data_G3Y # _chem_comp.id G3Y _chem_comp.name "(1~{R},2~{S},3~{S},4~{R},5~{S})-2-azanyl-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-16 _chem_comp.pdbx_modified_date 2024-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 253.317 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G3Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8S45 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G3Y C4 C1 C 0 1 Y N N N N N -17.727 -26.139 -33.750 3.468 0.914 0.679 C4 G3Y 1 G3Y C5 C2 C 0 1 Y N N N N N -18.484 -27.236 -34.127 4.644 0.282 0.328 C5 G3Y 2 G3Y C6 C3 C 0 1 N N R N N N -15.951 -23.783 -33.580 -0.494 0.343 -0.329 C6 G3Y 3 G3Y C7 C4 C 0 1 N N S N N N -14.677 -24.582 -33.282 -1.867 0.998 -0.142 C7 G3Y 4 G3Y C8 C5 C 0 1 N N S N N N -13.644 -23.831 -32.444 -2.946 0.095 -0.748 C8 G3Y 5 G3Y C9 C6 C 0 1 N N R N N N -13.611 -22.339 -32.784 -2.779 -1.321 -0.172 C9 G3Y 6 G3Y C10 C7 C 0 1 N N N N N N -14.619 -21.595 -31.964 -2.559 -1.186 1.353 C10 G3Y 7 G3Y C11 C8 C 0 1 N N S N N N -15.538 -22.295 -33.928 -0.559 -1.101 0.194 C11 G3Y 8 G3Y O2 O1 O 0 1 N N N N N N -14.077 -24.918 -34.529 -1.882 2.267 -0.799 O2 G3Y 9 G3Y N N1 N 0 1 N N N N N N -13.961 -24.017 -30.989 -4.276 0.614 -0.401 N G3Y 10 G3Y O1 O2 O 0 1 N N N N N N -14.139 -22.129 -34.121 -1.499 -1.821 -0.633 O1 G3Y 11 G3Y O O3 O 0 1 N N N N N N -15.834 -21.695 -32.704 -1.133 -1.076 1.514 O G3Y 12 G3Y S S1 S 0 1 N N N N N N -17.194 -23.919 -32.233 0.755 1.271 0.603 S G3Y 13 G3Y C3 C9 C 0 1 Y N N N N N -18.084 -25.397 -32.632 2.260 0.472 0.153 C3 G3Y 14 G3Y C2 C10 C 0 1 Y N N N N N -19.191 -25.782 -31.886 2.242 -0.601 -0.730 C2 G3Y 15 G3Y C1 C11 C 0 1 Y N N N N N -19.945 -26.877 -32.270 3.423 -1.224 -1.081 C1 G3Y 16 G3Y C C12 C 0 1 Y N N N N N -19.596 -27.601 -33.393 4.622 -0.789 -0.547 C G3Y 17 G3Y H1 H1 H 0 1 N N N N N N -16.857 -25.860 -34.327 3.486 1.747 1.366 H1 G3Y 18 G3Y H2 H2 H 0 1 N N N N N N -18.204 -27.809 -34.999 5.583 0.625 0.737 H2 G3Y 19 G3Y H3 H3 H 0 1 N N N N N N -16.435 -24.216 -34.468 -0.232 0.339 -1.387 H3 G3Y 20 G3Y H4 H4 H 0 1 N N N N N N -14.961 -25.499 -32.745 -2.062 1.136 0.922 H4 G3Y 21 G3Y H5 H5 H 0 1 N N N N N N -12.651 -24.257 -32.649 -2.835 0.068 -1.832 H5 G3Y 22 G3Y H6 H6 H 0 1 N N N N N N -12.600 -21.924 -32.662 -3.614 -1.975 -0.420 H6 G3Y 23 G3Y H7 H7 H 0 1 N N N N N N -14.730 -22.058 -30.972 -3.052 -0.289 1.730 H7 G3Y 24 G3Y H8 H8 H 0 1 N N N N N N -14.322 -20.542 -31.846 -2.933 -2.069 1.870 H8 G3Y 25 G3Y H9 H9 H 0 1 N N N N N N -16.139 -21.910 -34.765 0.427 -1.566 0.197 H9 G3Y 26 G3Y H10 H10 H 0 1 N N N N N N -13.282 -25.415 -34.375 -1.221 2.890 -0.467 H10 G3Y 27 G3Y H11 H11 H 0 1 N N N N N N -13.288 -23.527 -30.435 -4.402 1.550 -0.756 H11 G3Y 28 G3Y H12 H12 H 0 1 N N N N N N -14.874 -23.657 -30.798 -5.003 -0.001 -0.735 H12 G3Y 29 G3Y H14 H14 H 0 1 N N N N N N -19.464 -25.224 -31.002 1.305 -0.947 -1.141 H14 G3Y 30 G3Y H15 H15 H 0 1 N N N N N N -20.809 -27.166 -31.690 3.409 -2.058 -1.767 H15 G3Y 31 G3Y H16 H16 H 0 1 N N N N N N -20.191 -28.450 -33.697 5.544 -1.281 -0.820 H16 G3Y 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G3Y O2 C7 SING N N 1 G3Y C5 C4 DOUB Y N 2 G3Y C5 C SING Y N 3 G3Y O1 C11 SING N N 4 G3Y O1 C9 SING N N 5 G3Y C11 C6 SING N N 6 G3Y C11 O SING N N 7 G3Y C4 C3 SING Y N 8 G3Y C6 C7 SING N N 9 G3Y C6 S SING N N 10 G3Y C C1 DOUB Y N 11 G3Y C7 C8 SING N N 12 G3Y C9 C8 SING N N 13 G3Y C9 C10 SING N N 14 G3Y O C10 SING N N 15 G3Y C3 S SING N N 16 G3Y C3 C2 DOUB Y N 17 G3Y C8 N SING N N 18 G3Y C1 C2 SING Y N 19 G3Y C4 H1 SING N N 20 G3Y C5 H2 SING N N 21 G3Y C6 H3 SING N N 22 G3Y C7 H4 SING N N 23 G3Y C8 H5 SING N N 24 G3Y C9 H6 SING N N 25 G3Y C10 H7 SING N N 26 G3Y C10 H8 SING N N 27 G3Y C11 H9 SING N N 28 G3Y O2 H10 SING N N 29 G3Y N H11 SING N N 30 G3Y N H12 SING N N 31 G3Y C2 H14 SING N N 32 G3Y C1 H15 SING N N 33 G3Y C H16 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G3Y InChI InChI 1.06 "InChI=1S/C12H15NO3S/c13-9-8-6-15-12(16-8)11(10(9)14)17-7-4-2-1-3-5-7/h1-5,8-12,14H,6,13H2/t8-,9+,10-,11+,12-/m0/s1" G3Y InChIKey InChI 1.06 OFCUYBHPAYPQJR-MJDLHHQISA-N G3Y SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1[C@@H]2CO[C@@H](O2)[C@H](Sc3ccccc3)[C@H]1O" G3Y SMILES CACTVS 3.385 "N[CH]1[CH]2CO[CH](O2)[CH](Sc3ccccc3)[CH]1O" G3Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S[C@@H]2[C@H]([C@@H]([C@@H]3CO[C@H]2O3)N)O" G3Y SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)SC2C(C(C3COC2O3)N)O" # _pdbx_chem_comp_identifier.comp_id G3Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},3~{S},4~{R},5~{S})-2-azanyl-4-phenylsulfanyl-6,8-dioxabicyclo[3.2.1]octan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G3Y "Create component" 2021-12-16 RCSB G3Y "Initial release" 2024-06-19 RCSB #