data_FJF # _chem_comp.id FJF _chem_comp.name "5-[(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-05-20 _chem_comp.pdbx_modified_date 2020-11-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.201 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7C1Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FJF O01 O1 O 0 1 N N N 11.352 -7.294 47.166 -4.839 0.524 -0.391 O01 FJF 1 FJF C02 C1 C 0 1 N N N 10.381 -7.983 46.903 -3.675 0.289 -0.127 C02 FJF 2 FJF N03 N1 N 0 1 N N N 9.061 -7.399 46.690 -3.375 -0.422 0.975 N03 FJF 3 FJF C04 C2 C 0 1 N N N 7.944 -8.212 46.352 -2.073 -0.699 1.292 C04 FJF 4 FJF C05 C3 C 0 1 N N N 8.095 -9.658 46.227 -1.080 -0.254 0.493 C05 FJF 5 FJF C06 C4 C 0 1 N N N 9.429 -10.233 46.433 -1.410 0.493 -0.664 C06 FJF 6 FJF O07 O2 O 0 1 N N N 9.594 -11.427 46.330 -0.532 0.905 -1.401 O07 FJF 7 FJF N08 N2 N 0 1 N N N 10.530 -9.410 46.770 -2.706 0.741 -0.945 N08 FJF 8 FJF C09 C5 C 0 1 N N S 6.924 -10.558 45.874 0.359 -0.548 0.827 C09 FJF 9 FJF O10 O3 O 0 1 N N N 6.334 -10.126 44.829 1.117 0.674 0.840 O10 FJF 10 FJF C11 C6 C 0 1 N N R 5.006 -11.031 44.896 2.440 0.354 0.358 C11 FJF 11 FJF C12 C7 C 0 1 N N N 4.026 -10.620 43.797 3.142 1.610 -0.163 C12 FJF 12 FJF O13 O4 O 0 1 N N N 4.696 -10.588 42.543 3.388 2.504 0.925 O13 FJF 13 FJF C14 C8 C 0 1 N N S 4.546 -10.851 46.084 2.172 -0.641 -0.800 C14 FJF 14 FJF O15 O5 O 0 1 N N N 3.913 -12.122 46.637 3.305 -1.485 -1.020 O15 FJF 15 FJF C16 C9 C 0 1 N N R 5.760 -10.472 46.920 0.974 -1.456 -0.256 C16 FJF 16 FJF O17 O6 O 0 1 N N N 5.923 -11.324 47.983 1.423 -2.685 0.318 O17 FJF 17 FJF H1 H1 H 0 1 N N N 6.979 -7.757 46.187 -1.840 -1.270 2.179 H1 FJF 18 FJF H3 H3 H 0 1 N N N 11.427 -9.826 46.918 -2.940 1.252 -1.735 H3 FJF 19 FJF H4 H4 H 0 1 N N N 7.264 -11.601 45.795 0.422 -1.036 1.799 H4 FJF 20 FJF H5 H5 H 0 1 N N N 5.307 -12.075 44.722 3.031 -0.119 1.142 H5 FJF 21 FJF H6 H6 H 0 1 N N N 3.623 -9.621 44.022 4.089 1.332 -0.626 H6 FJF 22 FJF H7 H7 H 0 1 N N N 3.201 -11.347 43.752 2.507 2.101 -0.901 H7 FJF 23 FJF H8 H8 H 0 1 N N N 4.084 -10.332 41.863 3.831 3.324 0.667 H8 FJF 24 FJF H9 H9 H 0 1 N N N 3.810 -10.035 46.133 1.901 -0.112 -1.713 H9 FJF 25 FJF H10 H10 H 0 1 N N N 3.584 -11.957 47.513 4.106 -1.008 -1.275 H10 FJF 26 FJF H11 H11 H 0 1 N N N 5.661 -9.428 47.252 0.251 -1.647 -1.049 H11 FJF 27 FJF H12 H12 H 0 1 N N N 5.191 -11.229 48.581 1.819 -3.295 -0.319 H12 FJF 28 FJF H13 H13 H 0 1 N N N 8.940 -6.411 46.783 -4.088 -0.742 1.549 H13 FJF 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FJF O13 C12 SING N N 1 FJF C12 C11 SING N N 2 FJF O10 C11 SING N N 3 FJF O10 C09 SING N N 4 FJF C11 C14 SING N N 5 FJF C09 C05 SING N N 6 FJF C09 C16 SING N N 7 FJF C14 O15 SING N N 8 FJF C14 C16 SING N N 9 FJF C05 C04 DOUB N N 10 FJF C05 C06 SING N N 11 FJF O07 C06 DOUB N N 12 FJF C04 N03 SING N N 13 FJF C06 N08 SING N N 14 FJF N03 C02 SING N N 15 FJF N08 C02 SING N N 16 FJF C02 O01 DOUB N N 17 FJF C16 O17 SING N N 18 FJF C04 H1 SING N N 19 FJF N08 H3 SING N N 20 FJF C09 H4 SING N N 21 FJF C11 H5 SING N N 22 FJF C12 H6 SING N N 23 FJF C12 H7 SING N N 24 FJF O13 H8 SING N N 25 FJF C14 H9 SING N N 26 FJF O15 H10 SING N N 27 FJF C16 H11 SING N N 28 FJF O17 H12 SING N N 29 FJF N03 H13 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FJF InChI InChI 1.03 "InChI=1S/C9H12N2O6/c12-2-4-5(13)6(14)7(17-4)3-1-10-9(16)11-8(3)15/h1,4-7,12-14H,2H2,(H2,10,11,15,16)/t4-,5-,6-,7+/m1/s1" FJF InChIKey InChI 1.03 PTJWIQPHWPFNBW-GBNDHIKLSA-N FJF SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)C2=CNC(=O)NC2=O" FJF SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)C2=CNC(=O)NC2=O" FJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O" FJF SMILES "OpenEye OEToolkits" 2.0.7 "C1=C(C(=O)NC(=O)N1)C2C(C(C(O2)CO)O)O" # _pdbx_chem_comp_identifier.comp_id FJF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FJF "Create component" 2020-05-20 PDBJ FJF "Initial release" 2020-11-18 RCSB ##