data_FDU # _chem_comp.id FDU _chem_comp.name "1-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H11 F N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2'S)-2'-DEOXY-2'-FLUORO-5-ETHYNYLURIDINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-02-12 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 270.214 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FDU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OQM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FDU O01 O01 O 0 1 N N N -51.364 23.568 1.328 -3.955 -2.466 0.684 O01 FDU 1 FDU C03 C03 C 0 1 N N N -50.016 23.858 1.019 -3.774 -1.302 -0.125 C03 FDU 2 FDU C06 C06 C 0 1 N N R -49.976 25.227 0.346 -2.878 -0.303 0.611 C06 FDU 3 FDU O08 O08 O 0 1 N N N -48.741 25.862 0.721 -1.541 -0.829 0.753 O08 FDU 4 FDU C09 C09 C 0 1 N N R -49.972 25.156 -1.181 -2.674 0.976 -0.239 C09 FDU 5 FDU O11 O11 O 0 1 N N N -50.458 26.354 -1.749 -3.732 1.911 -0.016 O11 FDU 6 FDU C13 C13 C 0 1 N N S -48.507 24.937 -1.502 -1.332 1.519 0.308 C13 FDU 7 FDU F15 F15 F 0 1 N N N -48.214 23.613 -1.374 -0.537 2.004 -0.736 F15 FDU 8 FDU C16 C16 C 0 1 N N R -47.836 25.775 -0.406 -0.668 0.293 0.965 C16 FDU 9 FDU N18 N18 N 0 1 N N N -46.531 25.362 0.105 0.633 0.038 0.343 N18 FDU 10 FDU C19 C19 C 0 1 N N N -45.410 25.989 -0.422 0.685 -0.318 -0.950 C19 FDU 11 FDU O20 O20 O 0 1 N N N -45.437 26.831 -1.320 -0.352 -0.420 -1.577 O20 FDU 12 FDU N21 N21 N 0 1 N N N -44.213 25.594 0.132 1.850 -0.565 -1.573 N21 FDU 13 FDU C23 C23 C 0 1 N N N -44.036 24.671 1.134 3.017 -0.460 -0.903 C23 FDU 14 FDU O24 O24 O 0 1 N N N -42.925 24.365 1.573 4.076 -0.682 -1.461 O24 FDU 15 FDU C25 C25 C 0 1 N N N -45.266 24.051 1.655 2.983 -0.072 0.515 C25 FDU 16 FDU C26 C26 C 0 1 N N N -46.434 24.427 1.120 1.768 0.172 1.090 C26 FDU 17 FDU C28 C28 C 0 1 N N N -45.157 23.083 2.694 4.192 0.053 1.271 C28 FDU 18 FDU C29 C29 C 0 1 N N N -45.027 22.273 3.566 5.183 0.156 1.892 C29 FDU 19 FDU H1 H1 H 0 1 N N N -51.417 22.718 1.749 -4.514 -3.143 0.280 H1 FDU 20 FDU H2 H2 H 0 1 N N N -49.616 23.094 0.337 -3.305 -1.584 -1.068 H2 FDU 21 FDU H3 H3 H 0 1 N N N -49.416 23.877 1.941 -4.742 -0.843 -0.323 H3 FDU 22 FDU H4 H4 H 0 1 N N N -50.837 25.824 0.681 -3.299 -0.057 1.585 H4 FDU 23 FDU H5 H5 H 0 1 N N N -50.561 24.288 -1.513 -2.592 0.731 -1.298 H5 FDU 24 FDU H6 H6 H 0 1 N N N -51.376 26.460 -1.529 -3.649 2.728 -0.526 H6 FDU 25 FDU H7 H7 H 0 1 N N N -48.263 25.339 -2.496 -1.509 2.301 1.046 H7 FDU 26 FDU H8 H8 H 0 1 N N N -47.721 26.789 -0.816 -0.540 0.469 2.033 H8 FDU 27 FDU H9 H9 H 0 1 N N N -43.387 26.023 -0.233 1.853 -0.820 -2.509 H9 FDU 28 FDU H10 H10 H 0 1 N N N -47.342 23.980 1.498 1.706 0.463 2.128 H10 FDU 29 FDU H11 H11 H 0 1 N N N -44.912 21.556 4.338 6.070 0.248 2.447 H11 FDU 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FDU O11 C09 SING N N 1 FDU C13 F15 SING N N 2 FDU C13 C09 SING N N 3 FDU C13 C16 SING N N 4 FDU O20 C19 DOUB N N 5 FDU C09 C06 SING N N 6 FDU C19 N18 SING N N 7 FDU C19 N21 SING N N 8 FDU C16 N18 SING N N 9 FDU C16 O08 SING N N 10 FDU N18 C26 SING N N 11 FDU N21 C23 SING N N 12 FDU C06 O08 SING N N 13 FDU C06 C03 SING N N 14 FDU C03 O01 SING N N 15 FDU C26 C25 DOUB N N 16 FDU C23 O24 DOUB N N 17 FDU C23 C25 SING N N 18 FDU C25 C28 SING N N 19 FDU C28 C29 TRIP N N 20 FDU O01 H1 SING N N 21 FDU C03 H2 SING N N 22 FDU C03 H3 SING N N 23 FDU C06 H4 SING N N 24 FDU C09 H5 SING N N 25 FDU O11 H6 SING N N 26 FDU C13 H7 SING N N 27 FDU C16 H8 SING N N 28 FDU N21 H9 SING N N 29 FDU C26 H10 SING N N 30 FDU C29 H11 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FDU SMILES ACDLabs 12.01 "O=C1NC(=O)N(C=C1C#C)C2OC(C(O)C2F)CO" FDU InChI InChI 1.03 "InChI=1S/C11H11FN2O5/c1-2-5-3-14(11(18)13-9(5)17)10-7(12)8(16)6(4-15)19-10/h1,3,6-8,10,15-16H,4H2,(H,13,17,18)/t6-,7+,8-,10-/m1/s1" FDU InChIKey InChI 1.03 YEEGMPUOCRQFRV-IBCQBUCCSA-N FDU SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H]([C@@H](F)[C@@H]1O)N2C=C(C#C)C(=O)NC2=O" FDU SMILES CACTVS 3.370 "OC[CH]1O[CH]([CH](F)[CH]1O)N2C=C(C#C)C(=O)NC2=O" FDU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#CC1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H]([C@H](O2)CO)O)F" FDU SMILES "OpenEye OEToolkits" 1.7.6 "C#CC1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FDU "SYSTEMATIC NAME" ACDLabs 12.01 "1-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione" FDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-ethynyl-1-[(2R,3S,4R,5R)-3-fluoranyl-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FDU "Create component" 2014-02-12 RCSB FDU "Modify synonyms" 2014-02-18 RCSB FDU "Initial release" 2014-08-13 RCSB FDU "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id FDU _pdbx_chem_comp_synonyms.name "(2'S)-2'-DEOXY-2'-FLUORO-5-ETHYNYLURIDINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##