data_G4F # _chem_comp.id G4F _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{S},6~{R})-5-fluoranyl-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 F N5 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-06-06 _chem_comp.pdbx_modified_date 2018-07-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 607.332 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6GPJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G4F O13 O1 O 0 1 N N N 21.368 -27.294 -63.762 0.953 2.797 2.043 O13 G4F 1 G4F P P1 P 0 1 N N N 20.523 -27.668 -62.602 1.154 2.660 0.583 P G4F 2 G4F O4 O2 O 0 1 N N N 21.177 -28.189 -61.370 1.623 4.073 -0.029 O4 G4F 3 G4F O5 O3 O 0 1 N N N 19.579 -26.434 -62.256 2.285 1.550 0.299 O5 G4F 4 G4F P1 P2 P 0 1 N N N 18.210 -26.344 -61.425 3.688 1.178 0.996 P1 G4F 5 G4F O11 O4 O 0 1 N N N 18.064 -27.506 -60.513 3.414 0.296 2.315 O11 G4F 6 G4F O12 O5 O 0 1 N N N 17.130 -26.015 -62.382 4.396 2.422 1.373 O12 G4F 7 G4F O6 O6 O 0 1 N N N 18.587 -25.009 -60.480 4.593 0.336 -0.035 O6 G4F 8 G4F C8 C1 C 0 1 N N R 19.093 -23.798 -61.002 5.938 -0.054 0.250 C8 G4F 9 G4F O8 O7 O 0 1 N N N 18.025 -23.023 -61.542 5.939 -1.332 0.888 O8 G4F 10 G4F C10 C2 C 0 1 N N R 17.027 -22.664 -60.567 5.332 -2.370 0.115 C10 G4F 11 G4F C11 C3 C 0 1 N N N 15.894 -21.993 -61.322 5.365 -3.680 0.905 C11 G4F 12 G4F O9 O8 O 0 1 N N N 14.788 -22.885 -61.500 4.551 -3.552 2.073 O9 G4F 13 G4F C12 C4 C 0 1 N N S 17.713 -21.775 -59.540 6.102 -2.546 -1.196 C12 G4F 14 G4F F F1 F 0 1 N N N 16.772 -21.369 -58.580 5.477 -3.522 -1.979 F G4F 15 G4F C13 C5 C 0 1 N N R 18.836 -22.527 -58.841 6.116 -1.214 -1.953 C13 G4F 16 G4F O10 O9 O 0 1 N N N 19.496 -21.640 -57.935 6.896 -1.349 -3.143 O10 G4F 17 G4F C9 C6 C 0 1 N N S 19.821 -23.027 -59.900 6.733 -0.136 -1.056 C9 G4F 18 G4F O7 O10 O 0 1 N N N 20.491 -21.911 -60.484 8.091 -0.474 -0.768 O7 G4F 19 G4F O3 O11 O 0 1 N N N 19.502 -28.797 -63.057 -0.228 2.207 -0.108 O3 G4F 20 G4F C7 C7 C 0 1 N N N 18.674 -28.614 -64.219 -1.451 2.930 0.050 C7 G4F 21 G4F C6 C8 C 0 1 N N R 18.024 -29.930 -64.559 -2.562 2.230 -0.736 C6 G4F 22 G4F C5 C9 C 0 1 N N S 17.358 -30.670 -63.388 -3.863 3.061 -0.682 C5 G4F 23 G4F O2 O12 O 0 1 N N N 16.073 -31.149 -63.766 -4.009 3.840 -1.871 O2 G4F 24 G4F C4 C10 C 0 1 N N R 18.325 -31.812 -63.108 -4.982 2.000 -0.589 C4 G4F 25 G4F O1 O13 O 0 1 N N N 17.725 -32.945 -62.470 -5.854 2.091 -1.718 O1 G4F 26 G4F O14 O14 O 0 1 N N N 18.998 -30.835 -65.127 -2.901 0.972 -0.114 O14 G4F 27 G4F C3 C11 C 0 1 N N R 18.812 -32.102 -64.533 -4.225 0.654 -0.597 C3 G4F 28 G4F N1 N1 N 0 1 Y N N 20.078 -32.799 -64.578 -4.878 -0.305 0.298 N1 G4F 29 G4F C2 C12 C 0 1 Y N N 20.339 -33.940 -65.268 -4.588 -0.504 1.617 C2 G4F 30 G4F N N2 N 0 1 Y N N 21.533 -34.418 -65.057 -5.362 -1.431 2.102 N G4F 31 G4F C14 C13 C 0 1 Y N N 21.226 -32.501 -63.879 -5.894 -1.160 -0.034 C14 G4F 32 G4F C1 C14 C 0 1 Y N N 22.104 -33.531 -64.163 -6.191 -1.879 1.129 C1 G4F 33 G4F N2 N3 N 0 1 N N N 21.444 -31.403 -63.094 -6.578 -1.404 -1.158 N2 G4F 34 G4F C15 C15 C 0 1 N N N 22.656 -31.409 -62.526 -7.531 -2.309 -1.190 C15 G4F 35 G4F N3 N4 N 0 1 N N N 23.047 -30.376 -61.764 -8.206 -2.524 -2.365 N3 G4F 36 G4F N4 N5 N 0 1 N N N 23.575 -32.417 -62.718 -7.868 -3.039 -0.090 N4 G4F 37 G4F C C16 C 0 1 N N N 23.385 -33.519 -63.550 -7.215 -2.854 1.079 C G4F 38 G4F O O15 O 0 1 N N N 24.283 -34.330 -63.746 -7.511 -3.501 2.069 O G4F 39 G4F H1 H1 H 0 1 N N N 22.118 -28.216 -61.498 1.773 4.057 -0.984 H1 G4F 40 G4F H2 H2 H 0 1 N N N 17.228 -27.929 -60.669 2.952 -0.536 2.142 H2 G4F 41 G4F H3 H3 H 0 1 N N N 19.820 -24.018 -61.798 6.398 0.682 0.909 H3 G4F 42 G4F H4 H4 H 0 1 N N N 16.643 -23.565 -60.065 4.298 -2.103 -0.103 H4 G4F 43 G4F H5 H5 H 0 1 N N N 16.260 -21.675 -62.309 4.983 -4.489 0.283 H5 G4F 44 G4F H6 H6 H 0 1 N N N 15.557 -21.113 -60.755 6.391 -3.901 1.200 H6 G4F 45 G4F H7 H7 H 0 1 N N N 14.095 -22.440 -61.974 4.525 -4.347 2.623 H7 G4F 46 G4F H8 H8 H 0 1 N N N 18.138 -20.901 -60.055 7.126 -2.852 -0.979 H8 G4F 47 G4F H9 H9 H 0 1 N N N 18.416 -23.389 -58.302 5.096 -0.933 -2.215 H9 G4F 48 G4F H10 H10 H 0 1 N N N 18.877 -21.335 -57.282 6.566 -2.021 -3.755 H10 G4F 49 G4F H11 H11 H 0 1 N N N 20.548 -23.698 -59.419 6.696 0.827 -1.566 H11 G4F 50 G4F H12 H12 H 0 1 N N N 20.947 -21.425 -59.807 8.543 0.164 -0.199 H12 G4F 51 G4F H13 H13 H 0 1 N N N 19.291 -28.276 -65.064 -1.719 2.964 1.106 H13 G4F 52 G4F H14 H14 H 0 1 N N N 17.900 -27.862 -64.007 -1.324 3.945 -0.326 H14 G4F 53 G4F H15 H15 H 0 1 N N N 17.246 -29.736 -65.312 -2.254 2.074 -1.769 H15 G4F 54 G4F H16 H16 H 0 1 N N N 17.298 -30.005 -62.514 -3.871 3.702 0.199 H16 G4F 55 G4F H17 H17 H 0 1 N N N 15.675 -31.603 -63.032 -4.810 4.381 -1.890 H17 G4F 56 G4F H18 H18 H 0 1 N N N 19.168 -31.435 -62.510 -5.545 2.118 0.337 H18 G4F 57 G4F H19 H19 H 0 1 N N N 17.445 -32.705 -61.595 -6.310 2.940 -1.795 H19 G4F 58 G4F H20 H20 H 0 1 N N N 18.041 -32.676 -65.068 -4.173 0.254 -1.610 H20 G4F 59 G4F H21 H21 H 0 1 N N N 19.624 -34.407 -65.929 -3.830 0.027 2.173 H21 G4F 60 G4F H22 H22 H 0 1 N N N 22.433 -29.600 -61.620 -7.977 -2.012 -3.157 H22 G4F 61 G4F H23 H23 H 0 1 N N N 23.953 -30.382 -61.340 -8.911 -3.188 -2.405 H23 G4F 62 G4F H24 H24 H 0 1 N N N 24.442 -32.353 -62.224 -8.576 -3.700 -0.147 H24 G4F 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G4F C2 N DOUB Y N 1 G4F C2 N1 SING Y N 2 G4F O14 C6 SING N N 3 G4F O14 C3 SING N N 4 G4F N C1 SING Y N 5 G4F N1 C3 SING N N 6 G4F N1 C14 SING Y N 7 G4F C6 C7 SING N N 8 G4F C6 C5 SING N N 9 G4F C3 C4 SING N N 10 G4F C7 O3 SING N N 11 G4F C1 C14 DOUB Y N 12 G4F C1 C SING N N 13 G4F C14 N2 SING N N 14 G4F O2 C5 SING N N 15 G4F O13 P DOUB N N 16 G4F O C DOUB N N 17 G4F C N4 SING N N 18 G4F C5 C4 SING N N 19 G4F C4 O1 SING N N 20 G4F N2 C15 DOUB N N 21 G4F O3 P SING N N 22 G4F N4 C15 SING N N 23 G4F P O5 SING N N 24 G4F P O4 SING N N 25 G4F C15 N3 SING N N 26 G4F O12 P1 DOUB N N 27 G4F O5 P1 SING N N 28 G4F O8 C8 SING N N 29 G4F O8 C10 SING N N 30 G4F O9 C11 SING N N 31 G4F P1 O11 SING N N 32 G4F P1 O6 SING N N 33 G4F C11 C10 SING N N 34 G4F C8 O6 SING N N 35 G4F C8 C9 SING N N 36 G4F C10 C12 SING N N 37 G4F O7 C9 SING N N 38 G4F C9 C13 SING N N 39 G4F C12 C13 SING N N 40 G4F C12 F SING N N 41 G4F C13 O10 SING N N 42 G4F O4 H1 SING N N 43 G4F O11 H2 SING N N 44 G4F C8 H3 SING N N 45 G4F C10 H4 SING N N 46 G4F C11 H5 SING N N 47 G4F C11 H6 SING N N 48 G4F O9 H7 SING N N 49 G4F C12 H8 SING N N 50 G4F C13 H9 SING N N 51 G4F O10 H10 SING N N 52 G4F C9 H11 SING N N 53 G4F O7 H12 SING N N 54 G4F C7 H13 SING N N 55 G4F C7 H14 SING N N 56 G4F C6 H15 SING N N 57 G4F C5 H16 SING N N 58 G4F O2 H17 SING N N 59 G4F C4 H18 SING N N 60 G4F O1 H19 SING N N 61 G4F C3 H20 SING N N 62 G4F C2 H21 SING N N 63 G4F N3 H22 SING N N 64 G4F N3 H23 SING N N 65 G4F N4 H24 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G4F InChI InChI 1.03 "InChI=1S/C16H24FN5O15P2/c17-6-4(1-23)35-15(11(27)9(6)25)36-39(31,32)37-38(29,30)33-2-5-8(24)10(26)14(34-5)22-3-19-7-12(22)20-16(18)21-13(7)28/h3-6,8-11,14-15,23-27H,1-2H2,(H,29,30)(H,31,32)(H3,18,20,21,28)/t4-,5-,6-,8-,9+,10-,11+,14-,15-/m1/s1" G4F InChIKey InChI 1.03 LDMYSLGOFVDHNN-YVXBHLEUSA-N G4F SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]4O[C@H](CO)[C@@H](F)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O" G4F SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH](CO)[CH](F)[CH](O)[CH]4O)[CH](O)[CH]3O" G4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)F)O)O)O)O)N=C(NC2=O)N" G4F SMILES "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)CO)F)O)O)O)O)N=C(NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier G4F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{S},6~{R})-5-fluoranyl-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G4F "Create component" 2018-06-06 RCSB G4F "Initial release" 2018-07-18 RCSB #