data_FYN
#
_chem_comp.id FYN
_chem_comp.name
"S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-9,13,15-TRIHYDROXY-10,10-DIMETHYL-13,15-DIOXIDO-4,8-DIOXO-12,14,16-TRIOXA-3,7-DIAZA-13,15-DIPHOSPHAHEPTADEC-1-YL} THIOFORMATE "
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H36 N7 O17 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-02-26
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 795.544
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code FYN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
FYN C8 C8 C 0 1 Y N N 81.559 -25.204 0.644 10.177 1.752 6.199 C8 FYN 1
FYN N9 N9 N 0 1 Y N N 82.816 -25.012 1.073 10.737 0.512 6.036 N9 FYN 2
FYN C4 C4 C 0 1 Y N N 82.997 -25.689 2.211 11.861 0.475 6.812 C4 FYN 3
FYN C5 C5 C 0 1 Y N N 81.806 -26.338 2.496 11.926 1.720 7.418 C5 FYN 4
FYN N7 N7 N 0 1 Y N N 80.930 -26.026 1.514 10.871 2.506 7.027 N7 FYN 5
FYN N3 N3 N 0 1 Y N N 84.065 -25.837 3.042 12.720 -0.545 6.959 N3 FYN 6
FYN C2 C2 C 0 1 Y N N 83.971 -26.602 4.140 13.712 -0.207 7.812 C2 FYN 7
FYN N1 N1 N 0 1 Y N N 82.825 -27.241 4.441 13.905 0.960 8.472 N1 FYN 8
FYN C6 C6 C 0 1 Y N N 81.733 -27.124 3.644 12.997 1.947 8.276 C6 FYN 9
FYN N6 N6 N 0 1 N N N 80.580 -27.770 3.948 13.142 3.181 8.932 N6 FYN 10
FYN "C1'" "C1'" C 0 1 N N R 83.877 -24.195 0.441 10.220 -0.563 5.186 "C1'" FYN 11
FYN "C2'" "C2'" C 0 1 N N R 83.974 -24.330 -1.078 9.179 -1.445 5.879 "C2'" FYN 12
FYN "O2'" "O2'" O 0 1 N N N 84.722 -25.477 -1.488 9.419 -2.810 5.540 "O2'" FYN 13
FYN "C3'" "C3'" C 0 1 N N S 84.667 -23.032 -1.438 7.872 -0.953 5.285 "C3'" FYN 14
FYN "O3'" "O3'" O 0 1 N N N 86.091 -23.145 -1.310 6.852 -1.929 5.287 "O3'" FYN 15
FYN "C4'" "C4'" C 0 1 N N R 84.148 -22.049 -0.394 8.285 -0.560 3.877 "C4'" FYN 16
FYN "O4'" "O4'" O 0 1 N N N 83.636 -22.815 0.696 9.598 0.007 4.015 "O4'" FYN 17
FYN "C5'" "C5'" C 0 1 N N N 83.048 -21.153 -0.938 7.353 0.451 3.234 "C5'" FYN 18
FYN "O5'" "O5'" O 0 1 N N N 81.908 -21.935 -1.303 7.830 0.757 1.935 "O5'" FYN 19
FYN P1 P1 P 0 1 N N S 80.966 -21.490 -2.531 7.031 1.815 1.007 P1 FYN 20
FYN O11 O11 O 0 1 N N N 80.167 -20.285 -2.087 5.510 1.264 0.973 O11 FYN 21
FYN O12 O12 O 0 1 N N N 80.229 -22.715 -3.009 7.632 2.057 -0.346 O12 FYN 22
FYN O6 O6 O 0 1 N N N 82.039 -21.099 -3.677 6.940 3.126 1.949 O6 FYN 23
FYN P2 P2 P 0 1 N N R 82.285 -19.645 -4.349 8.093 4.108 2.513 P2 FYN 24
FYN O21 O21 O 0 1 N N N 83.679 -19.645 -4.934 8.666 4.820 1.179 O21 FYN 25
FYN O22 O22 O 0 1 N N N 81.855 -18.536 -3.417 9.129 3.445 3.373 O22 FYN 26
FYN O7 O7 O 0 1 N N N 81.264 -19.666 -5.595 7.200 5.250 3.225 O7 FYN 27
FYN CPB CPB C 0 1 N N N 81.129 -18.532 -6.455 6.203 5.908 2.449 CPB FYN 28
FYN CPA CPA C 0 1 N N N 79.667 -18.106 -6.479 5.451 6.967 3.293 CPA FYN 29
FYN CP7 CP7 C 0 1 N N R 79.191 -17.827 -5.045 4.745 6.312 4.517 CP7 FYN 30
FYN CP9 CP9 C 0 1 N N N 79.543 -16.845 -7.322 6.471 8.008 3.811 CP9 FYN 31
FYN CP8 CP8 C 0 1 N N N 78.848 -19.246 -7.070 4.437 7.715 2.405 CP8 FYN 32
FYN OP3 OP3 O 0 1 N N N 80.064 -16.861 -4.422 4.060 7.312 5.267 OP3 FYN 33
FYN CP6 CP6 C 0 1 N N N 77.775 -17.311 -5.014 3.704 5.256 4.152 CP6 FYN 34
FYN OP2 OP2 O 0 1 N N N 76.820 -18.048 -5.250 2.511 5.390 4.417 OP2 FYN 35
FYN NP2 NP2 N 0 1 N N N 77.644 -16.026 -4.699 4.251 4.174 3.481 NP2 FYN 36
FYN CP5 CP5 C 0 1 N N N 76.407 -15.279 -4.600 3.461 3.060 3.009 CP5 FYN 37
FYN CP4 CP4 C 0 1 N N N 76.821 -13.846 -4.325 3.382 1.990 4.089 CP4 FYN 38
FYN CP3 CP3 C 0 1 N N N 75.591 -12.977 -4.232 2.577 0.780 3.651 CP3 FYN 39
FYN OP1 OP1 O 0 1 N N N 74.559 -13.236 -4.835 2.051 0.687 2.545 OP1 FYN 40
FYN NP1 NP1 N 0 1 N N N 75.728 -11.926 -3.445 2.517 -0.182 4.649 NP1 FYN 41
FYN CP2 CP2 C 0 1 N N N 74.766 -10.892 -3.118 1.810 -1.431 4.492 CP2 FYN 42
FYN CP1 CP1 C 0 1 N N N 75.592 -9.901 -2.311 0.354 -1.351 4.931 CP1 FYN 43
FYN S S S 0 1 N N N 76.609 -9.031 -3.430 0.189 -0.935 6.694 S FYN 44
FYN P3 P3 P 0 1 N N N 87.107 -23.351 -2.549 6.383 -2.538 6.706 P3 FYN 45
FYN O31 O31 O 0 1 N N N 86.771 -22.243 -3.525 7.459 -3.232 7.489 O31 FYN 46
FYN O32 O32 O 0 1 N N N 88.475 -23.177 -1.921 5.103 -3.452 6.331 O32 FYN 47
FYN O33 O33 O 0 1 N N N 86.798 -24.753 -3.032 5.723 -1.257 7.439 O33 FYN 48
FYN CM1 CM1 C 0 1 N N N 77.884 -8.497 -2.363 -1.558 -1.018 6.833 CM1 FYN 49
FYN OM2 OM2 O 0 1 N N N 78.497 -7.461 -2.671 -2.125 -0.799 7.896 OM2 FYN 50
FYN H8 H8 H 0 1 N N N 81.119 -24.763 -0.266 9.269 2.047 5.691 H8 FYN 51
FYN "H1'" "H1'" H 0 1 N N N 84.825 -24.574 0.889 11.103 -1.126 4.867 "H1'" FYN 52
FYN H2 H2 H 0 1 N N N 84.846 -26.707 4.803 14.458 -0.975 7.991 H2 FYN 53
FYN H6N1 1H6N H 0 0 N N N 80.309 -28.341 3.147 13.326 4.007 8.394 H6N1 FYN 54
FYN H6N2 2H6N H 0 0 N N N 80.527 -28.345 4.788 13.154 3.208 9.934 H6N2 FYN 55
FYN "H2'" "H2'" H 0 1 N N N 82.991 -24.483 -1.581 9.196 -1.380 6.971 "H2'" FYN 56
FYN HA HA H 0 1 N N N 84.782 -25.561 -2.432 8.680 -3.331 5.898 HA FYN 57
FYN "H3'" "H3'" H 0 1 N N N 84.464 -22.729 -2.492 7.526 -0.073 5.839 "H3'" FYN 58
FYN "H4'" "H4'" H 0 1 N N N 84.985 -21.382 -0.080 8.356 -1.438 3.224 "H4'" FYN 59
FYN "H5'1" "1H5'" H 0 0 N N N 83.407 -20.520 -1.783 7.320 1.372 3.823 "H5'1" FYN 60
FYN "H5'2" "2H5'" H 0 0 N N N 82.783 -20.339 -0.224 6.342 0.042 3.150 "H5'2" FYN 61
FYN H11 H11 H 0 1 N N N 79.611 -20.023 -2.811 4.862 1.699 0.378 H11 FYN 62
FYN H21 H21 H 0 1 N N N 83.823 -18.793 -5.328 9.280 4.321 0.600 H21 FYN 63
FYN HPB1 1HPB H 0 0 N N N 81.534 -18.721 -7.476 6.706 6.373 1.595 HPB1 FYN 64
FYN HPB2 2HPB H 0 0 N N N 81.811 -17.698 -6.170 5.516 5.145 2.071 HPB2 FYN 65
FYN HP7 HP7 H 0 1 N N N 79.220 -18.791 -4.486 5.494 5.866 5.184 HP7 FYN 66
FYN HP91 1HP9 H 0 0 N N N 79.968 -16.971 -8.345 5.983 8.746 4.458 HP91 FYN 67
FYN HP92 2HP9 H 0 0 N N N 80.220 -16.030 -6.974 6.943 8.557 2.988 HP92 FYN 68
FYN HP93 3HP9 H 0 0 N N N 78.473 -16.533 -7.340 7.271 7.534 4.389 HP93 FYN 69
FYN HP81 1HP8 H 0 0 N N N 79.006 -20.211 -6.534 4.939 8.297 1.624 HP81 FYN 70
FYN HP82 2HP8 H 0 0 N N N 79.219 -19.567 -8.071 3.835 8.414 2.996 HP82 FYN 71
FYN HP83 3HP8 H 0 0 N N N 77.778 -18.934 -7.088 3.755 7.022 1.899 HP83 FYN 72
FYN HP3 HP3 H 0 1 N N N 79.770 -16.688 -3.535 3.226 7.482 4.802 HP3 FYN 73
FYN HP2 HP2 H 0 1 N N N 78.547 -15.586 -4.523 5.246 4.162 3.280 HP2 FYN 74
FYN HP51 1HP5 H 0 0 N N N 75.693 -15.691 -3.850 2.459 3.414 2.743 HP51 FYN 75
FYN HP52 2HP5 H 0 0 N N N 75.743 -15.391 -5.489 3.915 2.654 2.098 HP52 FYN 76
FYN HP41 1HP4 H 0 0 N N N 77.550 -13.466 -5.078 2.920 2.404 4.994 HP41 FYN 77
FYN HP42 2HP4 H 0 0 N N N 77.467 -13.760 -3.421 4.391 1.654 4.360 HP42 FYN 78
FYN HP1 HP1 H 0 1 N N N 76.669 -11.911 -3.051 2.991 0.001 5.529 HP1 FYN 79
FYN HP21 1HP2 H 0 0 N N N 73.846 -11.257 -2.605 1.854 -1.683 3.427 HP21 FYN 80
FYN HP22 2HP2 H 0 0 N N N 74.238 -10.452 -3.996 2.360 -2.203 5.040 HP22 FYN 81
FYN HP11 1HP1 H 0 0 N N N 76.167 -10.384 -1.487 -0.190 -0.602 4.346 HP11 FYN 82
FYN HP12 2HP1 H 0 0 N N N 74.967 -9.228 -1.678 -0.130 -2.320 4.773 HP12 FYN 83
FYN HM1 HM1 H 0 1 N N N 78.339 -8.842 -1.419 -2.124 -1.278 5.925 HM1 FYN 84
FYN H32 H32 H 0 1 N N N 89.073 -23.298 -2.650 4.677 -3.984 7.036 H32 FYN 85
FYN H33 H33 H 0 1 N N N 87.396 -24.874 -3.761 5.436 -1.340 8.373 H33 FYN 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
FYN C8 N9 SING Y N 1
FYN N9 C4 SING Y N 2
FYN C4 C5 SING Y N 3
FYN C8 N7 DOUB Y N 4
FYN C5 N7 SING Y N 5
FYN C4 N3 DOUB Y N 6
FYN N3 C2 SING Y N 7
FYN C2 N1 DOUB Y N 8
FYN C5 C6 DOUB Y N 9
FYN N1 C6 SING Y N 10
FYN C6 N6 SING N N 11
FYN N9 "C1'" SING N N 12
FYN "C1'" "C2'" SING N N 13
FYN "C2'" "O2'" SING N N 14
FYN "C2'" "C3'" SING N N 15
FYN "C3'" "O3'" SING N N 16
FYN "C3'" "C4'" SING N N 17
FYN "C1'" "O4'" SING N N 18
FYN "C4'" "O4'" SING N N 19
FYN "C4'" "C5'" SING N N 20
FYN "C5'" "O5'" SING N N 21
FYN "O5'" P1 SING N N 22
FYN P1 O11 SING N N 23
FYN P1 O12 DOUB N N 24
FYN P1 O6 SING N N 25
FYN O6 P2 SING N N 26
FYN P2 O21 SING N N 27
FYN P2 O22 DOUB N N 28
FYN P2 O7 SING N N 29
FYN O7 CPB SING N N 30
FYN CPB CPA SING N N 31
FYN CPA CP7 SING N N 32
FYN CPA CP9 SING N N 33
FYN CPA CP8 SING N N 34
FYN CP7 OP3 SING N N 35
FYN CP7 CP6 SING N N 36
FYN CP6 OP2 DOUB N N 37
FYN CP6 NP2 SING N N 38
FYN NP2 CP5 SING N N 39
FYN CP5 CP4 SING N N 40
FYN CP4 CP3 SING N N 41
FYN CP3 OP1 DOUB N N 42
FYN CP3 NP1 SING N N 43
FYN NP1 CP2 SING N N 44
FYN CP2 CP1 SING N N 45
FYN CP1 S SING N N 46
FYN "O3'" P3 SING N N 47
FYN P3 O31 DOUB N N 48
FYN P3 O32 SING N N 49
FYN P3 O33 SING N N 50
FYN S CM1 SING N N 51
FYN CM1 OM2 DOUB N N 52
FYN C8 H8 SING N N 53
FYN "C1'" "H1'" SING N N 54
FYN C2 H2 SING N N 55
FYN N6 H6N1 SING N N 56
FYN N6 H6N2 SING N N 57
FYN "C2'" "H2'" SING N N 58
FYN "O2'" HA SING N N 59
FYN "C3'" "H3'" SING N N 60
FYN "C4'" "H4'" SING N N 61
FYN "C5'" "H5'1" SING N N 62
FYN "C5'" "H5'2" SING N N 63
FYN O11 H11 SING N N 64
FYN O21 H21 SING N N 65
FYN CPB HPB1 SING N N 66
FYN CPB HPB2 SING N N 67
FYN CP7 HP7 SING N N 68
FYN CP9 HP91 SING N N 69
FYN CP9 HP92 SING N N 70
FYN CP9 HP93 SING N N 71
FYN CP8 HP81 SING N N 72
FYN CP8 HP82 SING N N 73
FYN CP8 HP83 SING N N 74
FYN OP3 HP3 SING N N 75
FYN NP2 HP2 SING N N 76
FYN CP5 HP51 SING N N 77
FYN CP5 HP52 SING N N 78
FYN CP4 HP41 SING N N 79
FYN CP4 HP42 SING N N 80
FYN NP1 HP1 SING N N 81
FYN CP2 HP21 SING N N 82
FYN CP2 HP22 SING N N 83
FYN CP1 HP11 SING N N 84
FYN CP1 HP12 SING N N 85
FYN CM1 HM1 SING N N 86
FYN O32 H32 SING N N 87
FYN O33 H33 SING N N 88
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
FYN SMILES ACDLabs 10.04 "O=CSCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O"
FYN SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC=O"
FYN SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC=O"
FYN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC=O)O"
FYN SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC=O)O"
FYN InChI InChI 1.03
;InChI=1S/C22H36N7O17P3S/c1-22(2,17(33)20(34)25-4-3-13(31)24-5-6-50-11-30)8-43-49(40,41)46-48(38,39)42-7-12-16(45-47(35,36)37)15(32)21(44-12)29-10-28-14-18(23)26-9-27-19(14)29/h9-12,15-17,21,32-33H,3-8H2,1-2H3,(H,24,31)(H,25,34)(H,38,39)(H,40,41)(H2,23,26,27)(H2,35,36,37)/t12-,15-,16-,17+,21-/m1/s1
;
FYN InChIKey InChI 1.03 SXMOKYXNAPLNCW-GORZOVPNSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
FYN "SYSTEMATIC NAME" ACDLabs 10.04
"S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-9,13,15-trihydroxy-10,10-dimethyl-13,15-dioxido-4,8-dioxo-12,14,16-trioxa-3,7-diaza-13,15-diphosphaheptadec-1-yl} thioformate (non-preferred name)"
FYN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0
"S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethyl] methanethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
FYN "Create component" 2007-02-26 RCSB
FYN "Modify descriptor" 2011-06-04 RCSB
#