data_G2P # _chem_comp.id G2P _chem_comp.name "PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-08-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1W58 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G2P PG PG P 0 1 N N N 4.755 36.871 1.293 -4.641 0.532 4.833 PG G2P 1 G2P O1G O1G O 0 1 N N N 4.715 37.452 2.633 -3.160 -0.078 5.052 O1G G2P 2 G2P O2G O2G O 0 1 N N N 3.922 37.646 0.382 -5.476 0.603 6.078 O2G G2P 3 G2P O3G O3G O 0 1 N N N 4.077 35.479 1.293 -5.251 -0.385 3.650 O3G G2P 4 G2P O3B O3B O 0 1 N N N 6.326 36.708 0.845 -4.367 1.954 4.119 O3B G2P 5 G2P PB PB P 0 1 N N R 6.923 36.150 -0.599 -5.360 3.062 3.495 PB G2P 6 G2P O1B O1B O 0 1 N N N 8.123 35.342 -0.364 -5.898 2.375 2.136 O1B G2P 7 G2P O2B O2B O 0 1 N N N 6.021 35.475 -1.495 -6.429 3.563 4.419 O2B G2P 8 G2P C3A C3A C 0 1 N N N 7.527 37.631 -1.370 -4.231 4.341 2.900 C3A G2P 9 G2P PA PA P 0 1 N N S 7.431 37.652 -3.159 -2.920 4.063 1.687 PA G2P 10 G2P O1A O1A O 0 1 N N N 7.741 36.355 -3.793 -3.696 3.307 0.487 O1A G2P 11 G2P O2A O2A O 0 1 N N N 6.256 38.366 -3.671 -2.184 5.303 1.271 O2A G2P 12 G2P "O5'" O5* O 0 1 N N N 8.765 38.486 -3.322 -2.015 2.891 2.334 "O5'" G2P 13 G2P "C5'" C5* C 0 1 N N N 8.993 39.776 -2.831 -0.881 2.428 1.621 "C5'" G2P 14 G2P "C4'" C4* C 0 1 N N R 10.373 40.252 -3.352 -0.199 1.333 2.429 "C4'" G2P 15 G2P "O4'" O4* O 0 1 N N N 10.816 39.438 -4.501 -1.128 0.236 2.584 "O4'" G2P 16 G2P "C3'" C3* C 0 1 N N S 10.266 41.711 -3.808 1.032 0.761 1.734 "C3'" G2P 17 G2P "O3'" O3* O 0 1 N N N 10.868 42.521 -2.790 1.918 0.238 2.725 "O3'" G2P 18 G2P "C2'" C2* C 0 1 N N R 10.965 41.727 -5.174 0.447 -0.380 0.926 "C2'" G2P 19 G2P "O2'" O2* O 0 1 N N N 12.290 42.200 -5.087 1.399 -1.370 0.596 "O2'" G2P 20 G2P "C1'" C1* C 0 1 N N R 10.976 40.282 -5.676 -0.616 -0.910 1.877 "C1'" G2P 21 G2P N9 N9 N 0 1 Y N N 9.855 40.015 -6.637 -1.713 -1.611 1.213 N9 G2P 22 G2P C8 C8 C 0 1 Y N N 8.483 40.172 -6.463 -2.843 -1.031 0.688 C8 G2P 23 G2P N7 N7 N 0 1 Y N N 7.748 39.850 -7.475 -3.659 -1.916 0.150 N7 G2P 24 G2P C5 C5 C 0 1 Y N N 8.671 39.434 -8.445 -3.023 -3.107 0.340 C5 G2P 25 G2P C6 C6 C 0 1 Y N N 8.478 38.945 -9.808 -3.448 -4.424 -0.044 C6 G2P 26 G2P O6 O6 O 0 1 N N N 7.417 38.784 -10.437 -4.500 -4.657 -0.626 O6 G2P 27 G2P N1 N1 N 0 1 Y N N 9.699 38.635 -10.437 -2.501 -5.385 0.338 N1 G2P 28 G2P C2 C2 C 0 1 Y N N 10.960 38.762 -9.860 -1.287 -5.112 1.010 C2 G2P 29 G2P N2 N2 N 0 1 N N N 12.030 38.420 -10.602 -0.510 -6.207 1.286 N2 G2P 30 G2P N3 N3 N 0 1 Y N N 11.135 39.212 -8.595 -0.922 -3.895 1.351 N3 G2P 31 G2P C4 C4 C 0 1 Y N N 9.974 39.531 -7.941 -1.822 -2.953 0.991 C4 G2P 32 G2P H3A1 1H3A H 0 0 N N N 8.572 37.837 -1.039 -3.751 4.775 3.785 H3A1 G2P 33 G2P H3A2 2H3A H 0 0 N N N 7.008 38.523 -0.947 -4.865 5.131 2.480 H3A2 G2P 34 G2P "H5'1" 1H5* H 0 0 N N N 8.908 39.836 -1.721 -1.208 2.042 0.651 "H5'1" G2P 35 G2P "H5'2" 2H5* H 0 0 N N N 8.170 40.485 -3.083 -0.199 3.269 1.460 "H5'2" G2P 36 G2P "H4'" H4* H 0 1 N N N 11.125 40.175 -2.532 0.033 1.713 3.429 "H4'" G2P 37 G2P "H3'" H3* H 0 1 N N N 9.194 41.991 -3.929 1.592 1.484 1.136 "H3'" G2P 38 G2P HA HA H 0 1 N N N 10.802 43.425 -3.073 2.578 0.927 2.893 HA G2P 39 G2P "H2'" H2* H 0 1 N N N 10.386 42.364 -5.883 -0.005 0.000 0.002 "H2'" G2P 40 G2P HB HB H 0 1 N N N 12.723 42.210 -5.933 2.066 -0.951 0.024 HB G2P 41 G2P "H1'" H1* H 0 1 N N N 11.953 40.062 -6.167 -0.213 -1.625 2.603 "H1'" G2P 42 G2P H8 H8 H 0 1 N N N 8.051 40.548 -5.520 -3.012 0.037 0.729 H8 G2P 43 G2P H1 H1 H 0 1 N N N 9.656 38.289 -11.395 -2.704 -6.355 0.113 H1 G2P 44 G2P H2N1 1H2N H 0 0 N N N 12.954 38.513 -10.179 0.044 -6.196 2.110 H2N1 G2P 45 G2P H2N2 2H2N H 0 0 N N N 11.898 38.081 -11.555 -0.532 -6.972 0.651 H2N2 G2P 46 G2P HO1 HO1 H 0 1 N N N 4.706 36.756 3.280 -3.059 -0.905 5.571 HO1 G2P 47 G2P HO2 HO2 H 0 1 N N N 3.938 35.194 0.397 -6.192 -0.272 3.399 HO2 G2P 48 G2P HO3 HO3 H 0 1 N N N 7.808 36.470 -4.734 -3.203 3.080 -0.329 HO3 G2P 49 G2P HO4 HO4 H 0 1 N N N 8.555 35.167 -1.192 -6.563 1.657 2.197 HO4 G2P 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G2P PG O1G SING N N 1 G2P PG O2G DOUB N N 2 G2P PG O3G SING N N 3 G2P PG O3B SING N N 4 G2P O3B PB SING N N 5 G2P PB O1B SING N N 6 G2P PB O2B DOUB N N 7 G2P PB C3A SING N N 8 G2P C3A PA SING N N 9 G2P C3A H3A1 SING N N 10 G2P C3A H3A2 SING N N 11 G2P PA O1A SING N N 12 G2P PA O2A DOUB N N 13 G2P PA "O5'" SING N N 14 G2P "O5'" "C5'" SING N N 15 G2P "C5'" "C4'" SING N N 16 G2P "C5'" "H5'1" SING N N 17 G2P "C5'" "H5'2" SING N N 18 G2P "C4'" "O4'" SING N N 19 G2P "C4'" "C3'" SING N N 20 G2P "C4'" "H4'" SING N N 21 G2P "O4'" "C1'" SING N N 22 G2P "C3'" "O3'" SING N N 23 G2P "C3'" "C2'" SING N N 24 G2P "C3'" "H3'" SING N N 25 G2P "O3'" HA SING N N 26 G2P "C2'" "O2'" SING N N 27 G2P "C2'" "C1'" SING N N 28 G2P "C2'" "H2'" SING N N 29 G2P "O2'" HB SING N N 30 G2P "C1'" N9 SING N N 31 G2P "C1'" "H1'" SING N N 32 G2P N9 C8 SING Y N 33 G2P N9 C4 SING Y N 34 G2P C8 N7 DOUB Y N 35 G2P C8 H8 SING N N 36 G2P N7 C5 SING Y N 37 G2P C5 C6 SING Y N 38 G2P C5 C4 DOUB Y N 39 G2P C6 O6 DOUB N N 40 G2P C6 N1 SING Y N 41 G2P N1 C2 SING Y N 42 G2P N1 H1 SING N N 43 G2P C2 N2 SING N N 44 G2P C2 N3 DOUB Y N 45 G2P N2 H2N1 SING N N 46 G2P N2 H2N2 SING N N 47 G2P N3 C4 SING Y N 48 G2P HO1 O1G SING N N 49 G2P HO2 O3G SING N N 50 G2P HO3 O1A SING N N 51 G2P HO4 O1B SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G2P SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" G2P SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)C[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" G2P SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" G2P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(C[P@@](=O)(O)OP(=O)(O)O)O)O)O)N=C(NC2=O)N" G2P SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N=C(NC2=O)N" G2P InChI InChI 1.03 "InChI=1S/C11H18N5O13P3/c12-11-14-8-5(9(19)15-11)13-2-16(8)10-7(18)6(17)4(28-10)1-27-30(20,21)3-31(22,23)29-32(24,25)26/h2,4,6-7,10,17-18H,1,3H2,(H,20,21)(H,22,23)(H2,24,25,26)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1" G2P InChIKey InChI 1.03 GXTIEXDFEKYVGY-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G2P "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine" G2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]methyl-phosphonooxy-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G2P "Create component" 2004-08-06 EBI G2P "Modify descriptor" 2011-06-04 RCSB #