data_G48 # _chem_comp.id G48 _chem_comp.name "2'-O-METHYOXYETHYL-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H20 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-05-12 _chem_comp.pdbx_modified_date 2013-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.300 _chem_comp.one_letter_code G _chem_comp.three_letter_code G48 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 468D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G48 P P P 0 1 N N N 30.232 -3.179 3.255 5.718 -0.480 -0.016 P G48 1 G48 OP1 OP1 O 0 1 N N N 31.292 -3.542 2.316 6.517 0.749 0.186 OP1 G48 2 G48 OP3 OP3 O 0 1 N Y N 29.690 -4.217 4.153 5.592 -1.273 1.380 OP3 G48 3 G48 "O5'" "O5'" O 0 1 N N N 30.642 -1.928 4.139 4.249 -0.085 -0.544 "O5'" G48 4 G48 "C5'" "C5'" C 0 1 N N N 31.094 -0.742 3.523 3.393 0.826 0.148 "C5'" G48 5 G48 "C4'" "C4'" C 0 1 N N R 31.316 0.326 4.550 2.080 0.976 -0.623 "C4'" G48 6 G48 "O4'" "O4'" O 0 1 N N N 30.046 0.820 5.035 1.355 -0.265 -0.600 "O4'" G48 7 G48 "C3'" "C3'" C 0 1 N N R 32.036 -0.092 5.816 1.192 2.037 0.056 "C3'" G48 8 G48 "O3'" "O3'" O 0 1 N N N 33.428 -0.205 5.646 0.916 3.110 -0.847 "O3'" G48 9 G48 "C2'" "C2'" C 0 1 N N R 31.634 1.010 6.776 -0.109 1.275 0.407 "C2'" G48 10 G48 "O2'" "O2'" O 0 1 N N N 32.374 2.190 6.507 -1.259 2.082 0.146 "O2'" G48 11 G48 "C1'" "C1'" C 0 1 N N R 30.167 1.189 6.400 -0.049 0.067 -0.562 "C1'" G48 12 G48 N9 N9 N 0 1 Y N N 29.375 0.258 7.193 -0.831 -1.055 -0.037 N9 G48 13 G48 C8 C8 C 0 1 Y N N 28.935 -1.003 6.836 -0.369 -2.052 0.773 C8 G48 14 G48 N7 N7 N 0 1 Y N N 28.268 -1.593 7.788 -1.334 -2.881 1.046 N7 G48 15 G48 C5 C5 C 0 1 Y N N 28.266 -0.662 8.829 -2.468 -2.468 0.430 C5 G48 16 G48 C6 C6 C 0 1 N N N 27.702 -0.720 10.157 -3.792 -2.961 0.371 C6 G48 17 G48 O6 O6 O 0 1 N N N 27.039 -1.615 10.685 -4.107 -3.979 0.965 O6 G48 18 G48 N1 N1 N 0 1 N N N 27.991 0.428 10.885 -4.700 -2.277 -0.360 N1 G48 19 G48 C2 C2 C 0 1 N N N 28.722 1.497 10.418 -4.337 -1.141 -1.020 C2 G48 20 G48 N2 N2 N 0 1 N N N 28.966 2.486 11.284 -5.280 -0.467 -1.755 N2 G48 21 G48 N3 N3 N 0 1 N N N 29.201 1.582 9.196 -3.111 -0.672 -0.972 N3 G48 22 G48 C4 C4 C 0 1 Y N N 28.950 0.476 8.466 -2.160 -1.292 -0.264 C4 G48 23 G48 "CA'" "CA'" C 0 1 N N N 32.117 3.305 7.355 -1.693 2.855 1.267 "CA'" G48 24 G48 "CB'" "CB'" C 0 1 N N N 33.100 4.411 7.077 -2.923 3.676 0.875 "CB'" G48 25 G48 "OC'" "OC'" O 0 1 N N N 34.470 3.978 7.313 -4.009 2.795 0.580 "OC'" G48 26 G48 "CD'" "CD'" C 0 1 N N N 35.403 4.953 6.786 -5.214 3.464 0.201 "CD'" G48 27 G48 OP2 OP2 O 0 1 N N N 29.110 -2.525 2.315 6.444 -1.420 -1.103 OP2 G48 28 G48 HOP3 HOP3 H 0 0 N Y N 30.134 -5.041 3.989 5.079 -2.091 1.322 HOP3 G48 29 G48 "H5'" "H5'" H 0 1 N N N 32.040 -0.943 2.999 3.186 0.443 1.147 "H5'" G48 30 G48 "H5''" "H5''" H 0 0 N N N 30.340 -0.399 2.800 3.882 1.797 0.225 "H5''" G48 31 G48 "H4'" "H4'" H 0 1 N N N 31.876 1.151 4.086 2.286 1.266 -1.653 "H4'" G48 32 G48 "H3'" "H3'" H 0 1 N N N 31.613 -1.044 6.169 1.670 2.412 0.961 "H3'" G48 33 G48 "HO3'" "HO3'" H 0 0 N Y N 33.827 -0.468 6.467 1.703 3.585 -1.145 "HO3'" G48 34 G48 "H2'" "H2'" H 0 1 N N N 31.733 0.679 7.820 -0.097 0.942 1.444 "H2'" G48 35 G48 "H1'" "H1'" H 0 1 N N N 29.853 2.229 6.573 -0.403 0.352 -1.553 "H1'" G48 36 G48 H8 H8 H 0 1 N N N 29.124 -1.451 5.872 0.646 -2.139 1.133 H8 G48 37 G48 H1 H1 H 0 1 N N N 27.641 0.482 11.820 -5.614 -2.596 -0.415 H1 G48 38 G48 H21 H21 H 0 1 N N N 29.507 3.278 11.000 -6.190 -0.801 -1.799 H21 G48 39 G48 H22 H22 H 0 1 N N N 28.608 2.434 12.216 -5.037 0.343 -2.230 H22 G48 40 G48 HCA2 HCA2 H 0 0 N N N 31.096 3.672 7.172 -1.948 2.189 2.091 HCA2 G48 41 G48 HCA1 HCA1 H 0 0 N N N 32.211 2.991 8.405 -0.892 3.527 1.577 HCA1 G48 42 G48 HCB1 HCB1 H 0 0 N N N 32.876 5.263 7.736 -3.201 4.331 1.701 HCB1 G48 43 G48 HCB2 HCB2 H 0 0 N N N 32.999 4.723 6.027 -2.694 4.277 -0.005 HCB2 G48 44 G48 HCD1 HCD1 H 0 0 N N N 36.433 4.613 6.971 -5.539 4.115 1.012 HCD1 G48 45 G48 HCD2 HCD2 H 0 0 N N N 35.243 5.065 5.704 -5.032 4.061 -0.693 HCD2 G48 46 G48 HCD3 HCD3 H 0 0 N N N 35.241 5.921 7.283 -5.989 2.727 -0.007 HCD3 G48 47 G48 HOP2 HOP2 H 0 0 N N N 29.406 -2.537 1.412 7.336 -1.697 -0.850 HOP2 G48 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G48 OP1 P DOUB N N 1 G48 P "O5'" SING N N 2 G48 P OP3 SING N N 3 G48 "C5'" "O5'" SING N N 4 G48 "C5'" "C4'" SING N N 5 G48 "C4'" "O4'" SING N N 6 G48 "C4'" "C3'" SING N N 7 G48 "O4'" "C1'" SING N N 8 G48 "O3'" "C3'" SING N N 9 G48 "C3'" "C2'" SING N N 10 G48 "C1'" "C2'" SING N N 11 G48 "C1'" N9 SING N N 12 G48 "O2'" "C2'" SING N N 13 G48 "O2'" "CA'" SING N N 14 G48 "CD'" "OC'" SING N N 15 G48 C8 N9 SING Y N 16 G48 C8 N7 DOUB Y N 17 G48 "CB'" "OC'" SING N N 18 G48 "CB'" "CA'" SING N N 19 G48 N9 C4 SING Y N 20 G48 N7 C5 SING Y N 21 G48 C4 C5 DOUB Y N 22 G48 C4 N3 SING N N 23 G48 C5 C6 SING N N 24 G48 N3 C2 DOUB N N 25 G48 C6 O6 DOUB N N 26 G48 C6 N1 SING N N 27 G48 C2 N1 SING N N 28 G48 C2 N2 SING N N 29 G48 P OP2 SING N N 30 G48 OP3 HOP3 SING N N 31 G48 "C5'" "H5'" SING N N 32 G48 "C5'" "H5''" SING N N 33 G48 "C4'" "H4'" SING N N 34 G48 "C3'" "H3'" SING N N 35 G48 "O3'" "HO3'" SING N N 36 G48 "C2'" "H2'" SING N N 37 G48 "C1'" "H1'" SING N N 38 G48 C8 H8 SING N N 39 G48 N1 H1 SING N N 40 G48 N2 H21 SING N N 41 G48 N2 H22 SING N N 42 G48 "CA'" HCA2 SING N N 43 G48 "CA'" HCA1 SING N N 44 G48 "CB'" HCB1 SING N N 45 G48 "CB'" HCB2 SING N N 46 G48 "CD'" HCD1 SING N N 47 G48 "CD'" HCD2 SING N N 48 G48 "CD'" HCD3 SING N N 49 G48 OP2 HOP2 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G48 SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(OCCOC)C3O" G48 InChI InChI 1.03 "InChI=1S/C13H20N5O9P/c1-24-2-3-25-9-8(19)6(4-26-28(21,22)23)27-12(9)18-5-15-7-10(18)16-13(14)17-11(7)20/h5-6,8-9,12,19H,2-4H2,1H3,(H2,21,22,23)(H3,14,16,17,20)/t6-,8-,9-,12-/m1/s1" G48 InChIKey InChI 1.03 XPQHQKCWTLHVLZ-WOUKDFQISA-N G48 SMILES_CANONICAL CACTVS 3.370 "COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N" G48 SMILES CACTVS 3.370 "COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N" G48 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COCCO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)O)O" G48 SMILES "OpenEye OEToolkits" 1.7.6 "COCCOC1C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G48 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-O-(2-methoxyethyl)guanosine 5'-(dihydrogen phosphate) ; G48 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-(2-methoxyethoxy)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G48 "Create component" 1999-05-12 RCSB G48 "Modify descriptor" 2011-06-04 RCSB G48 "Modify component atom id" 2013-01-10 RCSB #