data_G3P # _chem_comp.id G3P _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C3 H9 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.074 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G3P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2TSY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G3P O1 O1 O 0 1 N Y N N N N 23.851 41.167 10.051 4.379 0.302 -0.314 O1 G3P 1 G3P C1 C1 C 0 1 N N N N N N 24.040 42.479 9.583 3.156 0.705 0.305 C1 G3P 2 G3P C2 C2 C 0 1 N N R N N N 23.888 43.437 10.733 1.997 -0.105 -0.279 C2 G3P 3 G3P O2 O2 O 0 1 N Y N N N N 25.185 43.823 11.072 2.159 -1.483 0.064 O2 G3P 4 G3P C3 C3 C 0 1 N N N N N N 23.164 44.727 10.244 0.675 0.410 0.291 C3 G3P 5 G3P O1P O1P O 0 1 N N N N N N 23.315 45.812 11.199 -0.413 -0.267 -0.341 O1P G3P 6 G3P O4P O4P O 0 1 N N N N N N 22.855 48.218 12.132 -2.898 -1.003 -0.786 O4P G3P 7 G3P O2P O2P O 0 1 N N N N N N 22.816 47.876 9.719 -2.166 -0.144 1.472 O2P G3P 8 G3P O3P O3P O 0 1 N N N N N N 20.943 46.985 11.184 -2.326 1.535 -0.406 O3P G3P 9 G3P P P P 0 1 N N N N N N 22.447 47.228 11.041 -1.955 0.027 0.016 P G3P 10 G3P HO1 HO1 H 0 1 N N N N N N 23.946 40.556 9.330 5.158 0.776 0.009 HO1 G3P 11 G3P H11 H11 H 0 1 N N N N N N 25.048 42.576 9.154 3.217 0.529 1.379 H11 G3P 12 G3P H12 H12 H 0 1 N N N N N N 23.290 42.707 8.812 2.987 1.766 0.120 H12 G3P 13 G3P H2 H2 H 0 1 N N N N N N 23.340 42.978 11.569 1.991 0.000 -1.364 H2 G3P 14 G3P HO2 HO2 H 0 1 N N N N N N 25.154 44.434 11.799 2.174 -1.652 1.016 HO2 G3P 15 G3P H31 H31 H 0 1 N N N N N N 23.594 45.036 9.280 0.645 0.224 1.365 H31 G3P 16 G3P H32 H32 H 0 1 N N N N N N 22.093 44.510 10.115 0.593 1.482 0.106 H32 G3P 17 G3P HOP3 HOP3 H 0 0 N N N N N N 20.497 47.290 10.403 -2.212 1.719 -1.349 HOP3 G3P 18 G3P HOP4 HOP4 H 0 0 N N N N N N 23.236 48.991 11.732 -3.842 -0.884 -0.619 HOP4 G3P 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G3P O1 C1 SING N N 1 G3P C1 C2 SING N N 2 G3P C2 O2 SING N N 3 G3P C2 C3 SING N N 4 G3P C3 O1P SING N N 5 G3P O1P P SING N N 6 G3P O4P P SING N N 7 G3P O2P P DOUB N N 8 G3P O3P P SING N N 9 G3P O1 HO1 SING N N 10 G3P C1 H11 SING N N 11 G3P C1 H12 SING N N 12 G3P C2 H2 SING N N 13 G3P O2 HO2 SING N N 14 G3P C3 H31 SING N N 15 G3P C3 H32 SING N N 16 G3P O3P HOP3 SING N N 17 G3P O4P HOP4 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G3P SMILES ACDLabs 12.01 "O=P(OCC(O)CO)(O)O" G3P InChI InChI 1.03 "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1" G3P InChIKey InChI 1.03 AWUCVROLDVIAJX-GSVOUGTGSA-N G3P SMILES_CANONICAL CACTVS 3.385 "OC[C@@H](O)CO[P](O)(O)=O" G3P SMILES CACTVS 3.385 "OC[CH](O)CO[P](O)(O)=O" G3P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@H](COP(=O)(O)O)O)O" G3P SMILES "OpenEye OEToolkits" 1.7.6 "C(C(COP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G3P "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2,3-dihydroxypropyl dihydrogen phosphate" G3P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2,3-bis(oxidanyl)propyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G3P "Create component" 1999-07-08 RCSB G3P "Modify leaving atom flag" 2011-01-19 RCSB G3P "Modify descriptor" 2011-06-04 RCSB G3P "Modify leaving atom flag" 2016-02-24 RCSB G3P "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 G3P CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C1 SG ? ? 2 G3P GLU None "Covalent chemical modification" "Amino-acid side chain" "Any position" C1 OE2 ? ? 3 G3P LYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 NZ ? ? 4 G3P SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" O4P CB ? ? #