data_FUP # _chem_comp.id FUP _chem_comp.name "2',3'-DIDEOXY-3'-FLUORO-URIDIDINE-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H13 F N2 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms FUDP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.153 _chem_comp.one_letter_code ? _chem_comp.three_letter_code FUP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1B99 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal FUP PB PB P 0 1 N N N 4.090 -20.266 5.354 -1.040 -0.194 4.842 PB FUP 1 FUP O1B O1B O 0 1 N N N 5.212 -19.961 6.244 0.189 0.187 5.572 O1B FUP 2 FUP O2B O2B O 0 1 N N N 3.220 -19.077 5.204 -1.948 -1.139 5.778 O2B FUP 3 FUP O3B O3B O 0 1 N N N 4.453 -20.887 4.073 -1.868 1.130 4.455 O3B FUP 4 FUP O3A O3A O 0 1 N N N 3.169 -21.331 6.092 -0.643 -0.990 3.500 O3A FUP 5 FUP PA PA P 0 1 N N S 1.992 -22.254 5.587 0.258 0.008 2.616 PA FUP 6 FUP O1A O1A O 0 1 N N N 2.152 -22.401 4.125 -0.522 1.223 2.295 O1A FUP 7 FUP O2A O2A O 0 1 N N N 1.967 -23.467 6.424 1.574 0.420 3.447 O2A FUP 8 FUP "O5'" O5* O 0 1 N N N 0.685 -21.372 5.914 0.693 -0.727 1.252 "O5'" FUP 9 FUP "C5'" C5* C 0 1 N N N 0.026 -20.556 4.919 1.487 0.205 0.515 "C5'" FUP 10 FUP "C4'" C4* C 0 1 N N R -0.850 -19.581 5.624 1.935 -0.434 -0.800 "C4'" FUP 11 FUP "O4'" O4* O 0 1 N N N -1.463 -20.219 6.744 0.787 -0.764 -1.599 "O4'" FUP 12 FUP "C3'" C3* C 0 1 N N S -0.014 -18.469 6.203 2.786 0.566 -1.605 "C3'" FUP 13 FUP "F3'" F3* F 0 1 N N N -0.173 -17.294 5.430 4.070 0.058 -1.829 "F3'" FUP 14 FUP "C2'" C2* C 0 1 N N N -0.377 -18.461 7.701 2.020 0.716 -2.946 "C2'" FUP 15 FUP "C1'" C1* C 0 1 N N R -1.662 -19.290 7.830 1.166 -0.576 -2.979 "C1'" FUP 16 FUP N1 N1 N 0 1 N N N -1.963 -20.068 9.106 -0.019 -0.393 -3.820 N1 FUP 17 FUP C2 C2 C 0 1 N N N -3.140 -19.809 9.843 -0.871 0.614 -3.559 C2 FUP 18 FUP O2 O2 O 0 1 N N N -3.843 -18.819 9.731 -0.644 1.367 -2.632 O2 FUP 19 FUP N3 N3 N 0 1 N N N -3.527 -20.723 10.776 -1.966 0.808 -4.318 N3 FUP 20 FUP C4 C4 C 0 1 N N N -2.878 -21.917 11.035 -2.232 -0.016 -5.351 C4 FUP 21 FUP O4 O4 O 0 1 N N N -3.326 -22.672 11.888 -3.225 0.154 -6.035 O4 FUP 22 FUP C5 C5 C 0 1 N N N -1.684 -22.159 10.250 -1.346 -1.084 -5.632 C5 FUP 23 FUP C6 C6 C 0 1 N N N -1.260 -21.231 9.360 -0.253 -1.253 -4.858 C6 FUP 24 FUP HOB2 2HOB H 0 0 N N N 2.492 -19.274 4.626 -2.163 -0.626 6.568 HOB2 FUP 25 FUP HOB3 3HOB H 0 0 N N N 3.725 -21.084 3.495 -2.659 0.838 3.982 HOB3 FUP 26 FUP HOA2 2HOA H 0 0 N N N 1.258 -24.022 6.120 2.053 -0.398 3.636 HOA2 FUP 27 FUP "H5'1" 1H5* H 0 0 N N N 0.744 -20.063 4.222 0.896 1.096 0.303 "H5'1" FUP 28 FUP "H5'2" 2H5* H 0 0 N N N -0.526 -21.161 4.162 2.363 0.480 1.102 "H5'2" FUP 29 FUP "H4'" H4* H 0 1 N N N -1.600 -19.198 4.893 2.516 -1.333 -0.595 "H4'" FUP 30 FUP "H3'" H3* H 0 1 N N N 1.093 -18.588 6.152 2.840 1.524 -1.088 "H3'" FUP 31 FUP "H2'1" 1H2* H 0 0 N N N 0.449 -18.815 8.360 2.713 0.746 -3.787 "H2'1" FUP 32 FUP "H2'2" 2H2* H 0 0 N N N -0.463 -17.436 8.132 1.385 1.602 -2.936 "H2'2" FUP 33 FUP "H1'" H1* H 0 1 N N N -2.537 -18.599 7.829 1.759 -1.419 -3.333 "H1'" FUP 34 FUP HN3 HN3 H 0 1 N N N -4.360 -20.497 11.318 -2.568 1.542 -4.119 HN3 FUP 35 FUP H5 H5 H 0 1 N N N -1.079 -23.077 10.332 -1.543 -1.756 -6.455 H5 FUP 36 FUP H6 H6 H 0 1 N N N -0.314 -21.428 8.826 0.433 -2.062 -5.058 H6 FUP 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal FUP PB O1B DOUB N N 1 FUP PB O2B SING N N 2 FUP PB O3B SING N N 3 FUP PB O3A SING N N 4 FUP O2B HOB2 SING N N 5 FUP O3B HOB3 SING N N 6 FUP O3A PA SING N N 7 FUP PA O1A DOUB N N 8 FUP PA O2A SING N N 9 FUP PA "O5'" SING N N 10 FUP O2A HOA2 SING N N 11 FUP "O5'" "C5'" SING N N 12 FUP "C5'" "C4'" SING N N 13 FUP "C5'" "H5'1" SING N N 14 FUP "C5'" "H5'2" SING N N 15 FUP "C4'" "O4'" SING N N 16 FUP "C4'" "C3'" SING N N 17 FUP "C4'" "H4'" SING N N 18 FUP "O4'" "C1'" SING N N 19 FUP "C3'" "F3'" SING N N 20 FUP "C3'" "C2'" SING N N 21 FUP "C3'" "H3'" SING N N 22 FUP "C2'" "C1'" SING N N 23 FUP "C2'" "H2'1" SING N N 24 FUP "C2'" "H2'2" SING N N 25 FUP "C1'" N1 SING N N 26 FUP "C1'" "H1'" SING N N 27 FUP N1 C2 SING N N 28 FUP N1 C6 SING N N 29 FUP C2 O2 DOUB N N 30 FUP C2 N3 SING N N 31 FUP N3 C4 SING N N 32 FUP N3 HN3 SING N N 33 FUP C4 O4 DOUB N N 34 FUP C4 C5 SING N N 35 FUP C5 C6 DOUB N N 36 FUP C5 H5 SING N N 37 FUP C6 H6 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor FUP SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)CC2F" FUP SMILES_CANONICAL CACTVS 3.341 "O[P](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H](C[C@@H]1F)N2C=CC(=O)NC2=O" FUP SMILES CACTVS 3.341 "O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH](C[CH]1F)N2C=CC(=O)NC2=O" FUP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O)(O)OP(=O)(O)O)F" FUP SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)OP(=O)(O)O)F" FUP InChI InChI 1.03 "InChI=1S/C9H13FN2O10P2/c10-5-3-8(12-2-1-7(13)11-9(12)14)21-6(5)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8H,3-4H2,(H,18,19)(H,11,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" FUP InChIKey InChI 1.03 WLQBZMZTRNPUDL-SHYZEUOFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUP "SYSTEMATIC NAME" ACDLabs 10.04 "2',3'-dideoxy-3'-fluorouridine 5'-(trihydrogen diphosphate)" FUP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-fluoro-oxolan-2-yl]methyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site FUP "Create component" 1999-07-08 RCSB FUP "Modify descriptor" 2011-06-04 RCSB FUP "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id FUP _pdbx_chem_comp_synonyms.name FUDP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##