data_G3I # _chem_comp.id G3I _chem_comp.name "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranoside" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C24 H43 N O18" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cellotetraose-like isofagomine; Cellotriosyl isofagomine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-04-17 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 633.594 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G3I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3CUG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G3I O24 O24 O 0 1 N N N 9.056 62.127 44.190 -6.490 2.799 -1.112 O24 G3I 1 G3I C24 C24 C 0 1 N N R 8.481 60.813 44.087 -6.773 1.413 -0.907 C24 G3I 2 G3I C34 C34 C 0 1 N N S 8.791 59.990 45.341 -8.074 1.269 -0.111 C34 G3I 3 G3I O34 O34 O 0 1 N N N 8.301 60.673 46.507 -9.160 1.804 -0.869 O34 G3I 4 G3I C44 C44 C 0 1 N N S 8.146 58.594 45.246 -8.326 -0.215 0.170 C44 G3I 5 G3I O44 O44 O 0 1 N N N 8.714 57.742 46.253 -9.498 -0.357 0.975 O44 G3I 6 G3I C54 C54 C 0 1 N N R 8.304 57.949 43.840 -7.122 -0.798 0.914 C54 G3I 7 G3I C64 C64 C 0 1 N N N 7.198 56.902 43.676 -7.340 -2.295 1.145 C64 G3I 8 G3I O64 O64 O 0 1 N N N 7.645 55.649 44.214 -6.272 -2.814 1.940 O64 G3I 9 G3I O54 O54 O 0 1 N N N 8.241 58.861 42.680 -5.941 -0.604 0.133 O54 G3I 10 G3I C14 C14 C 0 1 N N S 9.019 60.069 42.855 -5.629 0.768 -0.122 C14 G3I 11 G3I O43 O43 O 0 1 N N N 8.987 60.940 41.690 -4.423 0.848 -0.883 O43 G3I 12 G3I C43 C43 C 0 1 N N S 10.152 60.897 40.805 -3.265 0.374 -0.192 C43 G3I 13 G3I C53 C53 C 0 1 N N R 11.544 61.253 41.413 -2.029 1.130 -0.686 C53 G3I 14 G3I O53 O53 O 0 1 N N N 12.525 61.216 40.353 -0.866 0.614 -0.035 O53 G3I 15 G3I C63 C63 C 0 1 N N N 12.115 60.309 42.478 -2.177 2.618 -0.362 C63 G3I 16 G3I O63 O63 O 0 1 N N N 12.457 59.054 41.864 -1.079 3.339 -0.924 O63 G3I 17 G3I C33 C33 C 0 1 N N R 9.824 61.939 39.706 -3.083 -1.122 -0.466 C33 G3I 18 G3I O33 O33 O 0 1 N N N 8.681 61.512 38.950 -4.200 -1.844 0.058 O33 G3I 19 G3I C23 C23 C 0 1 N N R 10.986 62.202 38.728 -1.798 -1.602 0.216 C23 G3I 20 G3I O23 O23 O 0 1 N N N 10.753 63.428 38.032 -1.579 -2.980 -0.093 O23 G3I 21 G3I C13 C13 C 0 1 N N S 12.342 62.290 39.425 -0.618 -0.770 -0.294 C13 G3I 22 G3I O42 O42 O 0 1 N N N 13.282 62.078 38.381 0.576 -1.174 0.379 O42 G3I 23 G3I C42 C42 C 0 1 N N S 14.577 62.616 38.754 1.760 -0.535 -0.103 C42 G3I 24 G3I C52 C52 C 0 1 N N R 14.899 63.736 37.748 2.957 -1.473 0.076 C52 G3I 25 G3I O52 O52 O 0 1 N N N 16.297 64.093 37.840 4.148 -0.810 -0.353 O52 G3I 26 G3I C62 C62 C 0 1 N N N 14.025 65.003 37.996 2.745 -2.736 -0.761 C62 G3I 27 G3I O62 O62 O 0 1 N N N 14.455 65.746 39.155 3.804 -3.660 -0.504 O62 G3I 28 G3I C32 C32 C 0 1 N N R 15.603 61.458 38.736 2.006 0.752 0.690 C32 G3I 29 G3I O32 O32 O 0 1 N N N 15.432 60.644 39.897 0.928 1.663 0.470 O32 G3I 30 G3I C22 C22 C 0 1 N N R 17.045 61.965 38.683 3.318 1.387 0.218 C22 G3I 31 G3I O22 O22 O 0 1 N N N 17.944 60.886 38.411 3.595 2.550 1.001 O22 G3I 32 G3I C12 C12 C 0 1 N N R 17.136 62.981 37.548 4.454 0.375 0.385 C12 G3I 33 G3I O41 O41 O 0 1 N N N 18.476 63.453 37.588 5.672 0.940 -0.106 O41 G3I 34 G3I C41 C41 C 0 1 N N R 18.851 64.332 36.488 6.821 0.118 0.105 C41 G3I 35 G3I C31 C31 C 0 1 N N R 19.845 65.360 37.042 7.012 -0.812 -1.096 C31 G3I 36 G3I O31 O31 O 0 1 N N N 19.180 66.047 38.085 5.883 -1.679 -1.213 O31 G3I 37 G3I C21 C21 C 0 1 N N N 20.303 66.423 35.999 8.279 -1.647 -0.892 C21 G3I 38 G3I N11 N11 N 0 1 N N N 20.724 65.769 34.732 9.437 -0.755 -0.751 N11 G3I 39 G3I C71 C71 C 0 1 N N N 19.812 64.713 34.196 9.297 0.114 0.424 C71 G3I 40 G3I C51 C51 C 0 1 N N R 19.505 63.654 35.277 8.061 1.002 0.259 C51 G3I 41 G3I C61 C61 C 0 1 N N N 18.655 62.516 34.679 7.904 1.892 1.494 C61 G3I 42 G3I O61 O61 O 0 1 N N N 17.401 62.984 34.160 9.007 2.798 1.572 O61 G3I 43 G3I HO24 HO24 H 0 0 N N N 9.183 62.347 45.105 -5.678 2.964 -1.611 HO24 G3I 44 G3I H24 H24 H 0 1 N N N 7.393 60.936 43.986 -6.880 0.916 -1.872 H24 G3I 45 G3I H34 H34 H 0 1 N N N 9.882 59.869 45.419 -7.986 1.810 0.832 H34 G3I 46 G3I HO34 HO34 H 0 0 N N N 8.193 60.051 47.217 -9.063 2.740 -1.089 HO34 G3I 47 G3I H44 H44 H 0 1 N N N 7.065 58.714 45.413 -8.465 -0.746 -0.772 H44 G3I 48 G3I HO44 HO44 H 0 0 N N N 8.839 56.870 45.897 -10.301 -0.004 0.566 HO44 G3I 49 G3I H54 H54 H 0 1 N N N 9.324 57.538 43.826 -7.009 -0.294 1.874 H54 G3I 50 G3I H64 H64 H 0 1 N N N 6.297 57.232 44.214 -8.286 -2.448 1.663 H64 G3I 51 G3I H64A H64A H 0 0 N N N 6.962 56.781 42.608 -7.363 -2.811 0.185 H64A G3I 52 G3I HO64 HO64 H 0 0 N N N 7.744 55.019 43.510 -6.345 -3.760 2.126 HO64 G3I 53 G3I H14 H14 H 0 1 N N N 10.072 59.782 42.994 -5.497 1.292 0.825 H14 G3I 54 G3I H43 H43 H 0 1 N N N 10.282 59.853 40.485 -3.388 0.537 0.878 H43 G3I 55 G3I H53 H53 H 0 1 N N N 11.366 62.226 41.893 -1.930 1.000 -1.764 H53 G3I 56 G3I H63 H63 H 0 1 N N N 13.015 60.758 42.924 -3.111 2.990 -0.783 H63 G3I 57 G3I H63A H63A H 0 0 N N N 11.364 60.143 43.265 -2.186 2.755 0.720 H63A G3I 58 G3I HO63 HO63 H 0 0 N N N 12.532 59.171 40.924 -1.108 4.291 -0.758 HO63 G3I 59 G3I H33 H33 H 0 1 N N N 9.625 62.881 40.238 -3.012 -1.290 -1.541 H33 G3I 60 G3I HO33 HO33 H 0 0 N N N 7.934 61.418 39.530 -4.151 -2.799 -0.081 HO33 G3I 61 G3I H23 H23 H 0 1 N N N 11.019 61.348 38.036 -1.891 -1.481 1.295 H23 G3I 62 G3I HO23 HO23 H 0 0 N N N 10.701 64.142 38.656 -0.781 -3.351 0.307 HO23 G3I 63 G3I H13 H13 H 0 1 N N N 12.440 63.243 39.965 -0.501 -0.924 -1.366 H13 G3I 64 G3I H42 H42 H 0 1 N N N 14.599 63.046 39.766 1.640 -0.295 -1.159 H42 G3I 65 G3I H52 H52 H 0 1 N N N 14.672 63.354 36.741 3.051 -1.745 1.128 H52 G3I 66 G3I H62 H62 H 0 1 N N N 14.099 65.657 37.114 1.792 -3.192 -0.495 H62 G3I 67 G3I H62A H62A H 0 0 N N N 12.991 64.671 38.171 2.740 -2.473 -1.819 H62A G3I 68 G3I HO62 HO62 H 0 0 N N N 14.550 65.155 39.893 3.735 -4.486 -1.002 HO62 G3I 69 G3I H32 H32 H 0 1 N N N 15.418 60.870 37.825 2.074 0.518 1.753 H32 G3I 70 G3I HO32 HO32 H 0 0 N N N 15.394 59.730 39.641 1.018 2.502 0.943 HO32 G3I 71 G3I H22 H22 H 0 1 N N N 17.318 62.416 39.648 3.229 1.667 -0.831 H22 G3I 72 G3I HO22 HO22 H 0 0 N N N 18.143 60.866 37.482 4.413 3.003 0.756 HO22 G3I 73 G3I H12 H12 H 0 1 N N N 16.846 62.539 36.583 4.568 0.127 1.440 H12 G3I 74 G3I H41 H41 H 0 1 N N N 17.911 64.763 36.112 6.682 -0.477 1.008 H41 G3I 75 G3I H31 H31 H 0 1 N N N 20.746 64.816 37.363 7.110 -0.217 -2.004 H31 G3I 76 G3I HO31 HO31 H 0 0 N N N 19.031 65.453 38.811 5.937 -2.297 -1.955 HO31 G3I 77 G3I H21 H21 H 0 1 N N N 19.466 67.105 35.790 8.174 -2.252 0.009 H21 G3I 78 G3I H21A H21A H 0 0 N N N 21.158 66.979 36.412 8.426 -2.300 -1.753 H21A G3I 79 G3I HN11 HN11 H 0 0 N N N 20.790 66.485 34.037 10.296 -1.283 -0.710 HN11 G3I 80 G3I H71 H71 H 0 1 N N N 18.870 65.182 33.875 9.187 -0.499 1.319 H71 G3I 81 G3I H71A H71A H 0 0 N N N 20.305 64.218 33.346 10.184 0.741 0.520 H71A G3I 82 G3I H51 H51 H 0 1 N N N 20.436 63.189 35.634 8.177 1.625 -0.627 H51 G3I 83 G3I H61 H61 H 0 1 N N N 19.221 62.052 33.858 6.975 2.457 1.418 H61 G3I 84 G3I H61A H61A H 0 0 N N N 18.440 61.798 35.484 7.880 1.271 2.389 H61A G3I 85 G3I HO61 HO61 H 0 0 N N N 16.782 63.087 34.873 8.973 3.395 2.332 HO61 G3I 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G3I O24 C24 SING N N 1 G3I C24 C34 SING N N 2 G3I C24 C14 SING N N 3 G3I C34 O34 SING N N 4 G3I C34 C44 SING N N 5 G3I C44 O44 SING N N 6 G3I C44 C54 SING N N 7 G3I C54 C64 SING N N 8 G3I C54 O54 SING N N 9 G3I C64 O64 SING N N 10 G3I O54 C14 SING N N 11 G3I C14 O43 SING N N 12 G3I O43 C43 SING N N 13 G3I C43 C53 SING N N 14 G3I C43 C33 SING N N 15 G3I C53 O53 SING N N 16 G3I C53 C63 SING N N 17 G3I O53 C13 SING N N 18 G3I C63 O63 SING N N 19 G3I C33 O33 SING N N 20 G3I C33 C23 SING N N 21 G3I C23 O23 SING N N 22 G3I C23 C13 SING N N 23 G3I C13 O42 SING N N 24 G3I O42 C42 SING N N 25 G3I C42 C52 SING N N 26 G3I C42 C32 SING N N 27 G3I C52 O52 SING N N 28 G3I C52 C62 SING N N 29 G3I O52 C12 SING N N 30 G3I C62 O62 SING N N 31 G3I C32 O32 SING N N 32 G3I C32 C22 SING N N 33 G3I C22 O22 SING N N 34 G3I C22 C12 SING N N 35 G3I C12 O41 SING N N 36 G3I O41 C41 SING N N 37 G3I C41 C31 SING N N 38 G3I C41 C51 SING N N 39 G3I C31 O31 SING N N 40 G3I C31 C21 SING N N 41 G3I C21 N11 SING N N 42 G3I N11 C71 SING N N 43 G3I C71 C51 SING N N 44 G3I C51 C61 SING N N 45 G3I C61 O61 SING N N 46 G3I O24 HO24 SING N N 47 G3I C24 H24 SING N N 48 G3I C34 H34 SING N N 49 G3I O34 HO34 SING N N 50 G3I C44 H44 SING N N 51 G3I O44 HO44 SING N N 52 G3I C54 H54 SING N N 53 G3I C64 H64 SING N N 54 G3I C64 H64A SING N N 55 G3I O64 HO64 SING N N 56 G3I C14 H14 SING N N 57 G3I C43 H43 SING N N 58 G3I C53 H53 SING N N 59 G3I C63 H63 SING N N 60 G3I C63 H63A SING N N 61 G3I O63 HO63 SING N N 62 G3I C33 H33 SING N N 63 G3I O33 HO33 SING N N 64 G3I C23 H23 SING N N 65 G3I O23 HO23 SING N N 66 G3I C13 H13 SING N N 67 G3I C42 H42 SING N N 68 G3I C52 H52 SING N N 69 G3I C62 H62 SING N N 70 G3I C62 H62A SING N N 71 G3I O62 HO62 SING N N 72 G3I C32 H32 SING N N 73 G3I O32 HO32 SING N N 74 G3I C22 H22 SING N N 75 G3I O22 HO22 SING N N 76 G3I C12 H12 SING N N 77 G3I C41 H41 SING N N 78 G3I C31 H31 SING N N 79 G3I O31 HO31 SING N N 80 G3I C21 H21 SING N N 81 G3I C21 H21A SING N N 82 G3I N11 HN11 SING N N 83 G3I C71 H71 SING N N 84 G3I C71 H71A SING N N 85 G3I C51 H51 SING N N 86 G3I C61 H61 SING N N 87 G3I C61 H61A SING N N 88 G3I O61 HO61 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G3I SMILES ACDLabs 10.04 "O(C2C(OC(OC1C(CO)CNCC1O)C(O)C2O)CO)C4OC(C(OC3OC(CO)C(O)C(O)C3O)C(O)C4O)CO" G3I SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1CNC[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O" G3I SMILES CACTVS 3.341 "OC[CH]1CNC[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O[CH]3O[CH](CO)[CH](O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O)[CH](O)[CH]2O" G3I SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H](CN1)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O)O)O)CO" G3I SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(CN1)O)OC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)OC4C(C(C(C(O4)CO)O)O)O)O)O)O)O)CO" G3I InChI InChI 1.03 "InChI=1S/C24H43NO18/c26-3-7-1-25-2-8(30)19(7)41-23-17(36)14(33)21(10(5-28)39-23)43-24-18(37)15(34)20(11(6-29)40-24)42-22-16(35)13(32)12(31)9(4-27)38-22/h7-37H,1-6H2/t7-,8-,9-,10-,11-,12-,13+,14-,15-,16-,17-,18-,19-,20-,21-,22+,23+,24+/m1/s1" G3I InChIKey InChI 1.03 WWLNURYAWFMUKB-QPKZCLDCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G3I "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranosyl-(1->4)-beta-D-glucopyranoside" G3I "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-[(2R,3S,4R,5R,6R)-4,5-dihydroxy-6-[(3R,4R,5R)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl]oxy-2-(hydroxymethyl)oxan-3-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G3I "Create component" 2008-04-17 RCSB G3I "Modify descriptor" 2011-06-04 RCSB G3I "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 G3I "Cellotetraose-like isofagomine" ? ? 2 G3I "Cellotriosyl isofagomine" ? ? #