data_FDX # _chem_comp.id FDX _chem_comp.name "(2R,4S)-2-(1,3-dihydroxypropan-2-yl)-4-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3,4-dihydro-2H-pyrrole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H25 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-15 _chem_comp.pdbx_modified_date 2022-05-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 375.441 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FDX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FDX C2 C1 C 0 1 N N S 25.078 40.147 15.727 0.894 0.942 0.599 C2 FDX 1 FDX C3 C2 C 0 1 N N N 23.602 40.042 15.482 1.982 1.788 -0.024 C3 FDX 2 FDX C1 C3 C 0 1 N N N 25.618 39.458 14.466 1.581 -0.422 0.851 C1 FDX 3 FDX C1A C4 C 0 1 N N R 24.894 37.688 17.423 -1.748 -0.090 0.467 C1A FDX 4 FDX C2A C5 C 0 1 N N N 25.615 36.881 18.507 -2.350 0.878 1.507 C2A FDX 5 FDX C31 C6 C 0 1 N N N 22.544 40.753 16.198 1.931 3.266 -0.139 C31 FDX 6 FDX C4A C7 C 0 1 N N N 23.426 37.600 17.861 -2.976 -0.487 -0.394 C4A FDX 7 FDX C5 C8 C 0 1 N N R 24.439 38.727 13.783 2.724 -0.367 -0.190 C5 FDX 8 FDX C5A C9 C 0 1 N N R 23.282 36.299 18.664 -4.103 -0.527 0.669 C5A FDX 9 FDX C6 C10 C 0 1 N N S 24.201 39.114 12.304 3.990 -1.013 0.377 C6 FDX 10 FDX C61 C11 C 0 1 N N N 24.687 38.010 11.360 3.704 -2.475 0.728 C61 FDX 11 FDX C6A C12 C 0 1 N N N 22.449 36.526 19.907 -5.445 -0.313 0.018 C6A FDX 12 FDX C7 C13 C 0 1 N N N 22.740 39.471 11.946 5.106 -0.949 -0.668 C7 FDX 13 FDX C8A C14 C 0 1 N N N 20.674 35.570 21.289 -5.425 -2.654 -0.657 C8A FDX 14 FDX C9A C15 C 0 1 N N N 22.550 34.133 20.563 -7.366 -1.127 -1.241 C9A FDX 15 FDX N3A N1 N 0 1 N N N 24.659 35.843 18.984 -3.793 0.588 1.589 N3A FDX 16 FDX N4 N2 N 0 1 N N N 23.303 39.251 14.542 2.947 1.067 -0.437 N4 FDX 17 FDX N7A N3 N 0 1 N N N 21.931 35.462 20.547 -6.061 -1.335 -0.609 N7A FDX 18 FDX O31 O1 O 0 1 N N N 22.349 40.523 17.417 2.902 3.923 -0.803 O31 FDX 19 FDX O32 O2 O 0 1 N N N 21.854 41.571 15.547 1.015 3.883 0.364 O32 FDX 20 FDX O62 O3 O 0 1 N N N 24.033 38.071 10.075 4.849 -3.045 1.364 O62 FDX 21 FDX O6A O4 O 0 1 N N N 22.261 37.672 20.305 -5.971 0.779 0.058 O6A FDX 22 FDX O7 O5 O 0 1 N N N 22.660 40.904 11.962 4.699 -1.651 -1.844 O7 FDX 23 FDX S21 S1 S 0 1 N N N 25.547 39.345 17.253 -0.500 0.752 -0.546 S21 FDX 24 FDX H1 H1 H 0 1 N N N 25.407 41.195 15.778 0.559 1.382 1.539 H1 FDX 25 FDX H2 H2 H 0 1 N N N 26.398 38.733 14.741 1.976 -0.482 1.865 H2 FDX 26 FDX H3 H3 H 0 1 N N N 26.040 40.209 13.781 0.901 -1.248 0.647 H3 FDX 27 FDX H4 H4 H 0 1 N N N 25.020 37.195 16.448 -1.321 -0.965 0.957 H4 FDX 28 FDX H5 H5 H 0 1 N N N 26.513 36.404 18.088 -1.883 0.716 2.478 H5 FDX 29 FDX H6 H6 H 0 1 N N N 25.904 37.540 19.339 -2.197 1.909 1.186 H6 FDX 30 FDX H7 H7 H 0 1 N N N 23.166 38.464 18.490 -3.181 0.268 -1.153 H7 FDX 31 FDX H8 H8 H 0 1 N N N 22.768 37.576 16.980 -2.833 -1.467 -0.849 H8 FDX 32 FDX H9 H9 H 0 1 N N N 24.540 37.637 13.890 2.422 -0.868 -1.110 H9 FDX 33 FDX H10 H10 H 0 1 N N N 22.786 35.547 18.033 -4.086 -1.476 1.204 H10 FDX 34 FDX H11 H11 H 0 1 N N N 24.810 40.007 12.102 4.301 -0.478 1.274 H11 FDX 35 FDX H12 H12 H 0 1 N N N 24.478 37.033 11.819 2.850 -2.525 1.404 H12 FDX 36 FDX H13 H13 H 0 1 N N N 25.771 38.121 11.212 3.479 -3.030 -0.183 H13 FDX 37 FDX H14 H14 H 0 1 N N N 22.352 39.332 12.966 5.310 0.092 -0.918 H14 FDX 38 FDX H16 H16 H 0 1 N N N 20.426 34.596 21.735 -5.734 -3.238 0.209 H16 FDX 39 FDX H17 H17 H 0 1 N N N 20.782 36.321 22.085 -5.727 -3.169 -1.569 H17 FDX 40 FDX H18 H18 H 0 1 N N N 19.869 35.875 20.604 -4.342 -2.536 -0.648 H18 FDX 41 FDX H19 H19 H 0 1 N N N 21.928 33.445 21.155 -7.222 -0.818 -2.276 H19 FDX 42 FDX H20 H20 H 0 1 N N N 22.636 33.756 19.533 -7.935 -2.056 -1.214 H20 FDX 43 FDX H21 H21 H 0 1 N N N 23.551 34.200 21.013 -7.911 -0.351 -0.703 H21 FDX 44 FDX H22 H22 H 0 1 N N N 24.844 34.975 18.523 -4.063 0.362 2.535 H22 FDX 45 FDX H24 H24 H 0 1 N N N 21.625 41.054 17.728 2.826 4.886 -0.851 H24 FDX 46 FDX H25 H25 H 0 1 N N N 24.360 37.373 9.519 4.739 -3.972 1.615 H25 FDX 47 FDX H26 H26 H 0 1 N N N 21.775 41.175 11.747 4.501 -2.586 -1.696 H26 FDX 48 FDX O1 O6 O 0 1 N Y N 21.555 38.968 11.279 6.289 -1.552 -0.139 O1 FDX 49 FDX H15 H15 H 0 1 N Y N 21.583 38.019 11.255 7.040 -1.547 -0.748 H15 FDX 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FDX O62 C61 SING N N 1 FDX C61 C6 SING N N 2 FDX C7 O7 SING N N 3 FDX C7 C6 SING N N 4 FDX C6 C5 SING N N 5 FDX C5 C1 SING N N 6 FDX C5 N4 SING N N 7 FDX C1 C2 SING N N 8 FDX N4 C3 DOUB N N 9 FDX C3 C2 SING N N 10 FDX C3 C31 SING N N 11 FDX O32 C31 DOUB N N 12 FDX C2 S21 SING N N 13 FDX C31 O31 SING N N 14 FDX S21 C1A SING N N 15 FDX C1A C4A SING N N 16 FDX C1A C2A SING N N 17 FDX C4A C5A SING N N 18 FDX C2A N3A SING N N 19 FDX C5A N3A SING N N 20 FDX C5A C6A SING N N 21 FDX C6A O6A DOUB N N 22 FDX C6A N7A SING N N 23 FDX N7A C9A SING N N 24 FDX N7A C8A SING N N 25 FDX C2 H1 SING N N 26 FDX C1 H2 SING N N 27 FDX C1 H3 SING N N 28 FDX C1A H4 SING N N 29 FDX C2A H5 SING N N 30 FDX C2A H6 SING N N 31 FDX C4A H7 SING N N 32 FDX C4A H8 SING N N 33 FDX C5 H9 SING N N 34 FDX C5A H10 SING N N 35 FDX C6 H11 SING N N 36 FDX C61 H12 SING N N 37 FDX C61 H13 SING N N 38 FDX C7 H14 SING N N 39 FDX C8A H16 SING N N 40 FDX C8A H17 SING N N 41 FDX C8A H18 SING N N 42 FDX C9A H19 SING N N 43 FDX C9A H20 SING N N 44 FDX C9A H21 SING N N 45 FDX N3A H22 SING N N 46 FDX O31 H24 SING N N 47 FDX O62 H25 SING N N 48 FDX O7 H26 SING N N 49 FDX C7 O1 SING N N 50 FDX O1 H15 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FDX SMILES ACDLabs 12.01 "CN(C)C(=O)C1CC(SC2CC(N=C2C(=O)O)C(CO)C(O)O)CN1" FDX InChI InChI 1.03 "InChI=1S/C15H25N3O6S/c1-18(2)13(20)10-3-7(5-16-10)25-11-4-9(8(6-19)14(21)22)17-12(11)15(23)24/h7-11,14,16,19,21-22H,3-6H2,1-2H3,(H,23,24)/t7-,8-,9-,10-,11+/m1/s1" FDX InChIKey InChI 1.03 XKDKVNYTYXSQPL-ILAIQSSSSA-N FDX SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=O)[C@H]1C[C@H](CN1)S[C@H]2C[C@@H](N=C2C(O)=O)[C@@H](CO)C(O)O" FDX SMILES CACTVS 3.385 "CN(C)C(=O)[CH]1C[CH](CN1)S[CH]2C[CH](N=C2C(O)=O)[CH](CO)C(O)O" FDX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)[C@H]1C[C@H](CN1)S[C@H]2C[C@@H](N=C2C(=O)O)[C@@H](CO)C(O)O" FDX SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C1CC(CN1)SC2CC(N=C2C(=O)O)C(CO)C(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FDX "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4S)-4-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S)-1,1,3-trihydroxypropan-2-yl]-3,4-dihydro-2H-pyrrole-5-carboxylic acid" FDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S})-4-[(3~{R},5~{R})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-2-[(2~{S})-1,1,3-tris(oxidanyl)propan-2-yl]-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FDX "Create component" 2021-12-15 RCSB FDX "Initial release" 2022-05-18 RCSB ##