data_G3L # _chem_comp.id G3L _chem_comp.name Nomilin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1R,2R,4S,7S,8S,11R,12R,13S,18R)-7-(furan-3-yl)-1,8,12,17,17-pentamethyl-5,15,20-trioxo-3,6,16-trioxapentacyclo[9.9.0.02,4.02,8.012,18]icosan-13-yl] acetate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-21 _chem_comp.pdbx_modified_date 2021-07-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.564 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G3L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CHG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G3L O1 O1 O 0 1 N N N -30.839 15.491 -22.983 -2.551 2.325 1.253 O01 G3L 1 G3L O2 O2 O 0 1 N N N -33.252 14.457 -21.719 -4.450 0.943 -0.498 O02 G3L 2 G3L O3 O3 O 0 1 N N N -31.903 13.644 -26.154 -0.277 2.878 -1.403 O03 G3L 3 G3L O4 O4 O 0 1 N N N -28.121 9.694 -27.887 4.768 0.581 0.403 O04 G3L 4 G3L O5 O5 O 0 1 N N N -28.670 9.684 -24.579 2.464 -1.693 -0.708 O05 G3L 5 G3L O6 O6 O 0 1 N N N -34.234 15.921 -23.148 -4.514 2.886 -1.540 O06 G3L 6 G3L O7 O7 O 0 1 Y N N -32.107 11.566 -18.291 -5.055 -3.168 -0.771 O07 G3L 7 G3L O8 O8 O 0 1 N N N -27.260 7.803 -27.068 5.820 -1.355 0.377 O08 G3L 8 G3L O9 O9 O 0 1 N N N -27.244 8.247 -23.470 2.070 -3.727 0.062 O09 G3L 9 G3L C1 C1 C 0 1 N N R -31.002 14.151 -23.519 -1.770 1.432 0.429 C01 G3L 10 G3L C2 C2 C 0 1 N N R -29.988 13.823 -24.674 -0.261 1.617 0.621 C02 G3L 11 G3L C3 C3 C 0 1 N N S -31.255 13.118 -22.419 -2.310 0.015 0.294 C03 G3L 12 G3L C4 C4 C 0 1 N N R -29.213 12.491 -24.351 0.400 0.251 0.678 C04 G3L 13 G3L C5 C5 C 0 1 N N S -32.054 15.233 -23.682 -2.616 2.554 -0.163 C05 G3L 14 G3L C6 C6 C 0 1 N N R -28.182 11.942 -25.460 1.914 0.208 0.634 C06 G3L 15 G3L C7 C7 C 0 1 N N N -29.881 12.609 -21.890 -1.696 -0.973 1.263 C07 G3L 16 G3L C8 C8 C 0 1 N N N -28.721 12.540 -22.901 -0.284 -0.599 1.730 C08 G3L 17 G3L C9 C9 C 0 1 N N R -29.036 11.759 -26.794 2.488 1.123 -0.413 C09 G3L 18 G3L C10 C10 C 0 1 N N N -30.690 13.520 -25.995 0.365 2.391 -0.511 C10 G3L 19 G3L C11 C11 C 0 1 N N S -32.034 13.821 -21.235 -3.835 0.046 0.440 C11 G3L 20 G3L C12 C12 C 0 1 N N N -29.088 15.064 -24.901 -0.109 2.438 1.912 C12 G3L 21 G3L C13 C13 C 0 1 N N N -29.811 13.053 -27.142 1.883 2.517 -0.457 C13 G3L 22 G3L C14 C14 C 0 1 N N S -27.612 10.559 -24.977 2.410 -1.199 0.661 C14 G3L 23 G3L C15 C15 C 0 1 N N N -32.142 11.976 -22.981 -2.082 -0.476 -1.140 C15 G3L 24 G3L C16 C16 C 0 1 N N N -33.261 15.248 -22.831 -3.940 2.140 -0.779 C16 G3L 25 G3L C17 C17 C 0 1 N N N -28.343 11.130 -28.059 3.990 1.118 -0.655 C17 G3L 26 G3L C18 C18 C 0 1 N N N -26.984 12.908 -25.608 2.379 0.777 1.955 C18 G3L 27 G3L C19 C19 C 0 1 Y N N -32.358 12.926 -20.050 -4.358 -1.348 0.206 C19 G3L 28 G3L C20 C20 C 0 1 N N N -26.685 9.804 -25.925 3.749 -1.450 1.344 C20 G3L 29 G3L C21 C21 C 0 1 N N N -27.073 11.815 -28.571 4.486 2.556 -0.891 C21 G3L 30 G3L C22 C22 C 0 1 N N N -29.320 11.116 -29.266 4.273 0.331 -1.946 C22 G3L 31 G3L C23 C23 C 0 1 N N N -27.378 9.026 -26.997 4.835 -0.720 0.661 C23 G3L 32 G3L C24 C24 C 0 1 Y N N -33.640 12.610 -19.560 -4.694 -2.299 1.196 C24 G3L 33 G3L C25 C25 C 0 1 Y N N -31.457 12.274 -19.252 -4.596 -1.925 -0.986 C25 G3L 34 G3L C26 C26 C 0 1 N N N -28.279 8.478 -24.077 2.275 -3.010 -0.888 C26 G3L 35 G3L C27 C27 C 0 1 Y N N -33.435 11.777 -18.486 -5.116 -3.401 0.550 C27 G3L 36 G3L C28 C28 C 0 1 N N N -29.321 7.445 -24.380 2.317 -3.593 -2.277 C28 G3L 37 G3L H1 H1 H 0 1 N N N -30.004 11.727 -24.339 0.155 -0.251 -0.297 H1 G3L 38 G3L H2 H2 H 0 1 N N N -32.159 15.651 -24.694 -2.134 3.429 -0.591 H2 G3L 39 G3L H3 H3 H 0 1 N N N -30.034 11.595 -21.492 -2.333 -1.056 2.153 H3 G3L 40 G3L H4 H4 H 0 1 N N N -29.571 13.280 -21.075 -1.653 -1.962 0.792 H4 G3L 41 G3L H5 H5 H 0 1 N N N -28.129 11.636 -22.698 0.268 -1.515 1.924 H5 G3L 42 G3L H6 H6 H 0 1 N N N -28.087 13.430 -22.773 -0.357 -0.055 2.673 H6 G3L 43 G3L H7 H7 H 0 1 N N N -29.815 11.033 -26.519 2.098 0.670 -1.357 H7 G3L 44 G3L H8 H8 H 0 1 N N N -31.371 14.615 -20.862 -4.070 0.349 1.459 H8 G3L 45 G3L H9 H9 H 0 1 N N N -28.564 15.313 -23.967 0.925 2.769 2.012 H9 G3L 46 G3L H10 H10 H 0 1 N N N -28.351 14.843 -25.687 -0.766 3.306 1.870 H10 G3L 47 G3L H11 H11 H 0 1 N N N -29.710 15.916 -25.211 -0.376 1.820 2.769 H11 G3L 48 G3L H12 H12 H 0 1 N N N -29.087 13.847 -27.380 2.176 3.107 0.403 H12 G3L 49 G3L H13 H13 H 0 1 N N N -30.446 12.861 -28.020 2.167 3.038 -1.383 H13 G3L 50 G3L H14 H14 H 0 1 N N N -27.017 10.781 -24.079 1.654 -1.808 1.175 H14 G3L 51 G3L H15 H15 H 0 1 N N N -32.326 11.232 -22.192 -1.035 -0.334 -1.411 H15 G3L 52 G3L H16 H16 H 0 1 N N N -33.101 12.392 -23.323 -2.333 -1.535 -1.206 H16 G3L 53 G3L H17 H17 H 0 1 N N N -31.628 11.495 -23.826 -2.714 0.090 -1.824 H17 G3L 54 G3L H18 H18 H 0 1 N N N -26.449 12.979 -24.649 3.444 0.581 2.081 H18 G3L 55 G3L H19 H19 H 0 1 N N N -26.300 12.528 -26.382 2.203 1.853 1.969 H19 G3L 56 G3L H20 H20 H 0 1 N N N -27.350 13.904 -25.899 1.824 0.308 2.768 H20 G3L 57 G3L H21 H21 H 0 1 N N N -26.084 9.102 -25.328 3.749 -1.225 2.404 H21 G3L 58 G3L H22 H22 H 0 1 N N N -26.021 10.536 -26.409 3.982 -2.532 1.261 H22 G3L 59 G3L H23 H23 H 0 1 N N N -26.329 11.861 -27.762 5.542 2.535 -1.162 H23 G3L 60 G3L H24 H24 H 0 1 N N N -26.662 11.241 -29.415 3.913 3.010 -1.700 H24 G3L 61 G3L H25 H25 H 0 1 N N N -27.316 12.835 -28.904 4.356 3.140 0.019 H25 G3L 62 G3L H26 H26 H 0 1 N N N -30.263 10.634 -28.969 4.013 -0.717 -1.797 H26 G3L 63 G3L H27 H27 H 0 1 N N N -29.521 12.149 -29.587 3.677 0.742 -2.760 H27 G3L 64 G3L H28 H28 H 0 1 N N N -28.868 10.555 -30.097 5.332 0.411 -2.195 H28 G3L 65 G3L H29 H29 H 0 1 N N N -34.588 12.952 -19.948 -4.624 -2.168 2.266 H29 G3L 66 G3L H30 H30 H 0 1 N N N -30.384 12.316 -19.369 -4.443 -1.466 -1.952 H30 G3L 67 G3L H31 H31 H 0 1 N N N -34.221 11.349 -17.881 -5.449 -4.318 1.015 H31 G3L 68 G3L H32 H32 H 0 1 N N N -29.003 6.473 -23.974 3.295 -3.405 -2.721 H32 G3L 69 G3L H33 H33 H 0 1 N N N -30.275 7.740 -23.919 2.143 -4.668 -2.225 H33 G3L 70 G3L H34 H34 H 0 1 N N N -29.450 7.363 -25.469 1.544 -3.130 -2.890 H34 G3L 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G3L C22 C17 SING N N 1 G3L C21 C17 SING N N 2 G3L C17 O4 SING N N 3 G3L C17 C9 SING N N 4 G3L O4 C23 SING N N 5 G3L C13 C9 SING N N 6 G3L C13 C10 SING N N 7 G3L O8 C23 DOUB N N 8 G3L C23 C20 SING N N 9 G3L C9 C6 SING N N 10 G3L O3 C10 DOUB N N 11 G3L C10 C2 SING N N 12 G3L C20 C14 SING N N 13 G3L C18 C6 SING N N 14 G3L C6 C14 SING N N 15 G3L C6 C4 SING N N 16 G3L C14 O5 SING N N 17 G3L C12 C2 SING N N 18 G3L C2 C4 SING N N 19 G3L C2 C1 SING N N 20 G3L O5 C26 SING N N 21 G3L C28 C26 SING N N 22 G3L C4 C8 SING N N 23 G3L C26 O9 DOUB N N 24 G3L C5 C1 SING N N 25 G3L C5 O1 SING N N 26 G3L C5 C16 SING N N 27 G3L C1 O1 SING N N 28 G3L C1 C3 SING N N 29 G3L O6 C16 DOUB N N 30 G3L C15 C3 SING N N 31 G3L C8 C7 SING N N 32 G3L C16 O2 SING N N 33 G3L C3 C7 SING N N 34 G3L C3 C11 SING N N 35 G3L O2 C11 SING N N 36 G3L C11 C19 SING N N 37 G3L C19 C24 SING Y N 38 G3L C19 C25 DOUB Y N 39 G3L C24 C27 DOUB Y N 40 G3L C25 O7 SING Y N 41 G3L C27 O7 SING Y N 42 G3L C4 H1 SING N N 43 G3L C5 H2 SING N N 44 G3L C7 H3 SING N N 45 G3L C7 H4 SING N N 46 G3L C8 H5 SING N N 47 G3L C8 H6 SING N N 48 G3L C9 H7 SING N N 49 G3L C11 H8 SING N N 50 G3L C12 H9 SING N N 51 G3L C12 H10 SING N N 52 G3L C12 H11 SING N N 53 G3L C13 H12 SING N N 54 G3L C13 H13 SING N N 55 G3L C14 H14 SING N N 56 G3L C15 H15 SING N N 57 G3L C15 H16 SING N N 58 G3L C15 H17 SING N N 59 G3L C18 H18 SING N N 60 G3L C18 H19 SING N N 61 G3L C18 H20 SING N N 62 G3L C20 H21 SING N N 63 G3L C20 H22 SING N N 64 G3L C21 H23 SING N N 65 G3L C21 H24 SING N N 66 G3L C21 H25 SING N N 67 G3L C22 H26 SING N N 68 G3L C22 H27 SING N N 69 G3L C22 H28 SING N N 70 G3L C24 H29 SING N N 71 G3L C25 H30 SING N N 72 G3L C27 H31 SING N N 73 G3L C28 H32 SING N N 74 G3L C28 H33 SING N N 75 G3L C28 H34 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G3L InChI InChI 1.03 "InChI=1S/C28H34O9/c1-14(29)34-19-12-20(31)36-24(2,3)17-11-18(30)27(6)16(26(17,19)5)7-9-25(4)21(15-8-10-33-13-15)35-23(32)22-28(25,27)37-22/h8,10,13,16-17,19,21-22H,7,9,11-12H2,1-6H3/t16-,17+,19+,21+,22-,25+,26-,27+,28-/m1/s1" G3L InChIKey InChI 1.03 KPDOJFFZKAUIOE-WNGDLQANSA-N G3L SMILES_CANONICAL CACTVS 3.385 "CC(=O)O[C@H]1CC(=O)OC(C)(C)[C@@H]2CC(=O)[C@]3(C)[C@H](CC[C@@]4(C)[C@@H](OC(=O)[C@H]5O[C@@]345)c6cocc6)[C@@]12C" G3L SMILES CACTVS 3.385 "CC(=O)O[CH]1CC(=O)OC(C)(C)[CH]2CC(=O)[C]3(C)[CH](CC[C]4(C)[CH](OC(=O)[CH]5O[C]345)c6cocc6)[C]12C" G3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)O[C@H]1CC(=O)OC([C@H]2[C@]1([C@H]3CC[C@]4([C@@H](OC(=O)[C@@H]5[C@@]4([C@@]3(C(=O)C2)C)O5)c6ccoc6)C)C)(C)C" G3L SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)OC1CC(=O)OC(C2C1(C3CCC4(C(OC(=O)C5C4(C3(C(=O)C2)C)O5)c6ccoc6)C)C)(C)C" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id G3L _pdbx_chem_comp_synonyms.name "[(1R,2R,4S,7S,8S,11R,12R,13S,18R)-7-(furan-3-yl)-1,8,12,17,17-pentamethyl-5,15,20-trioxo-3,6,16-trioxapentacyclo[9.9.0.02,4.02,8.012,18]icosan-13-yl] acetate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G3L "Create component" 2020-07-21 PDBJ G3L "Modify synonyms" 2021-03-13 RCSB G3L "Initial release" 2021-07-07 RCSB ##