data_G2B # _chem_comp.id G2B _chem_comp.name "1-[(2~{R},3~{S})-2-azanyl-3-oxidanyl-butyl]urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H13 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-22 _chem_comp.pdbx_modified_date 2020-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.176 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G2B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HF8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G2B N1 N1 N 0 1 N N N -7.734 52.986 13.378 1.023 1.762 0.374 N1 G2B 1 G2B C2 C1 C 0 1 N N N -9.639 54.494 13.760 -0.157 -0.371 0.143 C2 G2B 2 G2B N2 N2 N 0 1 N N N -8.681 55.448 14.264 -1.350 0.384 -0.249 N2 G2B 3 G2B CA C2 C 0 1 N N R -9.052 53.423 12.900 1.095 0.425 -0.230 CA G2B 4 G2B C C3 C 0 1 N N N -9.005 56.703 14.460 -2.576 -0.126 -0.016 C G2B 5 G2B O O1 O 0 1 N N N -10.063 57.185 14.069 -2.692 -1.212 0.518 O G2B 6 G2B CB C4 C 0 1 N N S -10.165 52.399 13.085 2.336 -0.303 0.289 CB G2B 7 G2B CG C5 C 0 1 N N N -11.455 52.755 12.350 3.589 0.493 -0.084 CG G2B 8 G2B OG1 O2 O 0 1 N N N -10.387 52.361 14.514 2.406 -1.604 -0.299 OG1 G2B 9 G2B H1 H1 H 0 1 N N N -7.064 53.712 13.220 0.248 2.288 -0.002 H1 G2B 10 G2B H2 H2 H 0 1 N N N -7.784 52.786 14.356 0.966 1.702 1.379 H2 G2B 11 G2B H4 H4 H 0 1 N N N -10.388 55.039 13.167 -0.172 -0.541 1.219 H4 G2B 12 G2B H5 H5 H 0 1 N N N -10.131 54.014 14.619 -0.147 -1.329 -0.377 H5 G2B 13 G2B H6 H6 H 0 1 N N N -7.750 55.145 14.468 -1.258 1.250 -0.675 H6 G2B 14 G2B H7 H7 H 0 1 N N N -9.004 53.749 11.851 1.156 0.519 -1.315 H7 G2B 15 G2B H9 H9 H 0 1 N N N -9.812 51.419 12.732 2.275 -0.397 1.373 H9 G2B 16 G2B H10 H10 H 0 1 N N N -12.208 51.973 12.530 3.535 1.485 0.364 H10 G2B 17 G2B H11 H11 H 0 1 N N N -11.833 53.720 12.719 4.473 -0.026 0.286 H11 G2B 18 G2B H12 H12 H 0 1 N N N -11.254 52.829 11.271 3.649 0.586 -1.168 H12 G2B 19 G2B H13 H13 H 0 1 N N N -9.576 52.138 14.955 2.463 -1.597 -1.264 H13 G2B 20 G2B N3 N3 N 0 1 N Y N -8.085 57.327 15.193 -3.674 0.568 -0.377 N3 G2B 21 G2B H3 H3 H 0 1 N N N -8.228 58.276 15.473 -3.581 1.435 -0.803 H3 G2B 22 G2B H8 H8 H 0 1 N N N -7.251 56.846 15.463 -4.556 0.202 -0.209 H8 G2B 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G2B CG CB SING N N 1 G2B CA CB SING N N 2 G2B CA N1 SING N N 3 G2B CA C2 SING N N 4 G2B CB OG1 SING N N 5 G2B C2 N2 SING N N 6 G2B O C DOUB N N 7 G2B N2 C SING N N 8 G2B N1 H1 SING N N 9 G2B N1 H2 SING N N 10 G2B C2 H4 SING N N 11 G2B C2 H5 SING N N 12 G2B N2 H6 SING N N 13 G2B CA H7 SING N N 14 G2B CB H9 SING N N 15 G2B CG H10 SING N N 16 G2B CG H11 SING N N 17 G2B CG H12 SING N N 18 G2B OG1 H13 SING N N 19 G2B C N3 SING N N 20 G2B N3 H3 SING N N 21 G2B N3 H8 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G2B InChI InChI 1.03 "InChI=1S/C5H13N3O2/c1-3(9)4(6)2-8-5(7)10/h3-4,9H,2,6H2,1H3,(H3,7,8,10)/t3-,4+/m0/s1" G2B InChIKey InChI 1.03 DMDDGYOTJFLDRR-IUYQGCFVSA-N G2B SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)[C@H](N)CNC(N)=O" G2B SMILES CACTVS 3.385 "C[CH](O)[CH](N)CNC(N)=O" G2B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]([C@@H](CNC(=O)N)N)O" G2B SMILES "OpenEye OEToolkits" 2.0.6 "CC(C(CNC(=O)N)N)O" # _pdbx_chem_comp_identifier.comp_id G2B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "1-[(2~{R},3~{S})-2-azanyl-3-oxidanyl-butyl]urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G2B "Create component" 2018-08-22 EBI G2B "Initial release" 2020-07-08 RCSB ##