data_G3D # _chem_comp.id G3D _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-09-23 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.180 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G3D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MR3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G3D PB PB P 0 1 N N N 6.332 19.459 -0.504 -2.057 -0.159 5.869 PB G3D 1 G3D O1B O1B O 0 1 N N N 7.584 18.920 0.087 -2.311 1.290 5.718 O1B G3D 2 G3D O2B O2B O 0 1 N N N 5.269 19.726 0.366 -3.263 -0.832 6.696 O2B G3D 3 G3D O3B O3B O 0 1 N N N 6.690 20.722 -1.452 -0.673 -0.382 6.662 O3B G3D 4 G3D PA PA P 0 1 N N S 4.252 17.695 -1.632 -0.737 -0.124 3.647 PA G3D 5 G3D O3A O3A O 0 1 N N N 5.766 18.378 -1.491 -1.957 -0.841 4.414 O3A G3D 6 G3D O1A O1A O 0 1 N N N 3.867 16.939 -0.401 -1.011 1.325 3.530 O1A G3D 7 G3D O2A O2A O 0 1 N N N 3.335 18.838 -2.017 0.624 -0.347 4.477 O2A G3D 8 G3D "O5'" O5* O 0 1 N N N 4.545 16.706 -2.795 -0.580 -0.760 2.176 "O5'" G3D 9 G3D "C5'" C5* C 0 1 N N N 4.997 17.170 -4.101 0.512 -0.086 1.549 "C5'" G3D 10 G3D "C4'" C4* C 0 1 N N R 4.601 16.314 -5.219 0.717 -0.647 0.140 "C4'" G3D 11 G3D "O4'" O4* O 0 1 N N N 5.183 14.951 -5.000 -0.460 -0.424 -0.664 "O4'" G3D 12 G3D "C3'" C3* C 0 1 N N S 3.064 15.974 -5.297 1.843 0.118 -0.587 "C3'" G3D 13 G3D "O3'" O3* O 0 1 N N N 2.809 15.761 -6.738 3.073 -0.605 -0.509 "O3'" G3D 14 G3D "C2'" C2* C 0 1 N N R 2.860 14.632 -4.544 1.355 0.202 -2.052 "C2'" G3D 15 G3D "O2'" O2* O 0 1 N N N 1.691 13.842 -4.809 2.270 -0.465 -2.924 "O2'" G3D 16 G3D "C1'" C1* C 0 1 N N R 4.150 13.869 -4.929 -0.009 -0.520 -2.033 "C1'" G3D 17 G3D N9 N9 N 0 1 Y N N 4.633 12.857 -3.962 -0.954 0.150 -2.929 N9 G3D 18 G3D C8 C8 C 0 1 Y N N 4.735 13.208 -2.506 -1.784 1.183 -2.601 C8 G3D 19 G3D N7 N7 N 0 1 Y N N 5.224 11.941 -2.153 -2.485 1.532 -3.640 N7 G3D 20 G3D C5 C5 C 0 1 Y N N 5.415 10.990 -3.073 -2.150 0.746 -4.692 C5 G3D 21 G3D C6 C6 C 0 1 N N N 5.839 9.664 -3.318 -2.575 0.670 -6.039 C6 G3D 22 G3D O6 O6 O 0 1 N N N 6.249 8.976 -2.250 -3.429 1.427 -6.469 O6 G3D 23 G3D N1 N1 N 0 1 N N N 5.860 9.071 -4.536 -2.007 -0.258 -6.840 N1 G3D 24 G3D C2 C2 C 0 1 N N N 5.398 9.873 -5.713 -1.058 -1.103 -6.347 C2 G3D 25 G3D N2 N2 N 0 1 N N N 5.495 9.120 -6.802 -0.503 -2.040 -7.182 N2 G3D 26 G3D N3 N3 N 0 1 N N N 5.008 11.065 -5.546 -0.654 -1.042 -5.098 N3 G3D 27 G3D C4 C4 C 0 1 Y N N 5.008 11.609 -4.317 -1.167 -0.145 -4.248 C4 G3D 28 G3D P1 P1 P 0 1 N N N 1.494 16.353 -7.447 4.127 0.347 0.247 P1 G3D 29 G3D O4P O4P O 0 1 N N N 1.741 17.799 -7.647 5.542 -0.409 0.371 O4P G3D 30 G3D O5P O5P O 0 1 N N N 0.268 15.905 -6.708 4.317 1.709 -0.591 O5P G3D 31 G3D O6P O6P O 0 1 N N N 1.489 15.641 -8.870 3.619 0.668 1.600 O6P G3D 32 G3D HOB2 2HOB H 0 0 N N N 4.468 20.070 -0.011 -3.288 -0.396 7.559 HOB2 G3D 33 G3D HOB3 3HOB H 0 0 N N N 5.889 21.066 -1.829 -0.546 -1.337 6.739 HOB3 G3D 34 G3D HOA2 2HOA H 0 0 N N N 2.472 18.448 -2.097 0.765 -1.302 4.530 HOA2 G3D 35 G3D "H5'1" 1H5* H 0 0 N N N 4.662 18.218 -4.277 1.418 -0.239 2.136 "H5'1" G3D 36 G3D "H5'2" 2H5* H 0 0 N N N 6.101 17.319 -4.098 0.295 0.979 1.488 "H5'2" G3D 37 G3D "H4'" H4* H 0 1 N N N 4.932 16.879 -6.120 0.949 -1.711 0.186 "H4'" G3D 38 G3D "H3'" H3* H 0 1 N N N 2.400 16.757 -4.862 1.961 1.116 -0.165 "H3'" G3D 39 G3D "H2'" H2* H 0 1 N N N 2.682 14.842 -3.463 1.231 1.242 -2.355 "H2'" G3D 40 G3D "HO2'" *HO2 H 0 0 N N N 1.566 13.020 -4.348 1.915 -0.380 -3.819 "HO2'" G3D 41 G3D "H1'" H1* H 0 1 N N N 3.951 13.289 -5.860 0.109 -1.564 -2.321 "H1'" G3D 42 G3D H8 H8 H 0 1 N N N 4.521 14.102 -1.896 -1.848 1.642 -1.626 H8 G3D 43 G3D HN1 HN1 H 0 1 N N N 6.193 8.107 -4.564 -2.282 -0.329 -7.767 HN1 G3D 44 G3D HN21 1HN2 H 0 0 N N N 5.180 9.666 -7.603 0.176 -2.646 -6.847 HN21 G3D 45 G3D HN22 2HN2 H 0 0 N N N 4.995 8.235 -6.711 -0.793 -2.100 -8.106 HN22 G3D 46 G3D HO4P HO4P H 0 0 N N N 0.963 18.149 -8.066 6.143 0.194 0.828 HO4P G3D 47 G3D HO5P HO5P H 0 0 N N N -0.509 16.255 -7.127 4.648 1.455 -1.463 HO5P G3D 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G3D PB O1B DOUB N N 1 G3D PB O2B SING N N 2 G3D PB O3B SING N N 3 G3D PB O3A SING N N 4 G3D O2B HOB2 SING N N 5 G3D O3B HOB3 SING N N 6 G3D PA O3A SING N N 7 G3D PA O1A DOUB N N 8 G3D PA O2A SING N N 9 G3D PA "O5'" SING N N 10 G3D O2A HOA2 SING N N 11 G3D "O5'" "C5'" SING N N 12 G3D "C5'" "C4'" SING N N 13 G3D "C5'" "H5'1" SING N N 14 G3D "C5'" "H5'2" SING N N 15 G3D "C4'" "O4'" SING N N 16 G3D "C4'" "C3'" SING N N 17 G3D "C4'" "H4'" SING N N 18 G3D "O4'" "C1'" SING N N 19 G3D "C3'" "O3'" SING N N 20 G3D "C3'" "C2'" SING N N 21 G3D "C3'" "H3'" SING N N 22 G3D "O3'" P1 SING N N 23 G3D "C2'" "O2'" SING N N 24 G3D "C2'" "C1'" SING N N 25 G3D "C2'" "H2'" SING N N 26 G3D "O2'" "HO2'" SING N N 27 G3D "C1'" N9 SING N N 28 G3D "C1'" "H1'" SING N N 29 G3D N9 C8 SING Y N 30 G3D N9 C4 SING Y N 31 G3D C8 N7 DOUB Y N 32 G3D C8 H8 SING N N 33 G3D N7 C5 SING Y N 34 G3D C5 C6 SING N N 35 G3D C5 C4 DOUB Y N 36 G3D C6 O6 DOUB N N 37 G3D C6 N1 SING N N 38 G3D N1 C2 SING N N 39 G3D N1 HN1 SING N N 40 G3D C2 N2 SING N N 41 G3D C2 N3 DOUB N N 42 G3D N2 HN21 SING N N 43 G3D N2 HN22 SING N N 44 G3D N3 C4 SING N N 45 G3D P1 O4P SING N N 46 G3D P1 O5P SING N N 47 G3D P1 O6P DOUB N N 48 G3D O4P HO4P SING N N 49 G3D O5P HO5P SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G3D SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3OP(=O)(O)O" G3D SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]3O" G3D SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]3O" G3D SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)OP(=O)(O)O)O)N=C(NC2=O)N" G3D SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)O)N=C(NC2=O)N" G3D InChI InChI 1.03 "InChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(28-30(18,19)20)3(27-9)1-26-32(24,25)29-31(21,22)23/h2-3,5-6,9,16H,1H2,(H,24,25)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1" G3D InChIKey InChI 1.03 HEYSFDAMRDTCJM-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G3D "SYSTEMATIC NAME" ACDLabs 10.04 ;guanosine 3'-(dihydrogen phosphate) 5'-(trihydrogen diphosphate) ; G3D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G3D "Create component" 2002-09-23 RCSB G3D "Modify descriptor" 2011-06-04 RCSB #