data_FNO # _chem_comp.id FNO _chem_comp.name "2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms shikonin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-11 _chem_comp.pdbx_modified_date 2021-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FNO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CA8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FNO C10 C1 C 0 1 N N N -22.623 -3.176 -29.331 0.310 -0.821 0.306 C10 FNO 1 FNO C13 C2 C 0 1 N N N -22.505 -0.533 -29.909 1.459 1.792 0.328 C13 FNO 2 FNO C15 C3 C 0 1 Y N N -22.509 -2.652 -26.973 2.528 -1.758 -0.349 C15 FNO 3 FNO C17 C4 C 0 1 N N N -20.122 -4.362 -33.728 -5.045 0.238 -0.705 C17 FNO 4 FNO C20 C5 C 0 1 N N N -20.149 -2.853 -33.543 -4.568 0.904 -1.970 C20 FNO 5 FNO C21 C6 C 0 1 N N N -19.377 -4.937 -34.918 -6.504 0.285 -0.332 C21 FNO 6 FNO C06 C7 C 0 1 N N R -22.706 -3.751 -31.799 -1.959 0.187 0.993 C06 FNO 7 FNO C07 C8 C 0 1 N N N -22.647 -2.760 -30.655 -0.502 0.361 0.649 C07 FNO 8 FNO C08 C9 C 0 1 N N N -21.585 -4.749 -31.533 -2.716 -0.324 -0.235 C08 FNO 9 FNO C09 C10 C 0 1 Y N N -22.541 -2.262 -28.298 1.736 -0.656 -0.025 C09 FNO 10 FNO C11 C11 C 0 1 Y N N -22.482 -0.933 -28.594 2.303 0.634 -0.014 C11 FNO 11 FNO C12 C12 C 0 1 N N N -22.584 -1.423 -30.946 0.037 1.587 0.660 C12 FNO 12 FNO C14 C13 C 0 1 N N N -20.833 -5.303 -32.751 -4.190 -0.382 0.071 C14 FNO 13 FNO C16 C14 C 0 1 Y N N -22.400 -0.027 -27.567 3.652 0.799 -0.333 C16 FNO 14 FNO C18 C15 C 0 1 Y N N -22.428 -1.753 -25.949 3.879 -1.574 -0.660 C18 FNO 15 FNO C19 C16 C 0 1 Y N N -22.370 -0.415 -26.254 4.431 -0.316 -0.654 C19 FNO 16 FNO O01 O1 O 0 1 N N N -23.934 -4.414 -31.746 -2.088 -0.757 2.058 O01 FNO 17 FNO O02 O2 O 0 1 N N N -22.662 -4.358 -29.074 -0.194 -1.927 0.300 O02 FNO 18 FNO O03 O3 O 0 1 N N N -22.554 -3.960 -26.719 1.992 -3.003 -0.356 O03 FNO 19 FNO O04 O4 O 0 1 N N N -22.455 0.642 -30.183 1.934 2.911 0.342 O04 FNO 20 FNO O05 O5 O 0 1 N N N -22.352 1.260 -27.900 4.204 2.037 -0.331 O05 FNO 21 FNO H1 H1 H 0 1 N N N -20.726 -2.604 -32.640 -4.032 0.179 -2.583 H1 FNO 22 FNO H2 H2 H 0 1 N N N -19.120 -2.478 -33.436 -5.425 1.286 -2.525 H2 FNO 23 FNO H3 H3 H 0 1 N N N -20.620 -2.385 -34.420 -3.902 1.729 -1.718 H3 FNO 24 FNO H4 H4 H 0 1 N N N -19.455 -6.034 -34.905 -7.017 -0.576 -0.762 H4 FNO 25 FNO H5 H5 H 0 1 N N N -19.818 -4.550 -35.848 -6.603 0.262 0.753 H5 FNO 26 FNO H6 H6 H 0 1 N N N -18.318 -4.644 -34.864 -6.948 1.202 -0.718 H6 FNO 27 FNO H7 H7 H 0 1 N N N -22.546 -3.241 -32.761 -2.376 1.145 1.304 H7 FNO 28 FNO H8 H8 H 0 1 N N N -22.024 -5.604 -30.998 -2.545 0.351 -1.074 H8 FNO 29 FNO H9 H9 H 0 1 N N N -20.847 -4.252 -30.887 -2.359 -1.321 -0.493 H9 FNO 30 FNO H10 H10 H 0 1 N N N -22.596 -1.079 -31.970 -0.577 2.438 0.916 H10 FNO 31 FNO H11 H11 H 0 1 N N N -20.805 -6.369 -32.921 -4.542 -0.933 0.930 H11 FNO 32 FNO H12 H12 H 0 1 N N N -22.410 -2.086 -24.922 4.493 -2.428 -0.905 H12 FNO 33 FNO H13 H13 H 0 1 N N N -22.302 0.322 -25.468 5.475 -0.187 -0.901 H13 FNO 34 FNO H14 H14 H 0 1 N N N -24.098 -4.707 -30.857 -1.737 -1.634 1.851 H14 FNO 35 FNO H15 H15 H 0 1 N N N -22.606 -4.440 -27.537 2.046 -3.459 0.495 H15 FNO 36 FNO H16 H16 H 0 1 N N N -22.379 1.344 -28.846 4.578 2.300 0.521 H16 FNO 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FNO C21 C17 SING N N 1 FNO C17 C20 SING N N 2 FNO C17 C14 DOUB N N 3 FNO C14 C08 SING N N 4 FNO C06 O01 SING N N 5 FNO C06 C08 SING N N 6 FNO C06 C07 SING N N 7 FNO C12 C07 DOUB N N 8 FNO C12 C13 SING N N 9 FNO C07 C10 SING N N 10 FNO O04 C13 DOUB N N 11 FNO C13 C11 SING N N 12 FNO C10 O02 DOUB N N 13 FNO C10 C09 SING N N 14 FNO C11 C09 DOUB Y N 15 FNO C11 C16 SING Y N 16 FNO C09 C15 SING Y N 17 FNO O05 C16 SING N N 18 FNO C16 C19 DOUB Y N 19 FNO C15 O03 SING N N 20 FNO C15 C18 DOUB Y N 21 FNO C19 C18 SING Y N 22 FNO C20 H1 SING N N 23 FNO C20 H2 SING N N 24 FNO C20 H3 SING N N 25 FNO C21 H4 SING N N 26 FNO C21 H5 SING N N 27 FNO C21 H6 SING N N 28 FNO C06 H7 SING N N 29 FNO C08 H8 SING N N 30 FNO C08 H9 SING N N 31 FNO C12 H10 SING N N 32 FNO C14 H11 SING N N 33 FNO C18 H12 SING N N 34 FNO C19 H13 SING N N 35 FNO O01 H14 SING N N 36 FNO O03 H15 SING N N 37 FNO O05 H16 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FNO InChI InChI 1.03 "InChI=1S/C16H16O5/c1-8(2)3-4-10(17)9-7-13(20)14-11(18)5-6-12(19)15(14)16(9)21/h3,5-7,10,17-19H,4H2,1-2H3/t10-/m1/s1" FNO InChIKey InChI 1.03 NEZONWMXZKDMKF-SNVBAGLBSA-N FNO SMILES_CANONICAL CACTVS 3.385 "CC(C)=CC[C@@H](O)C1=CC(=O)c2c(O)ccc(O)c2C1=O" FNO SMILES CACTVS 3.385 "CC(C)=CC[CH](O)C1=CC(=O)c2c(O)ccc(O)c2C1=O" FNO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CC[C@H](C1=CC(=O)c2c(ccc(c2C1=O)O)O)O)C" FNO SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCC(C1=CC(=O)c2c(ccc(c2C1=O)O)O)O)C" # _pdbx_chem_comp_identifier.comp_id FNO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(1~{R})-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(oxidanyl)naphthalene-1,4-dione" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id FNO _pdbx_chem_comp_synonyms.name shikonin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FNO "Create component" 2020-06-11 PDBJ FNO "Modify coordinates" 2020-09-17 PDBJ FNO "Modify descriptor" 2020-09-17 PDBJ FNO "Modify name" 2020-09-17 PDBJ FNO "Modify synonyms" 2020-09-17 PDBJ FNO "Modify synonyms" 2021-03-01 PDBE FNO "Initial release" 2021-04-07 RCSB ##