3.472 O92 FD1 21 FD1 O93 O93 O 0 1 N N N -0.501 17.715 21.405 -2.678 -2.554 -2.979 O93 FD1 22 FD1 N29 N29 N 0 1 N N N -1.763 19.227 16.313 -0.477 1.375 0.611 N29 FD1 23 FD1 S12 S12 S 0 1 N N N -2.170 20.831 15.868 1.032 2.004 0.350 S12 FD1 24 FD1 O32 O32 O 0 1 N N N -2.450 20.876 14.461 0.842 3.400 0.167 O32 FD1 25 FD1 O33 O33 O 0 1 N N N -3.081 21.379 16.816 1.872 1.410 1.331 O33 FD1 26 FD1 C2 C2 C 0 1 Y N N -0.652 21.613 16.082 1.598 1.390 -1.200 C2 FD1 27 FD1 C3 C3 C 0 1 Y N N 0.473 21.099 15.400 1.324 2.107 -2.364 C3 FD1 28 FD1 C4 C4 C 0 1 Y N N 1.743 21.734 15.542 1.747 1.660 -3.578 C4 FD1 29 FD1 C9 C9 C 0 1 Y N N 0.682 23.406 17.038 2.750 -0.269 -2.480 C9 FD1 30 FD1 C10 C10 C 0 1 Y N N 1.852 22.900 16.368 2.472 0.459 -3.663 C10 FD1 31 FD1 C1 C1 C 0 1 Y N N -0.560 22.748 16.874 2.302 0.226 -1.243 C1 FD1 32 FD1 C5 C5 C 0 1 Y N N 3.089 23.591 16.551 2.925 -0.033 -4.898 C5 FD1 33 FD1 C6 C6 C 0 1 Y N N 3.156 24.765 17.391 3.625 -1.200 -4.942 C6 FD1 34 FD1 C7 C7 C 0 1 Y N N 1.996 25.238 18.041 3.899 -1.916 -3.779 C7 FD1 35 FD1 C8 C8 C 0 1 Y N N 0.766 24.569 17.866 3.475 -1.470 -2.565 C8 FD1 36 FD1 H661 1H66 H 0 0 N N N -2.740 16.289 15.892 0.061 -2.027 3.317 H661 FD1 37 FD1 H641 1H64 H 0 0 N N N -1.020 16.117 19.892 -1.576 1.908 3.235 H641 FD1 38 FD1 H631 1H63 H 0 0 N N N -0.138 13.832 19.417 -0.398 2.456 5.324 H631 FD1 39 FD1 H621 1H62 H 0 0 N N N -0.562 12.763 17.182 1.012 0.767 6.425 H621 FD1 40 FD1 H431 1H43 H 0 0 N N N -1.913 12.017 15.571 2.691 -2.128 7.204 H431 FD1 41 FD1 H432 2H43 H 0 0 N N N -1.702 12.195 13.935 2.049 -0.576 7.164 H432 FD1 42 FD1 H541 1H54 H 0 0 N N N -2.342 15.198 14.842 1.132 -3.161 4.251 H541 FD1 43 FD1 H341 1H34 H 0 0 N N N -2.750 17.888 19.274 -1.795 -1.483 1.853 H341 FD1 44 FD1 H342 2H34 H 0 0 N N N -3.511 17.890 17.750 -2.477 0.160 1.818 H342 FD1 45 FD1 H311 1H31 H 0 0 N N N -1.860 19.773 18.353 0.304 -0.562 0.796 H311 FD1 46 FD1 H711 1H71 H 0 0 N N N -1.228 20.156 19.827 -2.942 0.565 -3.006 H711 FD1 47 FD1 H721 1H72 H 0 0 N N N 0.295 21.513 21.527 -4.513 -1.652 -1.603 H721 FD1 48 FD1 H722 2H72 H 0 0 N N N 0.495 21.858 19.870 -4.913 -0.888 -3.161 H722 FD1 49 FD1 H741 1H74 H 0 0 N N N 3.203 19.953 19.021 -4.664 -0.358 0.502 H741 FD1 50 FD1 H742 2H74 H 0 0 N N N 3.611 19.205 20.501 -5.173 1.347 0.478 H742 FD1 51 FD1 H751 1H75 H 0 0 N N N 2.193 17.690 18.856 -2.688 1.060 0.783 H751 FD1 52 FD1 H752 2H75 H 0 0 N N N 1.675 17.652 20.438 -3.109 1.990 -0.677 H752 FD1 53 FD1 H401 1H40 H 0 0 N N N 2.293 20.548 21.777 -6.272 0.090 -1.343 H401 FD1 54 FD1 H402 2H40 H 0 0 N N N 2.638 21.624 20.454 -5.154 1.304 -2.009 H402 FD1 55 FD1 H921 1H92 H 0 0 N N N -1.176 19.025 23.288 -0.488 -1.941 -3.860 H921 FD1 56 FD1 H291 1H29 H 0 0 N N N -2.465 18.595 15.929 -1.237 1.967 0.718 H291 FD1 57 FD1 H31 1H3 H 0 1 N N N 0.361 20.207 14.761 0.767 3.030 -2.301 H31 FD1 58 FD1 H41 1H4 H 0 1 N N N 2.627 21.330 15.021 1.527 2.226 -4.471 H41 FD1 59 FD1 H11 1H1 H 0 1 N N N -1.470 23.125 17.371 2.511 -0.316 -0.333 H11 FD1 60 FD1 H51 1H5 H 0 1 N N N 3.994 23.217 16.043 2.720 0.511 -5.808 H51 FD1 61 FD1 H61 1H6 H 0 1 N N N 4.105 25.307 17.538 3.972 -1.576 -5.893 H61 FD1 62 FD1 H71 1H7 H 0 1 N N N 2.051 26.131 18.686 4.455 -2.840 -3.842 H71 FD1 63 FD1 H81 1H8 H 0 1 N N N -0.131 24.956 18.377 3.694 -2.036 -1.672 H81 FD1 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FD1 C65 C66 DOUB Y N 1 FD1 C65 C64 SING Y N 2 FD1 C65 C34 SING N N 3 FD1 C66 C61 SING Y N 4 FD1 C66 H661 SING N N 5 FD1 C64 C63 DOUB Y N 6 FD1 C64 H641 SING N N 7 FD1 C63 C62 SING Y N 8 FD1 C63 H631 SING N N 9 FD1 C62 C61 DOUB Y N 10 FD1 C62 H621 SING N N 11 FD1 C61 C25 SING N N 12 FD1 C25 N43 SING N N 13 FD1 C25 N54 DOUB N E 14 FD1 N43 H431 SING N N 15 FD1 N43 H432 SING N N 16 FD1 N54 H541 SING N N 17 FD1 C34 C31 SING N N 18 FD1 C34 H341 SING N N 19 FD1 C34 H342 SING N N 20 FD1 C31 C35 SING N N 21 FD1 C31 N29 SING N N 22 FD1 C31 H311 SING N N 23 FD1 C35 O36 DOUB N N 24 FD1 C35 N81 SING N N 25 FD1 N81 C71 SING N N 26 FD1 N81 C75 SING N N 27 FD1 C71 C72 SING N N 28 FD1 C71 C91 SING N N 29 FD1 C71 H711 SING N N 30 FD1 C72 C40 SING N N 31 FD1 C72 H721 SING N N 32 FD1 C72 H722 SING N N 33 FD1 C74 C75 SING N N 34 FD1 C74 C40 SING N N 35 FD1 C74 H741 SING N N 36 FD1 C74 H742 SING N N 37 FD1 C75 H751 SING N N 38 FD1 C75 H752 SING N N 39 FD1 C40 H401 SING N N 40 FD1 C40 H402 SING N N 41 FD1 C91 O92 SING N N 42 FD1 C91 O93 DOUB N N 43 FD1 O92 H921 SING N N 44 FD1 N29 S12 SING N N 45 FD1 N29 H291 SING N N 46 FD1 S12 O32 DOUB N N 47 FD1 S12 O33 DOUB N N 48 FD1 S12 C2 SING N N 49 FD1 C2 C3 DOUB Y N 50 FD1 C2 C1 SING Y N 51 FD1 C3 C4 SING Y N 52 FD1 C3 H31 SING N N 53 FD1 C4 C10 DOUB Y N 54 FD1 C4 H41 SING N N 55 FD1 C9 C10 SING Y N 56 FD1 C9 C1 DOUB Y N 57 FD1 C9 C8 SING Y N 58 FD1 C10 C5 SING Y N 59 FD1 C1 H11 SING N N 60 FD1 C5 C6 DOUB Y N 61 FD1 C5 H51 SING N N 62 FD1 C6 C7 SING Y N 63 FD1 C6 H61 SING N N 64 FD1 C7 C8 DOUB Y N 65 FD1 C7 H71 SING N N 66 FD1 C8 H81 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FD1 SMILES ACDLabs 10.04 "O=C(N1C(C(=O)O)CCCC1)C(NS(=O)(=O)c3cc2ccccc2cc3)Cc4cc(C(=[N@H])N)ccc4" FD1 SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1cccc(C[C@H](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N4CCCC[C@@H]4C(O)=O)c1" FD1 SMILES CACTVS 3.341 "NC(=N)c1cccc(C[CH](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N4CCCC[CH]4C(O)=O)c1" FD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\c1cccc(c1)C[C@@H](C(=O)N2CCCC[C@@H]2C(=O)O)NS(=O)(=O)c3ccc4ccccc4c3)/N" FD1 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1cccc(c1)CC(C(=O)N2CCCCC2C(=O)O)NS(=O)(=O)c3ccc4ccccc4c3)N" FD1 InChI InChI 1.03 "InChI=1S/C26H28N4O5S/c27-24(28)20-9-5-6-17(14-20)15-22(25(31)30-13-4-3-10-23(30)26(32)33)29-36(34,35)21-12-11-18-7-1-2-8-19(18)16-21/h1-2,5-9,11-12,14,16,22-23,29H,3-4,10,13,15H2,(H3,27,28)(H,32,33)/t22-,23+/m0/s1" FD1 InChIKey InChI 1.03 GNANSBQAIRJZPA-XZOQPEGZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FD1 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-1-[3-carbamimidoyl-N-(naphthalen-2-ylsulfonyl)-L-phenylalanyl]piperidine-2-carboxylic acid" FD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-1-[(2S)-3-(3-carbamimidoylphenyl)-2-(naphthalen-2-ylsulfonylamino)propanoyl]piperidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FD1 "Create component" 2001-10-19 RCSB FD1 "Modify descriptor" 2011-06-04 RCSB #