data_G4H # _chem_comp.id G4H _chem_comp.name "~{N}-[1-methyl-2-oxidanylidene-3-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]benzimidazol-5-yl]propanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H36 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 612.720 _chem_comp.one_letter_code ? _chem_comp.three_letter_code G4H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HHJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal G4H CAR C1 C 0 1 Y N N N N N 15.858 -11.802 -6.954 2.913 -0.922 1.243 CAR G4H 1 G4H CAS C2 C 0 1 Y N N N N N 15.494 -10.462 -6.913 1.805 -1.641 1.645 CAS G4H 2 G4H CAT C3 C 0 1 Y N N N N N 15.645 -9.663 -8.039 1.877 -3.017 1.767 CAT G4H 3 G4H CAU C4 C 0 1 Y N N N N N 16.160 -10.206 -9.211 3.057 -3.681 1.487 CAU G4H 4 G4H CAV C5 C 0 1 Y N N N N N 16.525 -11.547 -9.251 4.171 -2.974 1.084 CAV G4H 5 G4H CBJ C6 C 0 1 Y N N N N N 16.360 -12.354 -8.127 4.104 -1.587 0.953 CBJ G4H 6 G4H CBM C7 C 0 1 Y N N N N N 16.726 -13.700 -8.122 5.296 -0.821 0.520 CBM G4H 7 G4H CBN C8 C 0 1 Y N N N N N 17.568 -14.104 -7.092 6.524 -1.019 1.146 CBN G4H 8 G4H CBS C9 C 0 1 Y N N N N N 17.985 -15.423 -7.016 7.615 -0.273 0.699 CBS G4H 9 G4H CBQ C10 C 0 1 N N N N N N 18.828 -15.844 -5.996 8.946 -0.411 1.296 CBQ G4H 10 G4H OAN O1 O 0 1 N N N N N N 19.222 -15.053 -5.143 9.133 -1.195 2.210 OAN G4H 11 G4H NBT N1 N 0 1 N N N N N N 19.234 -17.183 -5.938 9.962 0.338 0.823 NBT G4H 12 G4H CBR C11 C 0 1 N N N N N N 18.819 -18.047 -6.848 9.794 1.226 -0.198 CBR G4H 13 G4H CBO C12 C 0 1 N N N N N N 17.972 -17.649 -7.881 8.609 1.416 -0.802 CBO G4H 14 G4H CBP C13 C 0 1 Y N N N N N 17.551 -16.327 -7.968 7.442 0.650 -0.362 CBP G4H 15 G4H NBK N2 N 0 1 Y N N N N N 16.737 -15.924 -8.954 6.253 0.806 -0.931 NBK G4H 16 G4H CBL C14 C 0 1 Y N N N N N 16.313 -14.652 -9.068 5.200 0.110 -0.533 CBL G4H 17 G4H CBI C15 C 0 1 Y N N N N N 15.459 -14.383 -10.139 3.895 0.321 -1.200 CBI G4H 18 G4H CBH C16 C 0 1 Y N N N N N 14.183 -13.863 -9.927 3.535 1.591 -1.649 CBH G4H 19 G4H CBG C17 C 0 1 Y N N N N N 13.337 -13.618 -11.006 2.318 1.781 -2.270 CBG G4H 20 G4H CBD C18 C 0 1 Y N N N N N 15.871 -14.681 -11.433 3.023 -0.751 -1.387 CBD G4H 21 G4H CBE C19 C 0 1 Y N N N N N 15.025 -14.436 -12.513 1.810 -0.550 -2.014 CBE G4H 22 G4H CBF C20 C 0 1 Y N N N N N 13.752 -13.909 -12.300 1.454 0.715 -2.448 CBF G4H 23 G4H CBC C21 C 0 1 N N N N N N 12.896 -13.651 -13.371 0.129 0.928 -3.132 CBC G4H 24 G4H NBB N3 N 0 1 N N N N N N 12.599 -14.838 -14.188 -0.894 1.252 -2.128 NBB G4H 25 G4H CBA C22 C 0 1 N N N N N N 11.412 -15.518 -13.643 -2.138 1.696 -2.769 CBA G4H 26 G4H CAZ C23 C 0 1 N N N N N N 10.986 -16.706 -14.504 -3.127 2.162 -1.698 CAZ G4H 27 G4H CAW C24 C 0 1 N N N N N N 12.292 -14.375 -15.551 -1.135 0.110 -1.236 CAW G4H 28 G4H CAX C25 C 0 1 N N N N N N 11.968 -15.545 -16.462 -2.094 0.528 -0.119 CAX G4H 29 G4H CAY C26 C 0 1 N N N N N N 10.724 -16.233 -15.940 -3.412 1.005 -0.736 CAY G4H 30 G4H NAQ N4 N 0 1 N N N N N N 10.311 -17.333 -16.862 -4.313 1.461 0.325 NAQ G4H 31 G4H CAL C27 C 0 1 Y N N N N N 9.289 -17.315 -17.728 -5.571 0.934 0.608 CAL G4H 32 G4H CAH C28 C 0 1 Y N N N N N 8.372 -16.381 -18.005 -6.321 -0.087 0.047 CAH G4H 33 G4H CAI C29 C 0 1 N N N N N N 10.904 -18.513 -17.010 -4.063 2.457 1.196 CAI G4H 34 G4H OAD O2 O 0 1 N N N N N N 11.889 -18.912 -16.393 -3.046 3.124 1.225 OAD G4H 35 G4H NAJ N5 N 0 1 N N N N N N 10.272 -19.231 -17.922 -5.110 2.602 2.031 NAJ G4H 36 G4H CAO C30 C 0 1 N N N N N N 10.621 -20.599 -18.359 -5.212 3.582 3.115 CAO G4H 37 G4H CAK C31 C 0 1 Y N N N N N 9.267 -18.491 -18.375 -6.078 1.659 1.689 CAK G4H 38 G4H CAE C32 C 0 1 Y N N N N N 8.350 -18.770 -19.298 -7.333 1.358 2.197 CAE G4H 39 G4H CAF C33 C 0 1 Y N N N N N 7.377 -17.841 -19.623 -8.078 0.342 1.635 CAF G4H 40 G4H CAG C34 C 0 1 Y N N N N N 7.388 -16.623 -18.964 -7.574 -0.386 0.563 CAG G4H 41 G4H NAC N6 N 0 1 N N N N N N 6.447 -15.728 -19.272 -8.336 -1.415 -0.004 NAC G4H 42 G4H CAB C35 C 0 1 N N N N N N 5.564 -15.403 -18.315 -7.725 -2.504 -0.512 CAB G4H 43 G4H OAP O3 O 0 1 N N N N N N 5.577 -15.863 -17.176 -6.526 -2.638 -0.393 OAP G4H 44 G4H CAA C36 C 0 1 N N N N N N 4.490 -14.400 -18.732 -8.533 -3.556 -1.227 CAA G4H 45 G4H CAM C37 C 0 1 N N N N N N 4.374 -14.158 -20.237 -7.606 -4.677 -1.701 CAM G4H 46 G4H H1 H1 H 0 1 N N N N N N 15.751 -12.417 -6.072 2.856 0.152 1.149 H1 G4H 47 G4H H2 H2 H 0 1 N N N N N N 15.093 -10.040 -6.003 0.881 -1.127 1.866 H2 G4H 48 G4H H3 H3 H 0 1 N N N N N N 15.363 -8.621 -8.004 1.007 -3.575 2.082 H3 G4H 49 G4H H4 H4 H 0 1 N N N N N N 16.276 -9.587 -10.089 3.107 -4.755 1.584 H4 G4H 50 G4H H5 H5 H 0 1 N N N N N N 16.938 -11.965 -10.157 5.093 -3.493 0.865 H5 G4H 51 G4H H6 H6 H 0 1 N N N N N N 17.897 -13.390 -6.351 6.629 -1.729 1.953 H6 G4H 52 G4H H7 H7 H 0 1 N N N N N N 19.141 -19.076 -6.790 10.646 1.798 -0.534 H7 G4H 53 G4H H8 H8 H 0 1 N N N N N N 17.642 -18.369 -8.615 8.518 2.131 -1.607 H8 G4H 54 G4H H10 H10 H 0 1 N N N N N N 13.849 -13.649 -8.922 4.208 2.425 -1.511 H10 G4H 55 G4H H11 H11 H 0 1 N N N N N N 12.355 -13.201 -10.837 2.038 2.765 -2.618 H11 G4H 56 G4H H12 H12 H 0 1 N N N N N N 16.850 -15.104 -11.602 3.296 -1.737 -1.041 H12 G4H 57 G4H H13 H13 H 0 1 N N N N N N 15.356 -14.655 -13.517 1.132 -1.379 -2.155 H13 G4H 58 G4H H14 H14 H 0 1 N N N N N N 13.365 -12.893 -14.016 0.215 1.751 -3.842 H14 G4H 59 G4H H15 H15 H 0 1 N N N N N N 11.949 -13.258 -12.972 -0.157 0.020 -3.662 H15 G4H 60 G4H H17 H17 H 0 1 N N N N N N 10.581 -14.798 -13.595 -1.922 2.522 -3.447 H17 G4H 61 G4H H18 H18 H 0 1 N N N N N N 11.643 -15.879 -12.630 -2.573 0.870 -3.331 H18 G4H 62 G4H H19 H19 H 0 1 N N N N N N 10.067 -17.147 -14.090 -2.698 2.997 -1.145 H19 G4H 63 G4H H20 H20 H 0 1 N N N N N N 11.786 -17.461 -14.507 -4.056 2.478 -2.173 H20 G4H 64 G4H H21 H21 H 0 1 N N N N N N 13.163 -13.836 -15.953 -1.575 -0.709 -1.805 H21 G4H 65 G4H H22 H22 H 0 1 N N N N N N 11.427 -13.697 -15.514 -0.191 -0.216 -0.800 H22 G4H 66 G4H H23 H23 H 0 1 N N N N N N 12.809 -16.254 -16.468 -2.285 -0.323 0.534 H23 G4H 67 G4H H24 H24 H 0 1 N N N N N N 11.789 -15.180 -17.484 -1.649 1.338 0.459 H24 G4H 68 G4H H25 H25 H 0 1 N N N N N N 9.914 -15.490 -15.906 -3.876 0.184 -1.282 H25 G4H 69 G4H H26 H26 H 0 1 N N N N N N 8.394 -15.435 -17.484 -5.931 -0.650 -0.789 H26 G4H 70 G4H H27 H27 H 0 1 N N N N N N 11.502 -20.949 -17.802 -4.304 4.184 3.147 H27 G4H 71 G4H H28 H28 H 0 1 N N N N N N 9.774 -21.273 -18.165 -6.071 4.230 2.939 H28 G4H 72 G4H H29 H29 H 0 1 N N N N N N 10.847 -20.594 -19.436 -5.337 3.062 4.064 H29 G4H 73 G4H H30 H30 H 0 1 N N N N N N 8.365 -19.728 -19.797 -7.726 1.917 3.033 H30 G4H 74 G4H H31 H31 H 0 1 N N N N N N 6.629 -18.060 -20.371 -9.055 0.107 2.032 H31 G4H 75 G4H H32 H32 H 0 1 N N N N N N 6.402 -15.315 -20.182 -9.303 -1.344 -0.032 H32 G4H 76 G4H H33 H33 H 0 1 N N N N N N 4.717 -13.438 -18.249 -9.280 -3.966 -0.547 H33 G4H 77 G4H H34 H34 H 0 1 N N N N N N 3.519 -14.771 -18.371 -9.032 -3.109 -2.087 H34 G4H 78 G4H H35 H35 H 0 1 N N N N N N 3.577 -13.425 -20.431 -6.859 -4.268 -2.381 H35 G4H 79 G4H H36 H36 H 0 1 N N N N N N 5.330 -13.771 -20.621 -7.108 -5.124 -0.841 H36 G4H 80 G4H H37 H37 H 0 1 N N N N N N 4.132 -15.104 -20.743 -8.190 -5.438 -2.218 H37 G4H 81 G4H H16 H16 H 0 1 N N N N N N 19.841 -17.487 -5.204 10.841 0.243 1.222 H16 G4H 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal G4H CAM CAA SING N N 1 G4H CAF CAE DOUB Y N 2 G4H CAF CAG SING Y N 3 G4H CAE CAK SING Y N 4 G4H NAC CAG SING N N 5 G4H NAC CAB SING N N 6 G4H CAG CAH DOUB Y N 7 G4H CAA CAB SING N N 8 G4H CAK NAJ SING N N 9 G4H CAK CAL DOUB Y N 10 G4H CAO NAJ SING N N 11 G4H CAB OAP DOUB N N 12 G4H CAH CAL SING Y N 13 G4H NAJ CAI SING N N 14 G4H CAL NAQ SING N N 15 G4H CAI NAQ SING N N 16 G4H CAI OAD DOUB N N 17 G4H NAQ CAY SING N N 18 G4H CAX CAY SING N N 19 G4H CAX CAW SING N N 20 G4H CAY CAZ SING N N 21 G4H CAW NBB SING N N 22 G4H CAZ CBA SING N N 23 G4H NBB CBA SING N N 24 G4H NBB CBC SING N N 25 G4H CBC CBF SING N N 26 G4H CBE CBF DOUB Y N 27 G4H CBE CBD SING Y N 28 G4H CBF CBG SING Y N 29 G4H CBD CBI DOUB Y N 30 G4H CBG CBH DOUB Y N 31 G4H CBI CBH SING Y N 32 G4H CBI CBL SING N N 33 G4H CAV CAU DOUB Y N 34 G4H CAV CBJ SING Y N 35 G4H CAU CAT SING Y N 36 G4H CBL NBK DOUB Y N 37 G4H CBL CBM SING Y N 38 G4H NBK CBP SING Y N 39 G4H CBJ CBM SING N N 40 G4H CBJ CAR DOUB Y N 41 G4H CBM CBN DOUB Y N 42 G4H CAT CAS DOUB Y N 43 G4H CBP CBO SING N N 44 G4H CBP CBS DOUB Y N 45 G4H CBO CBR DOUB N N 46 G4H CBN CBS SING Y N 47 G4H CBS CBQ SING N N 48 G4H CAR CAS SING Y N 49 G4H CBR NBT SING N N 50 G4H CBQ NBT SING N N 51 G4H CBQ OAN DOUB N N 52 G4H CAR H1 SING N N 53 G4H CAS H2 SING N N 54 G4H CAT H3 SING N N 55 G4H CAU H4 SING N N 56 G4H CAV H5 SING N N 57 G4H CBN H6 SING N N 58 G4H CBR H7 SING N N 59 G4H CBO H8 SING N N 60 G4H CBH H10 SING N N 61 G4H CBG H11 SING N N 62 G4H CBD H12 SING N N 63 G4H CBE H13 SING N N 64 G4H CBC H14 SING N N 65 G4H CBC H15 SING N N 66 G4H CBA H17 SING N N 67 G4H CBA H18 SING N N 68 G4H CAZ H19 SING N N 69 G4H CAZ H20 SING N N 70 G4H CAW H21 SING N N 71 G4H CAW H22 SING N N 72 G4H CAX H23 SING N N 73 G4H CAX H24 SING N N 74 G4H CAY H25 SING N N 75 G4H CAH H26 SING N N 76 G4H CAO H27 SING N N 77 G4H CAO H28 SING N N 78 G4H CAO H29 SING N N 79 G4H CAE H30 SING N N 80 G4H CAF H31 SING N N 81 G4H NAC H32 SING N N 82 G4H CAA H33 SING N N 83 G4H CAA H34 SING N N 84 G4H CAM H35 SING N N 85 G4H CAM H36 SING N N 86 G4H CAM H37 SING N N 87 G4H NBT H16 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor G4H InChI InChI 1.03 "InChI=1S/C37H36N6O3/c1-3-34(44)39-27-13-14-32-33(21-27)43(37(46)41(32)2)28-16-19-42(20-17-28)23-24-9-11-26(12-10-24)35-29(25-7-5-4-6-8-25)22-30-31(40-35)15-18-38-36(30)45/h4-15,18,21-22,28H,3,16-17,19-20,23H2,1-2H3,(H,38,45)(H,39,44)" G4H InChIKey InChI 1.03 NOAOWOIAXARUHL-UHFFFAOYSA-N G4H SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1ccc2N(C)C(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5nc6C=CNC(=O)c6cc5c7ccccc7)c2c1" G4H SMILES CACTVS 3.385 "CCC(=O)Nc1ccc2N(C)C(=O)N(C3CCN(CC3)Cc4ccc(cc4)c5nc6C=CNC(=O)c6cc5c7ccccc7)c2c1" G4H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2C)C3CCN(CC3)Cc4ccc(cc4)c5c(cc6c(n5)C=CNC6=O)c7ccccc7" G4H SMILES "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1ccc2c(c1)N(C(=O)N2C)C3CCN(CC3)Cc4ccc(cc4)c5c(cc6c(n5)C=CNC6=O)c7ccccc7" # _pdbx_chem_comp_identifier.comp_id G4H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "~{N}-[1-methyl-2-oxidanylidene-3-[1-[[4-(5-oxidanylidene-3-phenyl-6~{H}-1,6-naphthyridin-2-yl)phenyl]methyl]piperidin-4-yl]benzimidazol-5-yl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site G4H "Create component" 2018-08-28 EBI G4H "Initial release" 2019-02-20 RCSB G4H "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id G4H _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAM _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #