data_FSI # _chem_comp.id FSI _chem_comp.name "5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H18 F N O9" _chem_comp.mon_nstd_parent_comp_id SLB _chem_comp.pdbx_synonyms ;5-(acetylamino)-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid; 3-FLUOROSIALIC ACID; 5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulosonic acid; 5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-L-manno-non-2-ulosonic acid; 5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-manno-non-2-ulosonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-01-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 327.260 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FSI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2AH2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 FSI "5-(acetylamino)-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid" PDB ? 2 FSI "3-FLUOROSIALIC ACID" PDB ? 3 FSI "5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulosonic acid" PDB ? 4 FSI "5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-L-manno-non-2-ulosonic acid" PDB ? 5 FSI "5-acetamido-3,5-dideoxy-3-fluoro-D-erythro-manno-non-2-ulosonic acid" PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FSI O2 O2 O 0 1 N Y N N N N -8.461 14.077 5.887 0.293 -2.008 -1.837 O2 FSI 1 FSI C1 C1 C 0 1 N N N N N N -9.128 15.150 3.866 0.111 -3.315 0.165 C1 FSI 2 FSI F1 F1 F 0 1 N N N N N N -10.577 16.946 5.363 1.922 -1.508 1.376 F1 FSI 3 FSI C2 C2 C 0 1 N N R N N N -8.914 15.318 5.356 0.394 -1.952 -0.413 C2 FSI 4 FSI C3 C3 C 0 1 N N R N N N -10.110 15.899 6.050 1.806 -1.513 -0.018 C3 FSI 5 FSI C4 C4 C 0 1 N N R N N N -9.727 16.435 7.425 2.063 -0.103 -0.558 C4 FSI 6 FSI O4 O4 O 0 1 N N N N N N -10.838 17.001 8.026 3.352 0.345 -0.132 O4 FSI 7 FSI C5 C5 C 0 1 N N R N N N -8.663 17.564 7.321 0.988 0.844 -0.017 C5 FSI 8 FSI N5 N5 N 0 1 N N N N N N -8.398 18.150 8.531 1.180 2.180 -0.586 N5 FSI 9 FSI C6 C6 C 0 1 N N R N N N -7.485 16.760 6.739 -0.393 0.313 -0.412 C6 FSI 10 FSI O6 O6 O 0 1 N N N N N N -7.815 16.213 5.445 -0.556 -1.013 0.095 O6 FSI 11 FSI C7 C7 C 0 1 N N R N N N -6.175 17.533 6.585 -1.475 1.221 0.176 C7 FSI 12 FSI O7 O7 O 0 1 N N N N N N -6.206 18.345 5.433 -1.290 1.330 1.589 O7 FSI 13 FSI C8 C8 C 0 1 N N R N N N -4.965 16.572 6.576 -2.854 0.623 -0.112 C8 FSI 14 FSI O8 O8 O 0 1 N N N N N N -4.828 16.000 7.861 -3.040 0.514 -1.525 O8 FSI 15 FSI C9 C9 C 0 1 N N N N N N -3.661 17.265 6.193 -3.937 1.531 0.476 C9 FSI 16 FSI O9 O9 O 0 1 N N N N N N -3.380 18.245 7.184 -5.216 0.916 0.309 O9 FSI 17 FSI C10 C10 C 0 1 N N N N N N -8.419 19.479 8.768 2.043 3.040 -0.009 C10 FSI 18 FSI O10 O10 O 0 1 N N N N N N -8.544 20.331 7.867 2.660 2.708 0.981 O10 FSI 19 FSI C11 C11 C 0 1 N N N N N N -8.249 19.977 10.191 2.240 4.415 -0.594 C11 FSI 20 FSI O1A O1A O 0 1 N N N N N N -8.124 15.151 3.102 -0.861 -3.486 0.861 O1A FSI 21 FSI O1B O1B O 0 1 N N N N N N -10.281 14.987 3.429 0.940 -4.338 -0.093 O1B FSI 22 FSI HO2 HO2 H 0 1 N Y N N N N -8.321 14.164 6.823 -0.577 -2.280 -2.159 HO2 FSI 23 FSI H32 H3 H 0 1 N N N N N N -10.875 15.118 6.171 2.534 -2.204 -0.441 H32 FSI 24 FSI H4 H4 H 0 1 N N N N N N -9.318 15.615 8.033 2.024 -0.116 -1.647 H4 FSI 25 FSI HO4 HO4 H 0 1 N Y N N N N -10.599 17.335 8.883 4.082 -0.213 -0.434 HO4 FSI 26 FSI H5 H5 H 0 1 N N N N N N -8.998 18.303 6.578 1.062 0.896 1.070 H5 FSI 27 FSI HN5 HN5 H 0 1 N N N N N N -8.172 17.548 9.297 0.686 2.446 -1.377 HN5 FSI 28 FSI H6 H6 H 0 1 N N N N N N -7.292 15.925 7.428 -0.480 0.300 -1.498 H6 FSI 29 FSI H7 H7 H 0 1 N N N N N N -6.070 18.177 7.470 -1.406 2.210 -0.277 H7 FSI 30 FSI HO7 HO7 H 0 1 N Y N N N N -5.385 18.816 5.355 -1.339 0.486 2.059 HO7 FSI 31 FSI H8 H8 H 0 1 N N N N N N -5.164 15.782 5.837 -2.924 -0.366 0.341 H8 FSI 32 FSI HO8 HO8 H 0 1 N Y N N N N -4.086 15.407 7.867 -2.991 1.358 -1.994 HO8 FSI 33 FSI H92 H9 H 0 1 N N N N N N -2.844 16.529 6.153 -3.744 1.686 1.537 H92 FSI 34 FSI H91 H9A H 0 1 N N N N N N -3.769 17.747 5.210 -3.925 2.491 -0.040 H91 FSI 35 FSI HO9 HO9 H 0 1 N Y N N N N -2.570 18.692 6.967 -5.951 1.437 0.660 HO9 FSI 36 FSI H111 H11 H 0 0 N N N N N N -8.264 21.077 10.199 1.606 4.530 -1.473 H111 FSI 37 FSI H113 H11A H 0 0 N N N N N N -9.071 19.594 10.814 1.973 5.167 0.148 H113 FSI 38 FSI H112 H11B H 0 0 N N N N N N -7.289 19.621 10.592 3.284 4.541 -0.880 H112 FSI 39 FSI HO1B HO1B H 0 0 N N N N N N -10.250 14.874 2.486 0.718 -5.194 0.300 HO1B FSI 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FSI C2 O2 SING N N 1 FSI O2 HO2 SING N N 2 FSI O1A C1 DOUB N N 3 FSI O1B C1 SING N N 4 FSI C1 C2 SING N N 5 FSI F1 C3 SING N N 6 FSI C2 O6 SING N N 7 FSI C2 C3 SING N N 8 FSI C3 C4 SING N N 9 FSI C3 H32 SING N N 10 FSI C5 C4 SING N N 11 FSI C4 O4 SING N N 12 FSI C4 H4 SING N N 13 FSI O4 HO4 SING N N 14 FSI C6 C5 SING N N 15 FSI C5 N5 SING N N 16 FSI C5 H5 SING N N 17 FSI N5 C10 SING N N 18 FSI N5 HN5 SING N N 19 FSI O6 C6 SING N N 20 FSI C7 C6 SING N N 21 FSI C6 H6 SING N N 22 FSI O7 C7 SING N N 23 FSI C8 C7 SING N N 24 FSI C7 H7 SING N N 25 FSI O7 HO7 SING N N 26 FSI C9 C8 SING N N 27 FSI C8 O8 SING N N 28 FSI C8 H8 SING N N 29 FSI O8 HO8 SING N N 30 FSI C9 O9 SING N N 31 FSI C9 H92 SING N N 32 FSI C9 H91 SING N N 33 FSI O9 HO9 SING N N 34 FSI O10 C10 DOUB N N 35 FSI C10 C11 SING N N 36 FSI C11 H111 SING N N 37 FSI C11 H113 SING N N 38 FSI C11 H112 SING N N 39 FSI O1B HO1B SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FSI SMILES ACDLabs 12.01 "O=C(O)C1(O)OC(C(NC(=O)C)C(O)C1F)C(O)C(O)CO" FSI InChI InChI 1.03 "InChI=1S/C11H18FNO9/c1-3(15)13-5-7(18)9(12)11(21,10(19)20)22-8(5)6(17)4(16)2-14/h4-9,14,16-18,21H,2H2,1H3,(H,13,15)(H,19,20)/t4-,5-,6-,7-,8-,9-,11+/m1/s1" FSI InChIKey InChI 1.03 ALJLGESFXXDPKH-RISWTRDCSA-N FSI SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O" FSI SMILES CACTVS 3.370 "CC(=O)N[CH]1[CH](O)[CH](F)[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O" FSI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H]1[C@H]([C@H]([C@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)F)O" FSI SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(C(C(OC1C(C(CO)O)O)(C(=O)O)O)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FSI "SYSTEMATIC NAME" ACDLabs 12.01 "5-(acetylamino)-3,5-dideoxy-3-fluoro-D-erythro-alpha-L-manno-non-2-ulopyranosonic acid" FSI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;(2R,3R,4R,5R,6R)-5-acetamido-3-fluoranyl-2,4-bis(oxidanyl)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid ; FSI "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Neup5Ac3fluoro # _pdbx_chem_comp_related.comp_id FSI _pdbx_chem_comp_related.related_comp_id SLB _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 FSI C1 SLB C1 "Carbohydrate core" 2 FSI C10 SLB C10 "Carbohydrate core" 3 FSI C11 SLB C11 "Carbohydrate core" 4 FSI C2 SLB C2 "Carbohydrate core" 5 FSI C3 SLB C3 "Carbohydrate core" 6 FSI C4 SLB C4 "Carbohydrate core" 7 FSI C5 SLB C5 "Carbohydrate core" 8 FSI C6 SLB C6 "Carbohydrate core" 9 FSI C7 SLB C7 "Carbohydrate core" 10 FSI C8 SLB C8 "Carbohydrate core" 11 FSI C9 SLB C9 "Carbohydrate core" 12 FSI N5 SLB N5 "Carbohydrate core" 13 FSI O10 SLB O10 "Carbohydrate core" 14 FSI O1A SLB O1A "Carbohydrate core" 15 FSI O1B SLB O1B "Carbohydrate core" 16 FSI O2 SLB O2 "Carbohydrate core" 17 FSI O4 SLB O4 "Carbohydrate core" 18 FSI O6 SLB O6 "Carbohydrate core" 19 FSI O7 SLB O7 "Carbohydrate core" 20 FSI O8 SLB O8 "Carbohydrate core" 21 FSI O9 SLB O9 "Carbohydrate core" 22 FSI H111 SLB H111 "Carbohydrate core" 23 FSI H113 SLB H113 "Carbohydrate core" 24 FSI H112 SLB H112 "Carbohydrate core" 25 FSI H32 SLB H32 "Carbohydrate core" 26 FSI H4 SLB H4 "Carbohydrate core" 27 FSI H5 SLB H5 "Carbohydrate core" 28 FSI H6 SLB H6 "Carbohydrate core" 29 FSI H7 SLB H7 "Carbohydrate core" 30 FSI H8 SLB H8 "Carbohydrate core" 31 FSI H92 SLB H92 "Carbohydrate core" 32 FSI H91 SLB H91 "Carbohydrate core" 33 FSI HN5 SLB HN5 "Carbohydrate core" 34 FSI HO1B SLB HO1B "Carbohydrate core" 35 FSI HO2 SLB HO2 "Carbohydrate core" 36 FSI HO4 SLB HO4 "Carbohydrate core" 37 FSI HO7 SLB HO7 "Carbohydrate core" 38 FSI HO8 SLB HO8 "Carbohydrate core" 39 FSI HO9 SLB HO9 "Carbohydrate core" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support FSI "CARBOHYDRATE ISOMER" D PDB ? FSI "CARBOHYDRATE RING" pyranose PDB ? FSI "CARBOHYDRATE ANOMER" beta PDB ? FSI "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FSI "Create component" 2004-01-19 RCSB FSI "Modify descriptor" 2011-06-04 RCSB FSI "Other modification" 2013-01-08 RCSB FSI "Other modification" 2020-07-03 RCSB FSI "Modify parent residue" 2020-07-17 RCSB FSI "Modify name" 2020-07-17 RCSB FSI "Modify synonyms" 2020-07-17 RCSB FSI "Modify linking type" 2020-07-17 RCSB FSI "Modify atom id" 2020-07-17 RCSB FSI "Modify component atom id" 2020-07-17 RCSB FSI "Modify leaving atom flag" 2020-07-17 RCSB FSI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id FSI _pdbx_chem_comp_pcm.modified_residue_id TYR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OH _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #