data_FN5 # _chem_comp.id FN5 _chem_comp.name "CMP-3F(a)-Neu5Ac" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H30 F N4 O14 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-06-15 _chem_comp.pdbx_modified_date 2012-08-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.432 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FN5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3S44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FN5 P P P 0 1 N N N 11.462 7.515 -7.550 -0.289 -0.971 1.320 P FN5 1 FN5 N1 N1 N 0 1 N N N 15.512 10.414 -5.979 5.797 0.581 -0.666 N1 FN5 2 FN5 C2 C2 C 0 1 N N N 16.714 11.118 -5.940 5.797 0.877 0.646 C2 FN5 3 FN5 O2 O2 O 0 1 N N N 17.346 11.330 -4.885 5.099 0.229 1.408 O2 FN5 4 FN5 N3 N3 N 0 1 N N N 17.256 11.628 -7.075 6.548 1.866 1.128 N3 FN5 5 FN5 C4 C4 C 0 1 N N N 16.623 11.413 -8.237 7.317 2.587 0.321 C4 FN5 6 FN5 N4 N4 N 0 1 N N N 17.167 11.921 -9.364 8.089 3.606 0.830 N4 FN5 7 FN5 C5 C5 C 0 1 N N N 15.432 10.711 -8.315 7.339 2.303 -1.059 C5 FN5 8 FN5 C6 C6 C 0 1 N N N 14.881 10.177 -7.152 6.574 1.290 -1.533 C6 FN5 9 FN5 "C1'" "C1'" C 0 1 N N R 15.003 9.805 -4.746 4.961 -0.513 -1.166 "C1'" FN5 10 FN5 O2P O2P O 0 1 N N N 12.065 6.187 -7.985 -1.293 0.223 0.920 O2P FN5 11 FN5 "C2'" "C2'" C 0 1 N N R 13.622 10.280 -4.351 5.439 -1.872 -0.593 "C2'" FN5 12 FN5 "O2'" "O2'" O 0 1 N N N 13.713 11.406 -3.466 6.478 -2.428 -1.401 "O2'" FN5 13 FN5 O1P O1P O 0 1 N N N 9.944 7.498 -7.419 -1.083 -2.371 1.289 O1P FN5 14 FN5 "C3'" "C3'" C 0 1 N N S 12.970 9.065 -3.737 4.154 -2.730 -0.677 "C3'" FN5 15 FN5 "O3'" "O3'" O 0 1 N N N 13.251 9.088 -2.348 4.171 -3.542 -1.853 "O3'" FN5 16 FN5 O3P O3P O 0 1 N N N 11.783 8.566 -8.570 0.241 -0.734 2.681 O3P FN5 17 FN5 "C4'" "C4'" C 0 1 N N R 13.713 7.879 -4.348 3.013 -1.696 -0.752 "C4'" FN5 18 FN5 "O4'" "O4'" O 0 1 N N N 14.830 8.413 -5.098 3.612 -0.392 -0.665 "O4'" FN5 19 FN5 "C5'" "C5'" C 0 1 N N N 12.814 7.068 -5.267 2.043 -1.906 0.412 "C5'" FN5 20 FN5 "O5'" "O5'" O 0 1 N N N 12.066 7.946 -6.122 0.930 -1.022 0.270 "O5'" FN5 21 FN5 HN4 HN4 H 0 1 N N N 18.020 12.441 -9.317 8.072 3.799 1.780 HN4 FN5 22 FN5 HN4A HN4A H 0 0 N N N 16.717 11.777 -10.245 8.649 4.131 0.238 HN4A FN5 23 FN5 H5 H5 H 0 1 N N N 14.936 10.579 -9.265 7.959 2.880 -1.729 H5 FN5 24 FN5 H6 H6 H 0 1 N N N 13.975 9.590 -7.186 6.574 1.052 -2.586 H6 FN5 25 FN5 "H1'" "H1'" H 0 1 N N N 15.691 10.039 -3.920 4.967 -0.533 -2.256 "H1'" FN5 26 FN5 C10 C10 C 0 1 N N S 12.802 6.102 -9.207 -2.419 0.593 1.717 C10 FN5 27 FN5 "H2'" "H2'" H 0 1 N N N 13.020 10.650 -5.194 5.768 -1.763 0.441 "H2'" FN5 28 FN5 "HO2'" "HO2'" H 0 0 N N N 12.839 11.693 -3.227 6.811 -3.279 -1.083 "HO2'" FN5 29 FN5 HO1P HO1P H 0 0 N N N 9.568 8.145 -8.004 -1.459 -2.592 0.426 HO1P FN5 30 FN5 "H3'" "H3'" H 0 1 N N N 11.884 9.022 -3.905 4.050 -3.351 0.213 "H3'" FN5 31 FN5 "HO3'" "HO3'" H 0 0 N N N 12.853 8.333 -1.931 4.904 -4.172 -1.885 "HO3'" FN5 32 FN5 "H4'" "H4'" H 0 1 N N N 14.052 7.203 -3.549 2.483 -1.798 -1.699 "H4'" FN5 33 FN5 "H5'" "H5'" H 0 1 N N N 13.433 6.400 -5.884 1.691 -2.937 0.410 "H5'" FN5 34 FN5 "H5'A" "H5'A" H 0 0 N N N 12.117 6.471 -4.660 2.554 -1.699 1.352 "H5'A" FN5 35 FN5 O9 O9 O 0 1 N N N 11.781 4.950 -9.207 -3.563 -0.157 1.304 O9 FN5 36 FN5 C11 C11 C 0 1 N N R 12.269 3.489 -9.207 -3.915 0.026 -0.070 C11 FN5 37 FN5 C12 C12 C 0 1 N N R 13.778 3.181 -9.207 -4.255 1.498 -0.317 C12 FN5 38 FN5 C13 C13 C 0 1 N N R 14.799 4.334 -9.207 -3.056 2.365 0.078 C13 FN5 39 FN5 C14 C14 C 0 1 N N R 14.311 5.794 -9.207 -2.700 2.088 1.542 C14 FN5 40 FN5 F1 F1 F 0 1 N N N 14.930 6.332 -10.452 -3.770 2.462 2.362 F1 FN5 41 FN5 O10 O10 O 0 1 N N N 15.335 4.121 -10.516 -3.391 3.745 -0.080 O10 FN5 42 FN5 N41 N41 N 0 1 N N N 13.172 2.276 -8.118 -4.559 1.698 -1.736 N41 FN5 43 FN5 C15 C15 C 0 1 N N N 13.383 1.047 -9.022 -5.346 2.723 -2.118 C15 FN5 44 FN5 O11 O11 O 0 1 N N N 13.841 0.865 -10.138 -5.804 3.479 -1.288 O11 FN5 45 FN5 C16 C16 C 0 1 N N N 12.778 0.142 -7.932 -5.658 2.930 -3.578 C16 FN5 46 FN5 C17 C17 C 0 1 N N R 11.929 3.036 -10.639 -5.129 -0.842 -0.405 C17 FN5 47 FN5 C18 C18 C 0 1 N N R 10.990 1.954 -10.074 -4.832 -2.298 -0.039 C18 FN5 48 FN5 C19 C19 C 0 1 N N N 10.418 1.236 -11.311 -6.046 -3.166 -0.375 C19 FN5 49 FN5 O12 O12 O 0 1 N N N 9.658 0.375 -10.460 -5.814 -4.503 0.073 O12 FN5 50 FN5 O13 O13 O 0 1 N N N 12.178 1.167 -10.191 -3.700 -2.754 -0.783 O13 FN5 51 FN5 O14 O14 O 0 1 N N N 10.741 3.823 -10.522 -6.261 -0.386 0.339 O14 FN5 52 FN5 H14 H14 H 0 1 N N N 12.977 6.885 -9.960 -2.207 0.384 2.766 H14 FN5 53 FN5 H15 H15 H 0 1 N N N 11.837 3.045 -8.298 -3.075 -0.264 -0.701 H15 FN5 54 FN5 H16 H16 H 0 1 N N N 14.511 2.808 -9.937 -5.121 1.777 0.285 H16 FN5 55 FN5 H17 H17 H 0 1 N N N 15.405 4.283 -8.291 -2.204 2.120 -0.557 H17 FN5 56 FN5 H18 H18 H 0 1 N N N 14.597 6.241 -8.243 -1.813 2.660 1.816 H18 FN5 57 FN5 H19 H19 H 0 1 N N N 16.007 4.769 -10.693 -2.676 4.352 0.153 H19 FN5 58 FN5 H20 H20 H 0 1 N N N 12.797 2.425 -7.203 -4.193 1.094 -2.400 H20 FN5 59 FN5 H21 H21 H 0 1 N N N 12.777 -0.902 -8.280 -6.165 2.048 -3.970 H21 FN5 60 FN5 H22 H22 H 0 1 N N N 13.379 0.222 -7.014 -6.304 3.800 -3.692 H22 FN5 61 FN5 H23 H23 H 0 1 N N N 11.746 0.460 -7.723 -4.731 3.090 -4.128 H23 FN5 62 FN5 H24 H24 H 0 1 N N N 12.656 2.951 -11.460 -5.343 -0.772 -1.472 H24 FN5 63 FN5 H25 H25 H 0 1 N N N 10.288 2.160 -9.252 -4.618 -2.369 1.027 H25 FN5 64 FN5 H26 H26 H 0 1 N N N 9.848 1.855 -12.020 -6.929 -2.765 0.123 H26 FN5 65 FN5 H27 H27 H 0 1 N N N 11.146 0.751 -11.978 -6.206 -3.167 -1.453 H27 FN5 66 FN5 H28 H28 H 0 1 N N N 9.157 -0.233 -10.990 -6.545 -5.111 -0.107 H28 FN5 67 FN5 H29 H29 H 0 1 N N N 12.935 1.703 -9.984 -3.820 -2.720 -1.742 H29 FN5 68 FN5 H30 H30 H 0 1 N N N 10.239 3.761 -11.326 -6.141 -0.421 1.298 H30 FN5 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FN5 P O1P SING N N 1 FN5 P "O5'" SING N N 2 FN5 N1 C2 SING N N 3 FN5 N1 "C1'" SING N N 4 FN5 C2 O2 DOUB N N 5 FN5 N3 C2 SING N N 6 FN5 C4 N3 DOUB N N 7 FN5 N4 C4 SING N N 8 FN5 N4 HN4 SING N N 9 FN5 N4 HN4A SING N N 10 FN5 C5 C4 SING N N 11 FN5 C5 C6 DOUB N N 12 FN5 C5 H5 SING N N 13 FN5 C6 N1 SING N N 14 FN5 C6 H6 SING N N 15 FN5 "C1'" "C2'" SING N N 16 FN5 "C1'" "H1'" SING N N 17 FN5 O2P P SING N N 18 FN5 O2P C10 SING N N 19 FN5 "C2'" "C3'" SING N N 20 FN5 "C2'" "O2'" SING N N 21 FN5 "C2'" "H2'" SING N N 22 FN5 "O2'" "HO2'" SING N N 23 FN5 O1P HO1P SING N N 24 FN5 "C3'" "O3'" SING N N 25 FN5 "C3'" "H3'" SING N N 26 FN5 "O3'" "HO3'" SING N N 27 FN5 O3P P DOUB N N 28 FN5 "C4'" "C3'" SING N N 29 FN5 "C4'" "H4'" SING N N 30 FN5 "O4'" "C1'" SING N N 31 FN5 "O4'" "C4'" SING N N 32 FN5 "C5'" "C4'" SING N N 33 FN5 "C5'" "H5'" SING N N 34 FN5 "C5'" "H5'A" SING N N 35 FN5 "O5'" "C5'" SING N N 36 FN5 C10 O9 SING N N 37 FN5 C10 C14 SING N N 38 FN5 O9 C11 SING N N 39 FN5 C11 C12 SING N N 40 FN5 C12 C13 SING N N 41 FN5 C13 C14 SING N N 42 FN5 C14 F1 SING N N 43 FN5 C13 O10 SING N N 44 FN5 C12 N41 SING N N 45 FN5 N41 C15 SING N N 46 FN5 C15 O11 DOUB N N 47 FN5 C15 C16 SING N N 48 FN5 C11 C17 SING N N 49 FN5 C17 C18 SING N N 50 FN5 C18 C19 SING N N 51 FN5 C19 O12 SING N N 52 FN5 C18 O13 SING N N 53 FN5 C17 O14 SING N N 54 FN5 C10 H14 SING N N 55 FN5 C11 H15 SING N N 56 FN5 C12 H16 SING N N 57 FN5 C13 H17 SING N N 58 FN5 C14 H18 SING N N 59 FN5 O10 H19 SING N N 60 FN5 N41 H20 SING N N 61 FN5 C16 H21 SING N N 62 FN5 C16 H22 SING N N 63 FN5 C16 H23 SING N N 64 FN5 C17 H24 SING N N 65 FN5 C18 H25 SING N N 66 FN5 C19 H26 SING N N 67 FN5 C19 H27 SING N N 68 FN5 O12 H28 SING N N 69 FN5 O13 H29 SING N N 70 FN5 O14 H30 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FN5 SMILES ACDLabs 12.01 "O=C1N=C(N)C=CN1C2OC(C(O)C2O)COP(=O)(O)OC3OC(C(NC(=O)C)C(O)C3F)C(O)C(O)CO" FN5 InChI InChI 1.03 ;InChI=1S/C19H30FN4O14P/c1-6(26)22-11-14(30)10(20)18(37-16(11)12(28)7(27)4-25)38-39(33,34)35-5-8-13(29)15(31)17(36-8)24-3-2-9(21)23-19(24)32/h2-3,7-8,10-18,25,27-31H,4-5H2,1H3,(H,22,26)(H,33,34)(H2,21,23,32)/t7-,8-,10-,11-,12-,13-,14+,15-,16-,17-,18+/m1/s1 ; FN5 InChIKey InChI 1.03 DLSXHRIQCIXYOE-DOSPZCANSA-N FN5 SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@@H](O[C@H]1[C@H](O)[C@H](O)CO)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=NC3=O)N" FN5 SMILES CACTVS 3.370 "CC(=O)N[CH]1[CH](O)[CH](F)[CH](O[CH]1[CH](O)[CH](O)CO)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=NC3=O)N" FN5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC(=O)N[C@@H]1[C@H]([C@H]([C@@H](O[C@H]1[C@@H]([C@@H](CO)O)O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O)F)O" FN5 SMILES "OpenEye OEToolkits" 1.7.2 "CC(=O)NC1C(C(C(OC1C(C(CO)O)O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=NC3=O)N)O)O)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FN5 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3R,4R,5R,6R)-5-(acetylamino)-3-fluoro-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-phosphate (non-preferred name)" FN5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2S,3R,4R,5R,6R)-5-acetamido-3-fluoranyl-4-oxidanyl-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxan-2-yl] [(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FN5 "Create component" 2011-06-15 RCSB #