data_G1C
#
_chem_comp.id G1C
_chem_comp.name "5'-O-[(R)-{[(S)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H17 Cl N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-09-11
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 539.653
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code G1C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3JPO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G1C N1 N1 N 0 1 N N N 1.975 3.350 0.098 -8.234 1.996 -0.023 N1 G1C 1
G1C C2 C2 C 0 1 N N N 2.241 2.016 -0.036 -7.670 1.614 1.158 C2 G1C 2
G1C N2 N2 N 0 1 N N N 2.608 1.488 -1.270 -8.324 1.898 2.331 N2 G1C 3
G1C N3 N3 N 0 1 N N N 2.132 1.177 1.029 -6.519 0.982 1.206 N3 G1C 4
G1C C4 C4 C 0 1 Y N N 1.743 1.673 2.229 -5.847 0.684 0.088 C4 G1C 5
G1C C5 C5 C 0 1 Y N N 1.443 3.020 2.391 -6.374 1.049 -1.156 C5 G1C 6
G1C C6 C6 C 0 1 N N N 1.565 3.879 1.286 -7.614 1.730 -1.193 C6 G1C 7
G1C O6 O6 O 0 1 N N N 1.300 5.098 1.380 -8.110 2.067 -2.254 O6 G1C 8
G1C N7 N7 N 0 1 Y N N 1.056 3.233 3.655 -5.499 0.630 -2.102 N7 G1C 9
G1C C8 C8 C 0 1 Y N N 1.126 2.029 4.256 -4.491 0.043 -1.527 C8 G1C 10
G1C N9 N9 N 0 1 Y N N 1.560 1.062 3.412 -4.661 0.052 -0.173 N9 G1C 11
G1C PA PA P 0 1 N N N 2.712 2.133 7.967 1.824 -1.542 -0.748 PA G1C 12
G1C PB PB P 0 1 N N N 1.103 2.228 10.172 4.458 -0.214 -0.461 PB G1C 13
G1C PG PG P 0 1 N N N -1.765 2.352 9.720 6.769 1.567 0.131 PG G1C 14
G1C "C1'" "C1'" C 0 1 N N R 1.763 -0.339 3.690 -3.743 -0.512 0.820 "C1'" G1C 15
G1C O1A O1A O 0 1 N N N 2.983 3.221 6.951 1.553 -1.424 -2.331 O1A G1C 16
G1C O1B O1B O 0 1 N N N 2.176 2.818 11.060 4.834 -0.182 -2.027 O1B G1C 17
G1C O1G O1G O 0 1 N N N -1.597 2.587 8.238 7.145 1.599 -1.435 O1G G1C 18
G1C "C2'" "C2'" C 0 1 N N N 3.197 -0.843 3.374 -4.184 -1.942 1.189 "C2'" G1C 19
G1C O2A O2A O 0 1 N N N 3.877 2.014 8.868 2.386 -2.877 -0.442 O2A G1C 20
G1C O2B O2B O 0 1 N N N 1.024 0.773 10.407 5.160 -1.342 0.191 O2B G1C 21
G1C O2G O2G O 0 1 N N N -3.012 3.065 10.193 7.220 2.950 0.819 O2G G1C 22
G1C "C3'" "C3'" C 0 1 N N S 3.582 -1.653 4.619 -2.959 -2.819 0.835 "C3'" G1C 23
G1C "O3'" "O3'" O 0 1 N N N 3.246 -3.030 4.455 -2.741 -3.818 1.834 "O3'" G1C 24
G1C O3A O3A O 0 1 N N N 1.446 2.512 8.719 2.868 -0.403 -0.296 O3A G1C 25
G1C C3B C3B C 0 1 N N S -0.402 2.983 10.574 4.968 1.352 0.319 C3B G1C 26
G1C CL3B CL3B CL 0 0 N N N -0.276 4.718 10.295 4.547 1.316 2.071 CL3B G1C 27
G1C O3G O3G O 0 1 N N N -1.907 0.905 9.983 7.471 0.439 0.783 O3G G1C 28
G1C "C4'" "C4'" C 0 1 N N R 2.710 -1.013 5.720 -1.807 -1.782 0.829 "C4'" G1C 29
G1C "O4'" "O4'" O 0 1 N N N 1.482 -0.674 5.063 -2.420 -0.602 0.266 "O4'" G1C 30
G1C "C5'" "C5'" C 0 1 N N N 3.361 0.224 6.399 -0.654 -2.263 -0.054 "C5'" G1C 31
G1C "O5'" "O5'" O 0 1 N N N 2.492 0.818 7.232 0.439 -1.348 0.049 "O5'" G1C 32
G1C HN1 HN1 H 0 1 N N N 2.084 3.952 -0.693 -9.087 2.458 -0.023 HN1 G1C 33
G1C HN2 HN2 H 0 1 N N N 2.786 0.508 -1.362 -9.174 2.364 2.312 HN2 G1C 34
G1C HN2A HN2A H 0 0 N N N 2.694 2.088 -2.065 -7.935 1.633 3.179 HN2A G1C 35
G1C H8 H8 H 0 1 N N N 0.866 1.855 5.290 -3.645 -0.387 -2.043 H8 G1C 36
G1C "H1'" "H1'" H 0 1 N N N 1.052 -0.840 3.017 -3.733 0.114 1.712 "H1'" G1C 37
G1C "H2'" "H2'" H 0 1 N N N 3.213 -1.467 2.468 -4.407 -2.010 2.254 "H2'" G1C 38
G1C "H2'A" "H2'A" H 0 0 N N N 3.890 -0.005 3.210 -5.050 -2.239 0.597 "H2'A" G1C 39
G1C "H3'" "H3'" H 0 1 N N N 4.660 -1.630 4.837 -3.078 -3.275 -0.148 "H3'" G1C 40
G1C "HO3'" "HO3'" H 0 0 N N N 3.493 -3.512 5.236 -3.476 -4.437 1.938 "HO3'" G1C 41
G1C H3B H3B H 0 1 N N N -0.585 2.763 11.636 4.451 2.183 -0.162 H3B G1C 42
G1C "H4'" "H4'" H 0 1 N N N 2.566 -1.715 6.555 -1.460 -1.588 1.844 "H4'" G1C 43
G1C "H5'" "H5'" H 0 1 N N N 4.242 -0.102 6.971 -0.333 -3.251 0.275 "H5'" G1C 44
G1C "H5'A" "H5'A" H 0 0 N N N 3.664 0.942 5.623 -0.987 -2.316 -1.090 "H5'A" G1C 45
G1C H14 H14 H 0 1 N N N 3.842 3.595 7.108 1.183 -0.573 -2.604 H14 G1C 46
G1C H15 H15 H 0 1 N N N 2.572 2.129 11.580 4.409 0.534 -2.519 H15 G1C 47
G1C H16 H16 H 0 1 N N N -1.617 1.755 7.781 6.720 2.315 -1.927 H16 G1C 48
G1C H17 H17 H 0 1 N N N -3.620 2.433 10.558 8.168 3.130 0.757 H17 G1C 49
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G1C N1 C2 SING N N 1
G1C N1 C6 SING N N 2
G1C N1 HN1 SING N N 3
G1C C2 N2 SING N N 4
G1C C2 N3 DOUB N N 5
G1C N2 HN2 SING N N 6
G1C N2 HN2A SING N N 7
G1C N3 C4 SING N N 8
G1C C4 C5 DOUB Y N 9
G1C C4 N9 SING Y N 10
G1C C5 C6 SING N N 11
G1C C5 N7 SING Y N 12
G1C C6 O6 DOUB N N 13
G1C N7 C8 DOUB Y N 14
G1C C8 N9 SING Y N 15
G1C C8 H8 SING N N 16
G1C N9 "C1'" SING N N 17
G1C PA O1A SING N N 18
G1C PA O2A DOUB N N 19
G1C PA O3A SING N N 20
G1C PA "O5'" SING N N 21
G1C PB O1B SING N N 22
G1C PB O2B DOUB N N 23
G1C PB O3A SING N N 24
G1C PB C3B SING N N 25
G1C PG O1G SING N N 26
G1C PG O2G SING N N 27
G1C PG C3B SING N N 28
G1C PG O3G DOUB N N 29
G1C "C1'" "C2'" SING N N 30
G1C "C1'" "O4'" SING N N 31
G1C "C1'" "H1'" SING N N 32
G1C "C2'" "C3'" SING N N 33
G1C "C2'" "H2'" SING N N 34
G1C "C2'" "H2'A" SING N N 35
G1C "C3'" "O3'" SING N N 36
G1C "C3'" "C4'" SING N N 37
G1C "C3'" "H3'" SING N N 38
G1C "O3'" "HO3'" SING N N 39
G1C C3B CL3B SING N N 40
G1C C3B H3B SING N N 41
G1C "C4'" "O4'" SING N N 42
G1C "C4'" "C5'" SING N N 43
G1C "C4'" "H4'" SING N N 44
G1C "C5'" "O5'" SING N N 45
G1C "C5'" "H5'" SING N N 46
G1C "C5'" "H5'A" SING N N 47
G1C O1A H14 SING N N 48
G1C O1B H15 SING N N 49
G1C O1G H16 SING N N 50
G1C O2G H17 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G1C SMILES ACDLabs 11.02 "O=P(O)(O)C(Cl)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"
G1C SMILES_CANONICAL CACTVS 3.352 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@@H](Cl)[P](O)(O)=O)O3"
G1C SMILES CACTVS 3.352 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[CH](Cl)[P](O)(O)=O)O3"
G1C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)([C@H](P(=O)(O)O)Cl)O)O)N=C(NC2=O)N"
G1C SMILES "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(C(P(=O)(O)O)Cl)O)O)N=C(NC2=O)N"
G1C InChI InChI 1.03
"InChI=1S/C11H17ClN5O12P3/c12-10(30(20,21)22)31(23,24)29-32(25,26)27-2-5-4(18)1-6(28-5)17-3-14-7-8(17)15-11(13)16-9(7)19/h3-6,10,18H,1-2H2,(H,23,24)(H,25,26)(H2,20,21,22)(H3,13,15,16,19)/t4-,5+,6+,10-/m0/s1"
G1C InChIKey InChI 1.03 GBPRSSRXOIDBNV-KQQCLRPBSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G1C "SYSTEMATIC NAME" ACDLabs 11.02 "5'-O-[(R)-{[(S)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine"
G1C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(S)-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-chloro-methyl]phosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G1C "Create component" 2009-09-11 RCSB
G1C "Modify descriptor" 2011-06-04 RCSB
#