data_FUB # _chem_comp.id FUB _chem_comp.name beta-L-arabinofuranose _chem_comp.type "L-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-L-arabinose; L-arabinose; arabinose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-05-27 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FUB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3D61 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 FUB beta-L-arabinose PDB ? 2 FUB L-arabinose PDB ? 3 FUB arabinose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FUB O5 "O5'" O 0 1 N N N -16.903 3.877 3.549 -3.112 -0.967 0.123 O5 FUB 1 FUB C5 "C5'" C 0 1 N N N -17.789 3.826 2.406 -2.211 0.040 0.589 C5 FUB 2 FUB C4 "C4'" C 0 1 N N S -17.236 2.907 1.309 -0.981 0.084 -0.319 C4 FUB 3 FUB O4 "O4'" O 0 1 N N N -17.249 1.493 1.648 -0.221 -1.138 -0.196 O4 FUB 4 FUB C3 "C3'" C 0 1 N N R -15.796 3.259 0.914 -0.014 1.198 0.139 C3 FUB 5 FUB O3 "O3'" O 0 1 N N N -15.777 4.273 -0.096 -0.194 2.375 -0.652 O3 FUB 6 FUB C2 "C2'" C 0 1 N N R -15.258 1.938 0.458 1.390 0.596 -0.094 C2 FUB 7 FUB O2 "O2'" O 0 1 N N N -13.817 1.854 0.553 2.105 0.500 1.140 O2 FUB 8 FUB C1 "C1'" C 0 1 N N S -15.917 0.978 1.397 1.105 -0.811 -0.666 C1 FUB 9 FUB O1 "O1'" O 0 1 N Y N -15.281 0.848 2.676 2.056 -1.753 -0.166 O1 FUB 10 FUB HO5 "HO5'" H 0 1 N Y N -16.001 3.888 3.251 -3.916 -1.051 0.652 HO5 FUB 11 FUB H51 "H5'" H 0 1 N N N -18.767 3.441 2.732 -2.710 1.009 0.572 H51 FUB 12 FUB H52 "H5'A" H 0 1 N N N -17.882 4.842 1.994 -1.903 -0.192 1.608 H52 FUB 13 FUB H4 "H4'" H 0 1 N N N -17.927 3.082 0.471 -1.280 0.242 -1.356 H4 FUB 14 FUB H3 "H3'" H 0 1 N N N -15.188 3.692 1.722 -0.163 1.422 1.195 H3 FUB 15 FUB HO3 "HO3'" H 0 1 N Y N -15.773 5.130 0.315 0.388 3.106 -0.407 HO3 FUB 16 FUB H2 "H2'" H 0 1 N N N -15.467 1.744 -0.604 1.949 1.196 -0.812 H2 FUB 17 FUB HO2 "HO2'" H 0 1 N Y N -13.442 1.836 -0.320 2.993 0.128 1.052 HO2 FUB 18 FUB H1 "H1'" H 0 1 N N N -15.879 -0.012 0.919 1.127 -0.789 -1.755 H1 FUB 19 FUB HO1 "HO1'" H 0 1 N Y N -14.339 0.819 2.560 1.926 -2.654 -0.492 HO1 FUB 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FUB C5 O5 SING N N 1 FUB O5 HO5 SING N N 2 FUB C4 C5 SING N N 3 FUB C5 H51 SING N N 4 FUB C5 H52 SING N N 5 FUB C3 C4 SING N N 6 FUB C4 O4 SING N N 7 FUB C4 H4 SING N N 8 FUB C1 O4 SING N N 9 FUB O3 C3 SING N N 10 FUB C2 C3 SING N N 11 FUB C3 H3 SING N N 12 FUB O3 HO3 SING N N 13 FUB C2 O2 SING N N 14 FUB C2 C1 SING N N 15 FUB C2 H2 SING N N 16 FUB O2 HO2 SING N N 17 FUB C1 O1 SING N N 18 FUB C1 H1 SING N N 19 FUB O1 HO1 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FUB SMILES ACDLabs 10.04 "OC1C(OC(O)C1O)CO" FUB SMILES_CANONICAL CACTVS 3.341 "OC[C@@H]1O[C@H](O)[C@H](O)[C@H]1O" FUB SMILES CACTVS 3.341 "OC[CH]1O[CH](O)[CH](O)[CH]1O" FUB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]1[C@@H]([C@H]([C@H](O1)O)O)O)O" FUB SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(O1)O)O)O)O" FUB InChI InChI 1.03 "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m0/s1" FUB InChIKey InChI 1.03 HMFHBZSHGGEWLO-KLVWXMOXSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUB "SYSTEMATIC NAME" ACDLabs 10.04 beta-L-arabinofuranose FUB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4R,5S)-5-(hydroxymethyl)oxolane-2,3,4-triol" FUB "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LArafb FUB "COMMON NAME" GMML 1.0 b-L-arabinofuranose FUB "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-L-Araf FUB "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Ara # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support FUB "CARBOHYDRATE ISOMER" L PDB ? FUB "CARBOHYDRATE RING" furanose PDB ? FUB "CARBOHYDRATE ANOMER" beta PDB ? FUB "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FUB "Create component" 2008-05-27 PDBJ FUB "Modify descriptor" 2011-06-04 RCSB FUB "Other modification" 2019-08-12 RCSB FUB "Other modification" 2019-12-19 RCSB FUB "Other modification" 2020-07-03 RCSB FUB "Modify synonyms" 2020-07-17 RCSB FUB "Modify atom id" 2020-07-17 RCSB FUB "Modify component atom id" 2020-07-17 RCSB ##