data_FNR # _chem_comp.id FNR _chem_comp.name "1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N4 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-02-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FNR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2FZ5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FNR C9A C9A C 0 1 Y N N 13.487 -31.798 6.752 2.624 1.212 -0.293 C9A FNR 1 FNR N10 N10 N 0 1 N N N 12.490 -31.584 5.746 2.114 -0.053 -0.627 N10 FNR 2 FNR CAA C10A C 0 1 N N N 12.482 -32.382 4.579 2.861 -1.181 -0.366 CAA FNR 3 FNR N1 N1 N 0 1 N N N 11.532 -32.141 3.631 2.520 -2.388 -0.928 N1 FNR 4 FNR C2 C2 C 0 1 N N N 11.448 -32.891 2.541 3.253 -3.487 -0.669 C2 FNR 5 FNR O2 O2 O 0 1 N N N 10.585 -32.633 1.700 2.938 -4.548 -1.174 O2 FNR 6 FNR N3 N3 N 0 1 N N N 12.316 -33.926 2.314 4.328 -3.433 0.138 N3 FNR 7 FNR C4 C4 C 0 1 N N N 13.323 -34.216 3.259 4.699 -2.270 0.710 C4 FNR 8 FNR O4 O4 O 0 1 N N N 14.045 -35.170 3.102 5.675 -2.226 1.441 O4 FNR 9 FNR C4A C4A C 0 1 N N N 13.396 -33.407 4.424 3.952 -1.109 0.456 C4A FNR 10 FNR N5 N5 N 0 1 N N N 14.388 -33.654 5.405 4.319 0.129 1.039 N5 FNR 11 FNR C5A C5A C 0 1 Y N N 14.438 -32.831 6.552 3.735 1.305 0.546 C5A FNR 12 FNR C6 C6 C 0 1 Y N N 15.460 -33.086 7.476 4.247 2.546 0.881 C6 FNR 13 FNR C7 C7 C 0 1 Y N N 15.525 -32.299 8.636 3.655 3.693 0.381 C7 FNR 14 FNR C7M C7M C 0 1 N N N 16.663 -32.638 9.610 4.211 5.046 0.744 C7M FNR 15 FNR C8 C8 C 0 1 Y N N 14.574 -31.263 8.860 2.555 3.601 -0.450 C8 FNR 16 FNR C8M C8M C 0 1 N N N 14.590 -30.345 10.097 1.916 4.855 -0.990 C8M FNR 17 FNR C9 C9 C 0 1 Y N N 13.559 -31.012 7.924 2.040 2.362 -0.793 C9 FNR 18 FNR "C1'" "C1'" C 0 1 N N N 11.398 -30.600 5.938 0.792 -0.174 -1.248 "C1'" FNR 19 FNR "C2'" "C2'" C 0 1 N N S 10.232 -31.152 6.761 -0.284 -0.180 -0.160 "C2'" FNR 20 FNR "O2'" "O2'" O 0 1 N N N 9.625 -32.278 6.103 -0.140 -1.352 0.645 "O2'" FNR 21 FNR "C3'" "C3'" C 0 1 N N S 9.208 -30.051 7.006 -1.668 -0.176 -0.812 "C3'" FNR 22 FNR "O3'" "O3'" O 0 1 N N N 9.861 -28.833 7.421 -1.811 0.996 -1.617 "O3'" FNR 23 FNR "C4'" "C4'" C 0 1 N N R 8.159 -30.482 8.043 -2.744 -0.183 0.275 "C4'" FNR 24 FNR "O4'" "O4'" O 0 1 N N N 7.018 -29.632 7.903 -2.601 -1.355 1.080 "O4'" FNR 25 FNR "C5'" "C5'" C 0 1 N N N 8.675 -30.448 9.484 -4.128 -0.178 -0.377 "C5'" FNR 26 FNR "O5'" "O5'" O 0 1 N N N 9.478 -31.597 9.743 -5.131 -0.067 0.635 "O5'" FNR 27 FNR P P P 0 1 N N N 10.033 -31.845 11.213 -6.707 -0.032 0.307 P FNR 28 FNR O1P O1P O 0 1 N N N 11.009 -30.591 11.333 -7.052 1.301 -0.528 O1P FNR 29 FNR O2P O2P O 0 1 N N N 10.804 -33.100 11.206 -7.072 -1.223 -0.492 O2P FNR 30 FNR O3P O3P O 0 1 N N N 8.915 -31.673 12.183 -7.542 -0.033 1.684 O3P FNR 31 FNR HN1 HN1 H 0 1 N N N 10.888 -31.387 3.760 1.748 -2.448 -1.513 HN1 FNR 32 FNR H3 H3 H 0 1 N N N 12.236 -34.474 1.481 4.840 -4.239 0.310 H3 FNR 33 FNR H5 H5 H 0 1 N N N 15.043 -34.400 5.287 4.962 0.162 1.765 H5 FNR 34 FNR H7 H7 H 0 1 N N N 16.181 -33.870 7.299 5.107 2.619 1.531 H7 FNR 35 FNR H7M1 H7M1 H 0 0 N N N 17.554 -32.047 9.353 4.966 5.336 0.014 H7M1 FNR 36 FNR H7M2 H7M2 H 0 0 N N N 16.349 -32.401 10.637 3.406 5.781 0.747 H7M2 FNR 37 FNR H7M3 H7M3 H 0 0 N N N 16.901 -33.710 9.537 4.663 4.999 1.735 H7M3 FNR 38 FNR H8M1 H8M1 H 0 0 N N N 15.212 -29.461 9.891 2.383 5.121 -1.939 H8M1 FNR 39 FNR H8M2 H8M2 H 0 0 N N N 13.564 -30.025 10.329 0.851 4.682 -1.146 H8M2 FNR 40 FNR H8M3 H8M3 H 0 0 N N N 15.006 -30.893 10.955 2.051 5.668 -0.277 H8M3 FNR 41 FNR H9 H9 H 0 1 N N N 12.840 -30.225 8.098 1.183 2.294 -1.446 H9 FNR 42 FNR "H1'1" "H1'1" H 0 0 N N N 11.807 -29.720 6.456 0.627 0.671 -1.917 "H1'1" FNR 43 FNR "H1'2" "H1'2" H 0 0 N N N 11.019 -30.301 4.950 0.741 -1.103 -1.815 "H1'2" FNR 44 FNR H6 H6 H 0 1 N N N 10.627 -31.473 7.736 -0.174 0.706 0.465 H6 FNR 45 FNR "H2'" "H2'" H 0 1 N N N 8.905 -32.604 6.631 -0.190 -2.180 0.147 "H2'" FNR 46 FNR H4 H4 H 0 1 N N N 8.682 -29.865 6.058 -1.778 -1.062 -1.438 H4 FNR 47 FNR "H3'" "H3'" H 0 1 N N N 9.209 -28.158 7.569 -1.725 1.824 -1.125 "H3'" FNR 48 FNR H2 H2 H 0 1 N N N 7.867 -31.518 7.814 -2.634 0.703 0.900 H2 FNR 49 FNR "H4'" "H4'" H 0 1 N N N 6.356 -29.883 8.537 -2.687 -2.183 0.588 "H4'" FNR 50 FNR "H5'1" "H5'1" H 0 0 N N N 9.279 -29.541 9.633 -4.206 0.668 -1.060 "H5'1" FNR 51 FNR "H5'2" "H5'2" H 0 0 N N N 7.820 -30.438 10.177 -4.272 -1.106 -0.931 "H5'2" FNR 52 FNR H1 H1 H 0 1 N N N 11.909 -30.893 11.378 -6.839 2.122 -0.064 H1 FNR 53 FNR H3P H3P H 0 1 N N N 8.834 -32.455 12.716 -8.501 -0.013 1.563 H3P FNR 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FNR C9A N10 SING N N 1 FNR C9A C5A DOUB Y N 2 FNR C9A C9 SING Y N 3 FNR N10 CAA SING N N 4 FNR N10 "C1'" SING N N 5 FNR CAA N1 SING N N 6 FNR CAA C4A DOUB N N 7 FNR N1 C2 SING N N 8 FNR N1 HN1 SING N N 9 FNR C2 O2 DOUB N N 10 FNR C2 N3 SING N N 11 FNR N3 C4 SING N N 12 FNR N3 H3 SING N N 13 FNR C4 O4 DOUB N N 14 FNR C4 C4A SING N N 15 FNR C4A N5 SING N N 16 FNR N5 C5A SING N N 17 FNR N5 H5 SING N N 18 FNR C5A C6 SING Y N 19 FNR C6 C7 DOUB Y N 20 FNR C6 H7 SING N N 21 FNR C7 C7M SING N N 22 FNR C7 C8 SING Y N 23 FNR C7M H7M1 SING N N 24 FNR C7M H7M2 SING N N 25 FNR C7M H7M3 SING N N 26 FNR C8 C8M SING N N 27 FNR C8 C9 DOUB Y N 28 FNR C8M H8M1 SING N N 29 FNR C8M H8M2 SING N N 30 FNR C8M H8M3 SING N N 31 FNR C9 H9 SING N N 32 FNR "C1'" "C2'" SING N N 33 FNR "C1'" "H1'1" SING N N 34 FNR "C1'" "H1'2" SING N N 35 FNR "C2'" "O2'" SING N N 36 FNR "C2'" "C3'" SING N N 37 FNR "C2'" H6 SING N N 38 FNR "O2'" "H2'" SING N N 39 FNR "C3'" "O3'" SING N N 40 FNR "C3'" "C4'" SING N N 41 FNR "C3'" H4 SING N N 42 FNR "O3'" "H3'" SING N N 43 FNR "C4'" "O4'" SING N N 44 FNR "C4'" "C5'" SING N N 45 FNR "C4'" H2 SING N N 46 FNR "O4'" "H4'" SING N N 47 FNR "C5'" "O5'" SING N N 48 FNR "C5'" "H5'1" SING N N 49 FNR "C5'" "H5'2" SING N N 50 FNR "O5'" P SING N N 51 FNR P O1P SING N N 52 FNR P O2P DOUB N N 53 FNR P O3P SING N N 54 FNR O1P H1 SING N N 55 FNR O3P H3P SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FNR SMILES ACDLabs 12.01 "c23N(C=1NC(=O)NC(=O)C=1Nc2cc(C)c(C)c3)CC(O)C(O)C(O)COP(O)(=O)O" FNR InChI InChI 1.03 "InChI=1S/C17H23N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,18,22-24H,5-6H2,1-2H3,(H2,27,28,29)(H2,19,20,25,26)/t11-,12+,14-/m0/s1" FNR InChIKey InChI 1.03 YTNIXZGTHTVJBW-SCRDCRAPSA-N FNR SMILES_CANONICAL CACTVS 3.385 "Cc1cc2NC3=C(NC(=O)NC3=O)N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C" FNR SMILES CACTVS 3.385 "Cc1cc2NC3=C(NC(=O)NC3=O)N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C" FNR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc2c(cc1C)N(C3=C(N2)C(=O)NC(=O)N3)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O" FNR SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc2c(cc1C)N(C3=C(N2)C(=O)NC(=O)N3)CC(C(C(COP(=O)(O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FNR "SYSTEMATIC NAME" ACDLabs 12.01 "1-deoxy-1-(7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl)-5-O-phosphono-D-ribitol" FNR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4S)-5-[7,8-dimethyl-2,4-bis(oxidanylidene)-1,5-dihydrobenzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FNR "Create component" 2006-02-10 RCSB FNR "Modify descriptor" 2011-06-04 RCSB FNR "Modify aromatic_flag" 2016-02-17 RCSB FNR "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id FNR _pdbx_chem_comp_synonyms.name "TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##