data_G # _chem_comp.id G _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.221 _chem_comp.one_letter_code G _chem_comp.three_letter_code G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G OP3 O3P O 0 1 N Y N N N N 34.313 3.314 -0.422 -1.945 -1.360 5.599 OP3 G 1 G P P P 0 1 N N N N N N 33.741 4.431 0.367 -0.911 -0.277 5.008 P G 2 G OP1 O1P O 0 1 N N N N N N 33.537 5.671 -0.451 -1.598 1.022 4.844 OP1 G 3 G OP2 O2P O 0 1 N N N N N N 34.442 4.727 1.661 0.325 -0.105 6.025 OP2 G 4 G "O5'" O5* O 0 1 N N N N N N 32.289 3.932 0.811 -0.365 -0.780 3.580 "O5'" G 5 G "C5'" C5* C 0 1 N N N N N N 32.101 2.551 1.198 0.542 0.217 3.109 "C5'" G 6 G "C4'" C4* C 0 1 N N R N N N 30.760 2.450 1.879 1.100 -0.200 1.748 "C4'" G 7 G "O4'" O4* O 0 1 N N N N N N 30.797 3.202 3.104 0.033 -0.318 0.782 "O4'" G 8 G "C3'" C3* C 0 1 N N S N N N 29.597 3.022 1.070 2.025 0.898 1.182 "C3'" G 9 G "O3'" O3* O 0 1 N N N N N N 29.106 2.045 0.152 3.395 0.582 1.439 "O3'" G 10 G "C2'" C2* C 0 1 N N R N N N 28.603 3.421 2.118 1.741 0.884 -0.338 "C2'" G 11 G "O2'" O2* O 0 1 N N N N N N 27.930 2.319 2.657 2.927 0.560 -1.066 "O2'" G 12 G "C1'" C1* C 0 1 N N R N N N 29.487 3.936 3.170 0.675 -0.220 -0.507 "C1'" G 13 G N9 N9 N 0 1 Y N N N N N 29.942 5.378 3.195 -0.297 0.162 -1.534 N9 G 14 G C8 C8 C 0 1 Y N N N N N 31.187 5.907 3.065 -1.440 0.880 -1.334 C8 G 15 G N7 N7 N 0 1 Y N N N N N 31.237 7.191 3.136 -2.066 1.037 -2.464 N7 G 16 G C5 C5 C 0 1 Y N N N N N 29.896 7.536 3.341 -1.364 0.431 -3.453 C5 G 17 G C6 C6 C 0 1 N N N N N N 29.331 8.813 3.503 -1.556 0.279 -4.846 C6 G 18 G O6 O6 O 0 1 N N N N N N 29.901 9.926 3.495 -2.534 0.755 -5.397 O6 G 19 G N1 N1 N 0 1 N N N N N N 27.948 8.749 3.683 -0.626 -0.401 -5.551 N1 G 20 G C2 C2 C 0 1 N N N N N N 27.233 7.615 3.707 0.459 -0.934 -4.923 C2 G 21 G N2 N2 N 0 1 N N N N N N 25.894 7.743 3.899 1.384 -1.626 -5.664 N2 G 22 G N3 N3 N 0 1 N N N N N N 27.758 6.393 3.559 0.649 -0.800 -3.630 N3 G 23 G C4 C4 C 0 1 Y N N N N N 29.079 6.431 3.382 -0.226 -0.134 -2.868 C4 G 24 G HOP3 3HOP H 0 0 N N N N N N 34.442 2.528 0.096 -2.247 -1.021 6.453 HOP3 G 25 G HOP2 2HOP H 0 0 N N N N N N 34.571 3.941 2.179 0.745 -0.973 6.104 HOP2 G 26 G "H5'" 1H5* H 0 1 N N N N N N 32.209 1.841 0.344 1.362 0.327 3.820 "H5'" G 27 G "H5''" 2H5* H 0 0 N N N N N N 32.936 2.156 1.822 0.018 1.168 3.011 "H5''" G 28 G "H4'" H4* H 0 1 N N N N N N 30.585 1.358 2.025 1.640 -1.144 1.833 "H4'" G 29 G "H3'" H3* H 0 1 N N N N N N 29.867 3.891 0.426 1.772 1.868 1.610 "H3'" G 30 G "HO3'" H3T H 0 0 N Y N N N N 28.382 2.400 -0.351 3.923 1.300 1.065 "HO3'" G 31 G "H2'" H2* H 0 1 N N N N N N 27.827 4.115 1.719 1.346 1.847 -0.662 "H2'" G 32 G "HO2'" 2HO* H 0 0 N N N N N N 27.299 2.572 3.321 3.573 1.254 -0.871 "HO2'" G 33 G "H1'" H1* H 0 1 N N N N N N 28.814 3.801 4.048 1.148 -1.167 -0.769 "H1'" G 34 G H8 H8 H 0 1 N N N N N N 32.110 5.323 2.909 -1.776 1.261 -0.381 H8 G 35 G H1 H1 H 0 1 N N N N N N 27.411 9.607 3.808 -0.736 -0.518 -6.508 H1 G 36 G H21 1H2 H 0 1 N N N N N N 25.350 6.880 3.917 2.165 -2.007 -5.232 H21 G 37 G H22 2H2 H 0 1 N N N N N N 25.507 8.377 3.200 1.256 -1.736 -6.619 H22 G 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G OP3 P SING N N 1 G OP3 HOP3 SING N N 2 G P OP1 DOUB N N 3 G P OP2 SING N N 4 G P "O5'" SING N N 5 G OP2 HOP2 SING N N 6 G "O5'" "C5'" SING N N 7 G "C5'" "C4'" SING N N 8 G "C5'" "H5'" SING N N 9 G "C5'" "H5''" SING N N 10 G "C4'" "O4'" SING N N 11 G "C4'" "C3'" SING N N 12 G "C4'" "H4'" SING N N 13 G "O4'" "C1'" SING N N 14 G "C3'" "O3'" SING N N 15 G "C3'" "C2'" SING N N 16 G "C3'" "H3'" SING N N 17 G "O3'" "HO3'" SING N N 18 G "C2'" "O2'" SING N N 19 G "C2'" "C1'" SING N N 20 G "C2'" "H2'" SING N N 21 G "O2'" "HO2'" SING N N 22 G "C1'" N9 SING N N 23 G "C1'" "H1'" SING N N 24 G N9 C8 SING Y N 25 G N9 C4 SING Y N 26 G C8 N7 DOUB Y N 27 G C8 H8 SING N N 28 G N7 C5 SING Y N 29 G C5 C6 SING N N 30 G C5 C4 DOUB Y N 31 G C6 O6 DOUB N N 32 G C6 N1 SING N N 33 G N1 C2 SING N N 34 G N1 H1 SING N N 35 G C2 N2 SING N N 36 G C2 N3 DOUB N N 37 G N2 H21 SING N N 38 G N2 H22 SING N N 39 G N3 C4 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(N)N1)C3OC(C(O)C3O)COP(=O)(O)O" G SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" G SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=C(NC2=O)N" G SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)O)N=C(NC2=O)N" G InChI InChI 1.03 "InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1" G InChIKey InChI 1.03 RQFCJASXJCIDSX-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G "SYSTEMATIC NAME" ACDLabs 10.04 ;5'-guanylic acid ; G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G "Create component" 1999-07-08 RCSB G "Modify descriptor" 2011-06-04 RCSB G "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id G _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type GMPylation _pdbx_chem_comp_pcm.category "Nucleotide monophosphate" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #