data_G09 # _chem_comp.id G09 _chem_comp.name "2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H31 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-14 _chem_comp.pdbx_modified_date 2021-04-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.578 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CJT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G09 C13 C1 C 0 1 N N R -42.659 10.123 -39.894 -0.342 1.484 0.132 C13 G09 1 G09 C17 C2 C 0 1 N N N -42.211 12.819 -40.667 2.217 1.941 -1.145 C17 G09 2 G09 C20 C3 C 0 1 Y N N -43.174 6.767 -38.032 -3.617 0.241 -1.274 C20 G09 3 G09 C21 C4 C 0 1 Y N N -43.452 7.212 -36.742 -4.435 0.289 -0.155 C21 G09 4 G09 C22 C5 C 0 1 Y N N -43.467 8.567 -36.491 -3.923 0.729 1.057 C22 G09 5 G09 C26 C6 C 0 1 Y N N -43.864 3.984 -34.780 -7.924 -0.479 0.656 C26 G09 6 G09 C28 C7 C 0 1 Y N N -45.153 2.734 -33.147 -10.165 0.008 -0.032 C28 G09 7 G09 C02 C8 C 0 1 N N N -46.049 15.900 -42.900 6.285 -1.483 -0.152 C02 G09 8 G09 C03 C9 C 0 1 Y N N -45.267 15.669 -44.147 6.782 -0.457 0.674 C03 G09 9 G09 C05 C10 C 0 1 Y N N -44.384 15.736 -46.154 7.921 0.953 1.968 C05 G09 10 G09 C06 C11 C 0 1 Y N N -43.786 14.694 -45.478 6.675 1.457 1.860 C06 G09 11 G09 C07 C12 C 0 1 Y N N -44.361 14.674 -44.219 5.923 0.584 1.043 C07 G09 12 G09 C09 C13 C 0 1 N N N -44.904 14.031 -41.844 4.202 -0.380 -0.167 C09 G09 13 G09 C11 C14 C 0 1 N N R -43.566 12.071 -40.858 2.025 0.763 -0.188 C11 G09 14 G09 C12 C15 C 0 1 N N N -43.713 11.103 -39.831 0.564 0.306 -0.234 C12 G09 15 G09 C14 C16 C 0 1 N N N -41.278 10.810 -39.648 -0.082 2.642 -0.835 C14 G09 16 G09 C16 C17 C 0 1 N N N -40.063 12.538 -40.296 1.583 4.240 -1.564 C16 G09 17 G09 C18 C18 C 0 1 Y N N -42.947 9.044 -38.786 -1.785 1.059 0.032 C18 G09 18 G09 C19 C19 C 0 1 Y N N -42.920 7.683 -39.054 -2.294 0.626 -1.178 C19 G09 19 G09 C23 C20 C 0 1 Y N N -43.230 9.473 -37.513 -2.601 1.118 1.147 C23 G09 20 G09 C25 C21 C 0 1 N N N -43.796 4.975 -35.990 -6.519 -0.018 0.947 C25 G09 21 G09 C27 C22 C 0 1 Y N N -45.091 3.648 -34.192 -8.878 0.431 0.241 C27 G09 22 G09 C29 C23 C 0 1 Y N N -43.990 2.133 -32.695 -10.498 -1.326 0.111 C29 G09 23 G09 C30 C24 C 0 1 Y N N -42.761 2.451 -33.264 -9.544 -2.237 0.525 C30 G09 24 G09 C31 C25 C 0 1 Y N N -42.706 3.364 -34.299 -8.257 -1.813 0.798 C31 G09 25 G09 C33 C26 C 0 1 N N N -46.642 15.331 -40.545 4.450 -2.471 -1.415 C33 G09 26 G09 C34 C27 C 0 1 N N N -47.419 14.071 -40.117 3.867 -3.566 -0.560 C34 G09 27 G09 C35 C28 C 0 1 N N N -47.790 13.846 -38.852 2.622 -3.938 -0.731 C35 G09 28 G09 N04 N1 N 0 1 Y N N -45.272 16.319 -45.327 8.006 -0.205 1.257 N04 G09 29 G09 N08 N2 N 0 1 N N N -44.150 13.819 -43.048 4.649 0.583 0.603 N08 G09 30 G09 N10 N3 N 0 1 N N N -44.622 13.135 -40.742 2.897 -0.343 -0.592 N10 G09 31 G09 N15 N4 N 0 1 N N N -41.079 11.914 -40.556 1.328 3.042 -0.753 N15 G09 32 G09 N32 N5 N 0 1 N N N -45.865 15.091 -41.760 4.997 -1.419 -0.555 N32 G09 33 G09 O01 O1 O 0 1 N N N -46.822 16.782 -42.921 7.002 -2.405 -0.501 O01 G09 34 G09 O24 O2 O 0 1 N N N -43.712 6.345 -35.671 -5.736 -0.094 -0.245 O24 G09 35 G09 H131 H1 H 0 0 N N N -42.645 9.630 -40.877 -0.127 1.806 1.151 H131 G09 36 G09 H171 H2 H 0 0 N N N -42.049 13.480 -41.531 3.253 2.278 -1.104 H171 G09 37 G09 H172 H3 H 0 0 N N N -42.269 13.423 -39.750 1.977 1.626 -2.161 H172 G09 38 G09 H201 H4 H 0 0 N N N -43.155 5.708 -38.243 -4.013 -0.102 -2.219 H201 G09 39 G09 H221 H5 H 0 0 N N N -43.665 8.925 -35.492 -4.558 0.768 1.930 H221 G09 40 G09 H281 H6 H 0 0 N N N -46.102 2.494 -32.690 -10.911 0.719 -0.356 H281 G09 41 G09 H051 H7 H 0 0 N N N -44.176 16.033 -47.171 8.727 1.398 2.531 H051 G09 42 G09 H061 H8 H 0 0 N N N -43.023 14.028 -45.854 6.316 2.366 2.318 H061 G09 43 G09 H111 H9 H 0 0 N N N -43.595 11.610 -41.856 2.278 1.073 0.826 H111 G09 44 G09 H121 H10 H 0 0 N N N -43.679 11.607 -38.854 0.414 -0.505 0.479 H121 G09 45 G09 H122 H11 H 0 0 N N N -44.683 10.597 -39.949 0.323 -0.041 -1.238 H122 G09 46 G09 H142 H12 H 0 0 N N N -40.477 10.071 -39.799 -0.311 2.323 -1.852 H142 G09 47 G09 H141 H13 H 0 0 N N N -41.242 11.184 -38.614 -0.716 3.487 -0.568 H141 G09 48 G09 H162 H14 H 0 0 N N N -39.215 11.842 -40.215 1.344 4.030 -2.607 H162 G09 49 G09 H161 H15 H 0 0 N N N -39.865 13.266 -41.097 0.962 5.061 -1.206 H161 G09 50 G09 H163 H16 H 0 0 N N N -40.193 13.070 -39.342 2.634 4.517 -1.482 H163 G09 51 G09 H191 H17 H 0 0 N N N -42.703 7.333 -40.052 -1.654 0.581 -2.047 H191 G09 52 G09 H231 H18 H 0 0 N N N -43.269 10.532 -37.305 -2.201 1.457 2.091 H231 G09 53 G09 H251 H19 H 0 0 N N N -44.702 4.827 -36.596 -6.541 1.013 1.303 H251 G09 54 G09 H252 H20 H 0 0 N N N -42.909 4.715 -36.587 -6.078 -0.657 1.713 H252 G09 55 G09 H271 H21 H 0 0 N N N -46.000 4.105 -34.555 -8.618 1.474 0.130 H271 G09 56 G09 H291 H22 H 0 0 N N N -44.038 1.411 -31.893 -11.504 -1.657 -0.102 H291 G09 57 G09 H301 H23 H 0 0 N N N -41.856 1.987 -32.899 -9.805 -3.279 0.636 H301 G09 58 G09 H311 H24 H 0 0 N N N -41.752 3.603 -34.745 -7.512 -2.524 1.122 H311 G09 59 G09 H332 H25 H 0 0 N N N -45.958 15.622 -39.734 5.245 -2.881 -2.038 H332 G09 60 G09 H331 H26 H 0 0 N N N -47.357 16.146 -40.732 3.670 -2.052 -2.051 H331 G09 61 G09 H1 H27 H 0 1 N N N -47.674 13.340 -40.869 4.475 -4.045 0.193 H1 G09 62 G09 H2 H28 H 0 1 N N N -48.334 12.947 -38.600 2.015 -3.460 -1.485 H2 G09 63 G09 H351 H29 H 0 0 N N N -47.546 14.563 -38.082 2.204 -4.723 -0.118 H351 G09 64 G09 H041 H30 H 0 0 N N N -45.844 17.108 -45.552 8.796 -0.761 1.174 H041 G09 65 G09 H101 H31 H 0 0 N N N -45.138 13.225 -39.890 2.552 -1.049 -1.161 H101 G09 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G09 C05 C06 DOUB Y N 1 G09 C05 N04 SING Y N 2 G09 C06 C07 SING Y N 3 G09 N04 C03 SING Y N 4 G09 C07 C03 DOUB Y N 5 G09 C07 N08 SING N N 6 G09 C03 C02 SING N N 7 G09 N08 C09 DOUB N N 8 G09 O01 C02 DOUB N N 9 G09 C02 N32 SING N N 10 G09 C09 N32 SING N N 11 G09 C09 N10 SING N N 12 G09 N32 C33 SING N N 13 G09 C11 N10 SING N N 14 G09 C11 C17 SING N N 15 G09 C11 C12 SING N N 16 G09 C17 N15 SING N N 17 G09 N15 C16 SING N N 18 G09 N15 C14 SING N N 19 G09 C33 C34 SING N N 20 G09 C34 C35 DOUB N N 21 G09 C13 C12 SING N N 22 G09 C13 C14 SING N N 23 G09 C13 C18 SING N N 24 G09 C19 C18 DOUB Y N 25 G09 C19 C20 SING Y N 26 G09 C18 C23 SING Y N 27 G09 C20 C21 DOUB Y N 28 G09 C23 C22 DOUB Y N 29 G09 C21 C22 SING Y N 30 G09 C21 O24 SING N N 31 G09 C25 O24 SING N N 32 G09 C25 C26 SING N N 33 G09 C26 C31 DOUB Y N 34 G09 C26 C27 SING Y N 35 G09 C31 C30 SING Y N 36 G09 C27 C28 DOUB Y N 37 G09 C30 C29 DOUB Y N 38 G09 C28 C29 SING Y N 39 G09 C13 H131 SING N N 40 G09 C17 H171 SING N N 41 G09 C17 H172 SING N N 42 G09 C20 H201 SING N N 43 G09 C22 H221 SING N N 44 G09 C28 H281 SING N N 45 G09 C05 H051 SING N N 46 G09 C06 H061 SING N N 47 G09 C11 H111 SING N N 48 G09 C12 H121 SING N N 49 G09 C12 H122 SING N N 50 G09 C14 H142 SING N N 51 G09 C14 H141 SING N N 52 G09 C16 H162 SING N N 53 G09 C16 H161 SING N N 54 G09 C16 H163 SING N N 55 G09 C19 H191 SING N N 56 G09 C23 H231 SING N N 57 G09 C25 H251 SING N N 58 G09 C25 H252 SING N N 59 G09 C27 H271 SING N N 60 G09 C29 H291 SING N N 61 G09 C30 H301 SING N N 62 G09 C31 H311 SING N N 63 G09 C33 H332 SING N N 64 G09 C33 H331 SING N N 65 G09 C34 H1 SING N N 66 G09 C35 H2 SING N N 67 G09 C35 H351 SING N N 68 G09 N04 H041 SING N N 69 G09 N10 H101 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G09 InChI InChI 1.03 "InChI=1S/C28H31N5O2/c1-3-15-33-27(34)26-25(13-14-29-26)31-28(33)30-23-16-22(17-32(2)18-23)21-9-11-24(12-10-21)35-19-20-7-5-4-6-8-20/h3-14,22-23,29H,1,15-19H2,2H3,(H,30,31)/t22-,23+/m0/s1" G09 InChIKey InChI 1.03 NBDJDKAXIGWAIM-XZOQPEGZSA-N G09 SMILES_CANONICAL CACTVS 3.385 "CN1C[C@@H](C[C@@H](C1)c2ccc(OCc3ccccc3)cc2)NC4=Nc5cc[nH]c5C(=O)N4CC=C" G09 SMILES CACTVS 3.385 "CN1C[CH](C[CH](C1)c2ccc(OCc3ccccc3)cc2)NC4=Nc5cc[nH]c5C(=O)N4CC=C" G09 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C[C@H](C[C@H](C1)NC2=Nc3cc[nH]c3C(=O)N2CC=C)c4ccc(cc4)OCc5ccccc5" G09 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CC(CC(C1)NC2=Nc3cc[nH]c3C(=O)N2CC=C)c4ccc(cc4)OCc5ccccc5" # _pdbx_chem_comp_identifier.comp_id G09 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G09 "Create component" 2020-07-14 PDBJ G09 "Modify linking type" 2021-04-02 PDBJ G09 "Modify formula" 2021-04-02 PDBJ G09 "Modify name" 2021-04-02 PDBJ G09 "Initial release" 2021-04-14 RCSB ##