data_G2F # _chem_comp.id G2F _chem_comp.name 2-deoxy-2-fluoro-alpha-D-glucopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H11 F O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-deoxy-2-fluoro-alpha-D-glucose; 2-deoxy-2-fluoro-D-glucose; 2-deoxy-2-fluoro-glucose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 182.147 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EXP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 G2F 2-deoxy-2-fluoro-alpha-D-glucose PDB ? 2 G2F 2-deoxy-2-fluoro-D-glucose PDB ? 3 G2F 2-deoxy-2-fluoro-glucose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G2F C1 C1 C 0 1 N N S N N N 21.498 68.515 37.192 -0.546 1.565 -0.248 C1 G2F 1 G2F C2 C2 C 0 1 N N R N N N 20.776 69.651 37.894 -1.553 0.454 -0.556 C2 G2F 2 G2F C3 C3 C 0 1 N N S N N N 20.006 68.902 38.975 -1.149 -0.814 0.204 C3 G2F 3 G2F C4 C4 C 0 1 N N S N N N 19.009 67.892 38.354 0.280 -1.199 -0.190 C4 G2F 4 G2F C5 C5 C 0 1 N N R N N N 19.764 66.940 37.429 1.216 -0.023 0.103 C5 G2F 5 G2F C6 C6 C 0 1 N N N N N N 18.856 66.024 36.616 2.636 -0.377 -0.343 C6 G2F 6 G2F O1 O1 O 0 1 N Y N N N N 22.717 67.779 37.324 -0.581 1.867 1.148 O1 G2F 7 G2F O3 O3 O 0 1 N N N N N N 19.329 69.802 39.822 -2.041 -1.878 -0.134 O3 G2F 8 G2F O4 O4 O 0 1 N N N N N N 18.397 67.155 39.407 0.694 -2.338 0.566 O4 G2F 9 G2F O5 O5 O 0 1 N N N N N N 20.557 67.707 36.490 0.766 1.131 -0.610 O5 G2F 10 G2F O6 O6 O 0 1 N N N N N N 17.666 66.694 36.216 3.530 0.671 0.035 O6 G2F 11 G2F F2 F2 F 0 1 N N N N N N 21.161 70.978 37.958 -2.830 0.854 -0.151 F2 G2F 12 G2F H1 H1 H 0 1 N N N N N N 22.204 69.345 37.037 -0.804 2.457 -0.819 H1 G2F 13 G2F H2 H2 H 0 1 N N N N N N 20.201 70.299 37.216 -1.556 0.251 -1.627 H2 G2F 14 G2F H3 H3 H 0 1 N N N N N N 20.735 68.338 39.575 -1.194 -0.626 1.276 H3 G2F 15 G2F H4 H4 H 0 1 N N N N N N 18.240 68.423 37.773 0.314 -1.435 -1.254 H4 G2F 16 G2F H5 H5 H 0 1 N N N N N N 20.383 66.311 38.085 1.213 0.186 1.173 H5 G2F 17 G2F H61 H61 H 0 1 N N N N N N 19.397 65.695 35.717 2.945 -1.308 0.133 H61 G2F 18 G2F H62 H62 H 0 1 N N N N N N 18.584 65.155 37.233 2.657 -0.499 -1.426 H62 G2F 19 G2F HO1 HO1 H 0 1 N Y N N N N 22.769 67.126 36.636 0.033 2.565 1.415 HO1 G2F 20 G2F HO3 HO3 H 0 1 N Y N N N N 18.856 69.316 40.488 -2.966 -1.699 0.082 HO3 G2F 21 G2F HO4 HO4 H 0 1 N Y N N N N 17.782 66.530 39.041 0.141 -3.121 0.433 HO4 G2F 22 G2F HO6 HO6 H 0 1 N N N N N N 17.122 66.100 35.713 4.450 0.514 -0.217 HO6 G2F 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G2F C1 C2 SING N N 1 G2F C1 O1 SING N N 2 G2F C1 O5 SING N N 3 G2F C1 H1 SING N N 4 G2F C2 C3 SING N N 5 G2F C2 F2 SING N N 6 G2F C2 H2 SING N N 7 G2F C3 C4 SING N N 8 G2F C3 O3 SING N N 9 G2F C3 H3 SING N N 10 G2F C4 C5 SING N N 11 G2F C4 O4 SING N N 12 G2F C4 H4 SING N N 13 G2F C5 C6 SING N N 14 G2F C5 O5 SING N N 15 G2F C5 H5 SING N N 16 G2F C6 O6 SING N N 17 G2F C6 H61 SING N N 18 G2F C6 H62 SING N N 19 G2F O1 HO1 SING N N 20 G2F O3 HO3 SING N N 21 G2F O4 HO4 SING N N 22 G2F O6 HO6 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G2F SMILES ACDLabs 12.01 "FC1C(O)C(O)C(OC1O)CO" G2F SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H](O)[C@H](F)[C@@H](O)[C@@H]1O" G2F SMILES CACTVS 3.370 "OC[CH]1O[CH](O)[CH](F)[CH](O)[CH]1O" G2F SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)F)O)O)O" G2F SMILES "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(C(O1)O)F)O)O)O" G2F InChI InChI 1.03 "InChI=1S/C6H11FO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1H2/t2-,3-,4-,5-,6+/m1/s1" G2F InChIKey InChI 1.03 ZCXUVYAZINUVJD-UKFBFLRUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G2F "SYSTEMATIC NAME" ACDLabs 12.01 2-deoxy-2-fluoro-alpha-D-glucopyranose G2F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R,4S,5S,6R)-3-fluoro-6-(hydroxymethyl)oxane-2,4,5-triol" G2F "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Glcp2fluoro # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support G2F "CARBOHYDRATE ISOMER" D PDB ? G2F "CARBOHYDRATE RING" pyranose PDB ? G2F "CARBOHYDRATE ANOMER" alpha PDB ? G2F "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G2F "Create component" 1999-07-08 RCSB G2F "Modify name" 2011-01-04 RCSB G2F "Modify descriptor" 2011-06-04 RCSB G2F "Other modification" 2020-07-03 RCSB G2F "Modify synonyms" 2020-07-17 RCSB G2F "Modify linking type" 2020-07-17 RCSB G2F "Modify leaving atom flag" 2020-07-17 RCSB G2F "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 G2F ASP None Carbohydrate "Amino-acid side chain" "Any position" C1 OD1 ? ? 2 G2F ASP None Carbohydrate "Amino-acid side chain" "Any position" C1 OD2 ? ? 3 G2F GLU None Carbohydrate "Amino-acid side chain" "Any position" C1 OE1 ? ? 4 G2F GLU None Carbohydrate "Amino-acid side chain" "Any position" C1 OE2 ? ? #