data_G31 # _chem_comp.id G31 _chem_comp.name "3'-METHYL-2',3'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1992-07-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.248 _chem_comp.one_letter_code G _chem_comp.three_letter_code G31 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1D26 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G31 O3P O3P O 0 1 N Y N 29.669 34.333 20.616 -1.560 -0.953 -4.790 O3P G31 1 G31 P P P 0 1 N N N 28.361 33.822 20.727 -0.783 0.293 -4.965 P G31 2 G31 O1P O1P O 0 1 N N N 27.599 33.583 21.950 -1.742 1.445 -5.553 O1P G31 3 G31 O2P O2P O 0 1 N N N 27.409 34.861 19.903 0.430 0.031 -5.990 O2P G31 4 G31 "O5'" O5* O 0 1 N N N 28.253 32.505 19.783 -0.192 0.762 -3.542 "O5'" G31 5 G31 "C5'" C5* C 0 1 N N N 29.318 31.522 19.680 0.645 -0.296 -3.074 "C5'" G31 6 G31 "C4'" C4* C 0 1 N N S 28.803 30.531 18.625 1.242 0.086 -1.719 "C4'" G31 7 G31 "O4'" O4* O 0 1 N N N 28.634 31.193 17.404 0.191 0.283 -0.744 "O4'" G31 8 G31 "C3'" C3* C 0 1 N N S 29.782 29.405 18.383 2.092 -1.071 -1.150 "C3'" G31 9 G31 "C2'" C2* C 0 1 N N N 29.730 29.184 16.887 1.816 -1.033 0.368 "C2'" G31 10 G31 "C1'" C1* C 0 1 N N R 29.336 30.526 16.338 0.832 0.145 0.542 "C1'" G31 11 G31 N9 N9 N 0 1 Y N N 30.544 31.250 15.913 -0.157 -0.165 1.577 N9 G31 12 G31 C8 C8 C 0 1 Y N N 31.089 32.397 16.414 -1.362 -0.775 1.384 C8 G31 13 G31 N7 N7 N 0 1 Y N N 32.181 32.778 15.793 -1.984 -0.893 2.520 N7 G31 14 G31 C5 C5 C 0 1 Y N N 32.323 31.838 14.773 -1.218 -0.367 3.507 C5 G31 15 G31 C6 C6 C 0 1 N N N 33.246 31.739 13.707 -1.376 -0.221 4.905 C6 G31 16 G31 O6 O6 O 0 1 N N N 34.220 32.449 13.471 -2.384 -0.617 5.465 O6 G31 17 G31 N1 N1 N 0 1 N N N 33.051 30.674 12.853 -0.382 0.368 5.606 N1 G31 18 G31 C2 C2 C 0 1 N N N 32.003 29.834 13.050 0.740 0.807 4.970 C2 G31 19 G31 N2 N2 N 0 1 N N N 31.912 28.872 12.113 1.733 1.402 5.707 N2 G31 20 G31 N3 N3 N 0 1 N N N 31.068 29.868 14.008 0.900 0.677 3.672 N3 G31 21 G31 C4 C4 C 0 1 Y N N 31.293 30.921 14.815 -0.039 0.098 2.914 C4 G31 22 G31 C3M C3M C 0 1 N N N 29.375 28.206 19.243 3.577 -0.833 -1.432 C3M G31 23 G31 H1P H1P H 0 1 N N N 26.716 33.238 22.024 -2.074 1.125 -6.403 H1P G31 24 G31 H2P H2P H 0 1 N N N 26.526 34.516 19.977 0.909 0.866 -6.075 H2P G31 25 G31 "H5'1" 1H5* H 0 0 N N N 29.605 31.053 20.650 1.450 -0.465 -3.790 "H5'1" G31 26 G31 "H5'2" 2H5* H 0 0 N N N 30.321 31.953 19.454 0.056 -1.206 -2.968 "H5'2" G31 27 G31 "H4'" H4* H 0 1 N N N 27.826 30.109 18.957 1.846 0.989 -1.812 "H4'" G31 28 G31 "H3'" H3* H 0 1 N N N 30.806 29.737 18.672 1.771 -2.023 -1.573 "H3'" G31 29 G31 "H2'1" 1H2* H 0 0 N N N 29.067 28.345 16.569 1.357 -1.965 0.697 "H2'1" G31 30 G31 "H2'2" 2H2* H 0 0 N N N 30.668 28.767 16.451 2.738 -0.845 0.919 "H2'2" G31 31 G31 "H1'" H1* H 0 1 N N N 28.654 30.390 15.467 1.373 1.056 0.796 "H1'" G31 32 G31 H8 H8 H 0 1 N N N 30.653 32.952 17.261 -1.743 -1.110 0.430 H8 G31 33 G31 H1 H1 H 0 1 N N N 33.692 30.518 12.075 -0.468 0.480 6.565 H1 G31 34 G31 H2N1 1H2N H 0 0 N N N 31.125 28.241 12.261 2.538 1.719 5.269 H2N1 G31 35 G31 H2N2 2H2N H 0 0 N N N 32.624 28.846 11.383 1.630 1.505 6.666 H2N2 G31 36 G31 H3M1 1H3M H 0 0 N N N 30.097 27.375 19.065 4.163 -1.642 -0.995 H3M1 G31 37 G31 H3M2 2H3M H 0 0 N N N 28.318 27.896 19.070 3.743 -0.805 -2.509 H3M2 G31 38 G31 H3M3 3H3M H 0 0 N N N 29.284 28.467 20.323 3.883 0.115 -0.992 H3M3 G31 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G31 O3P P DOUB N N 1 G31 P O1P SING N N 2 G31 P O2P SING N N 3 G31 P "O5'" SING N N 4 G31 O1P H1P SING N N 5 G31 O2P H2P SING N N 6 G31 "O5'" "C5'" SING N N 7 G31 "C5'" "C4'" SING N N 8 G31 "C5'" "H5'1" SING N N 9 G31 "C5'" "H5'2" SING N N 10 G31 "C4'" "O4'" SING N N 11 G31 "C4'" "C3'" SING N N 12 G31 "C4'" "H4'" SING N N 13 G31 "O4'" "C1'" SING N N 14 G31 "C3'" "C2'" SING N N 15 G31 "C3'" C3M SING N N 16 G31 "C3'" "H3'" SING N N 17 G31 "C2'" "C1'" SING N N 18 G31 "C2'" "H2'1" SING N N 19 G31 "C2'" "H2'2" SING N N 20 G31 "C1'" N9 SING N N 21 G31 "C1'" "H1'" SING N N 22 G31 N9 C8 SING Y N 23 G31 N9 C4 SING Y N 24 G31 C8 N7 DOUB Y N 25 G31 C8 H8 SING N N 26 G31 N7 C5 SING Y N 27 G31 C5 C6 SING N N 28 G31 C5 C4 DOUB Y N 29 G31 C6 O6 DOUB N N 30 G31 C6 N1 SING N N 31 G31 N1 C2 SING N N 32 G31 N1 H1 SING N N 33 G31 C2 N2 SING N N 34 G31 C2 N3 DOUB N N 35 G31 N2 H2N1 SING N N 36 G31 N2 H2N2 SING N N 37 G31 N3 C4 SING N N 38 G31 C3M H3M1 SING N N 39 G31 C3M H3M2 SING N N 40 G31 C3M H3M3 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G31 SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(N)N1)C3OC(C(C3)C)COP(=O)(O)O" G31 SMILES_CANONICAL CACTVS 3.341 "C[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)N" G31 SMILES CACTVS 3.341 "C[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)N" G31 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1C[C@@H](O[C@@H]1COP(=O)(O)O)n2cnc3c2N=C(NC3=O)N" G31 SMILES "OpenEye OEToolkits" 1.5.0 "CC1CC(OC1COP(=O)(O)O)n2cnc3c2N=C(NC3=O)N" G31 InChI InChI 1.03 "InChI=1S/C11H16N5O6P/c1-5-2-7(22-6(5)3-21-23(18,19)20)16-4-13-8-9(16)14-11(12)15-10(8)17/h4-7H,2-3H2,1H3,(H2,18,19,20)(H3,12,14,15,17)/t5-,6+,7+/m0/s1" G31 InChIKey InChI 1.03 VFWJQBRJIASDIP-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G31 "SYSTEMATIC NAME" ACDLabs 10.04 ;2',3'-dideoxy-3'-methylguanosine 5'-(dihydrogen phosphate) ; G31 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-methyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G31 "Create component" 1992-07-15 RCSB G31 "Modify descriptor" 2011-06-04 RCSB #