data_G47 # _chem_comp.id G47 _chem_comp.name "N2-ETHANETHIOL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H18 N5 O7 P S" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-10-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 407.339 _chem_comp.one_letter_code G _chem_comp.three_letter_code G47 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CW9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G47 P P P 0 1 N N N 0.171 -0.362 22.011 1.592 -1.245 -4.964 P G47 1 G47 O1P O1P O 0 1 N N N -0.884 -1.052 21.216 0.339 -0.227 -4.868 O1P G47 2 G47 O2P O2P O 0 1 N N N 1.473 -1.003 22.234 2.575 -0.951 -6.059 O2P G47 3 G47 O3P O3P O 0 1 N Y N -0.470 0.073 23.409 0.886 -2.697 -5.051 O3P G47 4 G47 "O5'" O5* O 0 1 N N N 0.474 1.070 21.385 2.211 -1.232 -3.468 "O5'" G47 5 G47 "C5'" C5* C 0 1 N N N -0.587 1.974 21.096 1.348 -1.500 -2.377 "C5'" G47 6 G47 "C4'" C4* C 0 1 N N R -0.178 3.398 21.393 2.156 -1.432 -1.088 "C4'" G47 7 G47 "O4'" O4* O 0 1 N N N -0.138 3.650 22.821 2.678 -0.093 -0.958 "O4'" G47 8 G47 "C3'" C3* C 0 1 N N S 1.192 3.802 20.858 1.309 -1.697 0.152 "C3'" G47 9 G47 "O3'" O3* O 0 1 N N N 1.082 5.142 20.347 2.127 -2.250 1.180 "O3'" G47 10 G47 "C2'" C2* C 0 1 N N N 2.077 3.751 22.101 0.878 -0.312 0.578 "C2'" G47 11 G47 "C1'" C1* C 0 1 N N R 1.125 4.222 23.189 2.101 0.516 0.211 "C1'" G47 12 G47 N9 N9 N 0 1 Y N N 1.435 3.707 24.518 1.818 1.923 -0.049 N9 G47 13 G47 C8 C8 C 0 1 Y N N 1.580 2.384 24.852 1.431 2.463 -1.253 C8 G47 14 G47 N7 N7 N 0 1 Y N N 1.797 2.203 26.135 1.247 3.767 -1.185 N7 G47 15 G47 C5 C5 C 0 1 Y N N 1.797 3.483 26.670 1.528 4.070 0.114 C5 G47 16 G47 C6 C6 C 0 1 N N N 1.988 3.922 28.016 1.494 5.351 0.765 C6 G47 17 G47 O6 O6 O 0 1 N N N 2.163 3.243 29.043 1.191 6.394 0.200 O6 G47 18 G47 N1 N1 N 0 1 N N N 1.959 5.300 28.109 1.853 5.233 2.115 N1 G47 19 G47 C2 C2 C 0 1 N N N 1.759 6.144 27.045 2.203 4.026 2.765 C2 G47 20 G47 N2 N2 N 0 1 N N N 1.788 7.427 27.324 2.519 4.145 4.093 N2 G47 21 G47 N3 N3 N 0 1 N N N 1.556 5.753 25.800 2.225 2.866 2.144 N3 G47 22 G47 C4 C4 C 0 1 Y N N 1.594 4.422 25.683 1.882 2.959 0.840 C4 G47 23 G47 C6A C6A C 0 1 N N N 1.493 8.475 26.365 2.890 2.990 4.858 C6A G47 24 G47 C7A C7A C 0 1 N N N 2.740 8.813 25.646 3.209 3.316 6.311 C7A G47 25 G47 SG SG S 0 1 N N N 3.457 10.363 26.172 4.617 4.457 6.466 SG G47 26 G47 H1P H1P H 0 1 N N N -1.726 -0.637 21.071 -0.163 -0.014 -5.684 H1P G47 27 G47 H3P H3P H 0 1 N N N 0.202 0.512 23.915 0.508 -2.990 -5.907 H3P G47 28 G47 "H5'1" 1H5* H 0 0 N N N -1.524 1.694 21.632 0.551 -0.756 -2.359 "H5'1" G47 29 G47 "H5'2" 2H5* H 0 0 N N N -0.951 1.860 20.048 0.917 -2.495 -2.497 "H5'2" G47 30 G47 "H4'" H4* H 0 1 N N N -0.939 4.077 20.943 3.008 -2.117 -1.157 "H4'" G47 31 G47 "H3'" H3* H 0 1 N N N 1.549 3.094 20.074 0.475 -2.383 -0.018 "H3'" G47 32 G47 HA HA H 0 1 N N N 1.935 5.394 20.014 2.928 -1.706 1.218 HA G47 33 G47 "H2'1" 1H2* H 0 0 N N N 3.029 4.326 22.026 0.008 0.008 -0.009 "H2'1" G47 34 G47 "H2'2" 2H2* H 0 0 N N N 2.563 2.766 22.294 0.635 -0.225 1.641 "H2'2" G47 35 G47 "H1'" H1* H 0 1 N N N 1.064 5.335 23.203 2.853 0.503 1.007 "H1'" G47 36 G47 H8 H8 H 0 1 N N N 1.521 1.560 24.121 1.302 1.855 -2.139 H8 G47 37 G47 H1 H1 H 0 1 N N N 2.095 5.718 29.029 1.862 6.083 2.672 H1 G47 38 G47 H2 H2 H 0 1 N N N 2.033 7.704 28.274 2.476 5.055 4.478 H2 G47 39 G47 H6A1 1H6A H 0 0 N N N 1.015 9.365 26.836 2.038 2.303 4.819 H6A1 G47 40 G47 H6A2 2H6A H 0 0 N N N 0.660 8.203 25.675 3.732 2.506 4.352 H6A2 G47 41 G47 H7A1 1H7A H 0 0 N N N 2.577 8.805 24.543 2.344 3.763 6.810 H7A1 G47 42 G47 H7A2 2H7A H 0 0 N N N 3.482 7.985 25.727 3.469 2.395 6.843 H7A2 G47 43 G47 HS1 HS1 H 0 1 N N N 3.631 10.346 27.460 4.337 4.854 7.714 HS1 G47 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G47 P O1P SING N N 1 G47 P O2P DOUB N N 2 G47 P O3P SING N N 3 G47 P "O5'" SING N N 4 G47 O1P H1P SING N N 5 G47 O3P H3P SING N N 6 G47 "O5'" "C5'" SING N N 7 G47 "C5'" "C4'" SING N N 8 G47 "C5'" "H5'1" SING N N 9 G47 "C5'" "H5'2" SING N N 10 G47 "C4'" "O4'" SING N N 11 G47 "C4'" "C3'" SING N N 12 G47 "C4'" "H4'" SING N N 13 G47 "O4'" "C1'" SING N N 14 G47 "C3'" "O3'" SING N N 15 G47 "C3'" "C2'" SING N N 16 G47 "C3'" "H3'" SING N N 17 G47 "O3'" HA SING N N 18 G47 "C2'" "C1'" SING N N 19 G47 "C2'" "H2'1" SING N N 20 G47 "C2'" "H2'2" SING N N 21 G47 "C1'" N9 SING N N 22 G47 "C1'" "H1'" SING N N 23 G47 N9 C8 SING Y N 24 G47 N9 C4 SING Y N 25 G47 C8 N7 DOUB Y N 26 G47 C8 H8 SING N N 27 G47 N7 C5 SING Y N 28 G47 C5 C6 SING N N 29 G47 C5 C4 DOUB Y N 30 G47 C6 O6 DOUB N N 31 G47 C6 N1 SING N N 32 G47 N1 C2 SING N N 33 G47 N1 H1 SING N N 34 G47 C2 N2 SING N N 35 G47 C2 N3 DOUB N N 36 G47 N2 C6A SING N N 37 G47 N2 H2 SING N N 38 G47 N3 C4 SING N N 39 G47 C6A C7A SING N N 40 G47 C6A H6A1 SING N N 41 G47 C6A H6A2 SING N N 42 G47 C7A SG SING N N 43 G47 C7A H7A1 SING N N 44 G47 C7A H7A2 SING N N 45 G47 HS1 SG SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G47 SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=C(NCCS)N1)C3OC(C(O)C3)COP(=O)(O)O" G47 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCS" G47 SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCS" G47 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)NCCS" G47 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)NCCS" G47 InChI InChI 1.03 "InChI=1S/C12H18N5O7PS/c18-6-3-8(24-7(6)4-23-25(20,21)22)17-5-14-9-10(17)15-12(13-1-2-26)16-11(9)19/h5-8,18,26H,1-4H2,(H2,20,21,22)(H2,13,15,16,19)/t6-,7+,8+/m0/s1" G47 InChIKey InChI 1.03 BYDQPYVCNHFUFE-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G47 "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-N-(2-sulfanylethyl)guanosine 5'-(dihydrogen phosphate) ; G47 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[6-oxo-2-(2-sulfanylethylamino)-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G47 "Create component" 1999-10-14 RCSB G47 "Modify descriptor" 2011-06-04 RCSB #